Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 88 - 155 | 6.7e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 439 |
| AccI | GTMKAC | 1 cut(s) | 250 |
| AciI | CCGC | 1 cut(s) | 218 |
| AclWI | GGATC | 2 cut(s) | 26, 311 |
| AdeI | CACNNNGTG | 1 cut(s) | 193 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 245, 391, 439 |
| AjnI | CCWGG | 2 cut(s) | 212, 366 |
| AluBI | AGCT | 4 cut(s) | 235, 344, 380, 410 |
| AluI | AGCT | 4 cut(s) | 235, 344, 380, 410 |
| Alw26I | GTCTC | 1 cut(s) | 452 |
| AlwI | GGATC | 2 cut(s) | 26, 311 |
| Ama87I | CYCGRG | 1 cut(s) | 241 |
| AoxI | GGCC | 2 cut(s) | 81, 215 |
| ApaI | GGGCCC | 1 cut(s) | 85 |
| ApeKI | GCWGC | 2 cut(s) | 143, 344 |
| AspLEI | GCGC | 1 cut(s) | 187 |
| AspS9I | GGNCC | 2 cut(s) | 81, 82 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 422 |
| AsuNHI | GCTAGC | 1 cut(s) | 155 |
| AvaI | CYCGRG | 1 cut(s) | 241 |
| BaeGI | GKGCMC | 1 cut(s) | 85 |
| BanII | GRGCYC | 1 cut(s) | 85 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| BbvI | GCAGC | 2 cut(s) | 130, 331 |
| BccI | CCATC | 2 cut(s) | 263, 323 |
| BciT130I | CCWGG | 2 cut(s) | 214, 368 |
| BcoDI | GTCTC | 1 cut(s) | 452 |
| BfaI | CTAG | 2 cut(s) | 156, 198 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BisI | GCNGC | 3 cut(s) | 144, 218, 345 |
| BlsI | GCNGC | 3 cut(s) | 145, 219, 346 |
| Bme1390I | CCNGG | 2 cut(s) | 214, 368 |
| BmeT110I | CYCGRG | 1 cut(s) | 241 |
| BmgT120I | GGNCC | 2 cut(s) | 81, 82 |
| BmiI | GGNNCC | 1 cut(s) | 83 |
| BmrFI | CCNGG | 2 cut(s) | 214, 368 |
| BmrI | ACTGGG | 1 cut(s) | 185 |
| BmtI | GCTAGC | 1 cut(s) | 159 |
| BmuI | ACTGGG | 1 cut(s) | 185 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| BsaBI | GATNNNNATC | 1 cut(s) | 174 |
| BsaI | GGTCTC | 1 cut(s) | 452 |
| BsaJI | CCNNGG | 3 cut(s) | 242, 366, 433 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 245, 391, 439 |
| Bse1I | ACTGG | 2 cut(s) | 191, 295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 174 |
| BseBI | CCWGG | 2 cut(s) | 214, 368 |
| BseDI | CCNNGG | 3 cut(s) | 242, 366, 433 |
| BseGI | GGATG | 1 cut(s) | 274 |
| BseJI | GATNNNNATC | 1 cut(s) | 174 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 245, 391, 439 |
| BseNI | ACTGG | 2 cut(s) | 191, 295 |
| BseSI | GKGCMC | 1 cut(s) | 85 |
| BseXI | GCAGC | 2 cut(s) | 130, 331 |
| BseYI | CCCAGC | 1 cut(s) | 150 |
| BshFI | GGCC | 2 cut(s) | 83, 217 |
| BsiHKCI | CYCGRG | 1 cut(s) | 241 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 245, 391, 439 |
| BsmAI | GTCTC | 1 cut(s) | 452 |
| BsnI | GGCC | 2 cut(s) | 83, 217 |
| Bso31I | GGTCTC | 1 cut(s) | 452 |
| BsoBI | CYCGRG | 1 cut(s) | 241 |
| Bsp120I | GGGCCC | 1 cut(s) | 81 |
| Bsp1286I | GDGCHC | 1 cut(s) | 85 |
| Bsp143I | GATC | 3 cut(s) | 18, 303, 374 |
| BspACI | CCGC | 1 cut(s) | 218 |
| BspANI | GGCC | 2 cut(s) | 83, 217 |
| BspLI | GGNNCC | 1 cut(s) | 83 |
| BspMAI | CTGCAG | 1 cut(s) | 148 |
| BspOI | GCTAGC | 1 cut(s) | 159 |
| BspPI | GGATC | 2 cut(s) | 26, 311 |
| BspTNI | GGTCTC | 1 cut(s) | 452 |
| BsrI | ACTGG | 2 cut(s) | 191, 295 |
| BssECI | CCNNGG | 3 cut(s) | 242, 366, 433 |
| BssMI | GATC | 3 cut(s) | 18, 303, 374 |
| BssT1I | CCWWGG | 1 cut(s) | 433 |
| Bst2UI | CCWGG | 2 cut(s) | 214, 368 |
| Bst6I | CTCTTC | 1 cut(s) | 45 |
| BstC8I | GCNNGC | 3 cut(s) | 27, 148, 157 |
| BstF5I | GGATG | 1 cut(s) | 274 |
| BstHHI | GCGC | 1 cut(s) | 187 |
| BstKTI | GATC | 3 cut(s) | 21, 306, 377 |
| BstMAI | GTCTC | 1 cut(s) | 452 |
| BstMBI | GATC | 3 cut(s) | 18, 303, 374 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 152, 156, 350, 407 |
| BstNI | CCWGG | 2 cut(s) | 214, 368 |
| BstNSI | RCATGY | 2 cut(s) | 29, 33 |
| BstSCI | CCNGG | 2 cut(s) | 212, 366 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstSLI | GKGCMC | 1 cut(s) | 85 |
| BstV1I | GCAGC | 2 cut(s) | 130, 331 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 1 cut(s) | 18 |
| BstYI | RGATCY | 1 cut(s) | 18 |
| BsuRI | GGCC | 2 cut(s) | 83, 217 |
| BtsCI | GGATG | 1 cut(s) | 274 |
| BtsIMutI | CAGTG | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 3 cut(s) | 27, 148, 157 |
| CfoI | GCGC | 1 cut(s) | 187 |
| Cfr13I | GGNCC | 2 cut(s) | 81, 82 |
| CviAII | CATG | 6 cut(s) | 15, 26, 30, 92, 281, 439 |
| DpnI | GATC | 3 cut(s) | 20, 305, 376 |
| DpnII | GATC | 3 cut(s) | 18, 303, 374 |
| DraIII | CACNNNGTG | 1 cut(s) | 193 |
| Eam1104I | CTCTTC | 1 cut(s) | 45 |
| EarI | CTCTTC | 1 cut(s) | 45 |
| Eco130I | CCWWGG | 1 cut(s) | 433 |
| Eco24I | GRGCYC | 1 cut(s) | 85 |
| Eco31I | GGTCTC | 1 cut(s) | 452 |
| Eco88I | CYCGRG | 1 cut(s) | 241 |
| EcoO109I | RGGNCCY | 1 cut(s) | 82 |
| EcoRII | CCWGG | 2 cut(s) | 212, 366 |
| EcoT14I | CCWWGG | 1 cut(s) | 433 |
| EcoT22I | ATGCAT | 1 cut(s) | 31 |
| EcoT38I | GRGCYC | 1 cut(s) | 85 |
| ErhI | CCWWGG | 1 cut(s) | 433 |
| FaeI | CATG | 6 cut(s) | 18, 29, 33, 95, 284, 442 |
| FatI | CATG | 6 cut(s) | 14, 25, 29, 91, 280, 438 |
| FblI | GTMKAC | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 3 cut(s) | 144, 218, 345 |
| FokI | GGATG | 1 cut(s) | 281 |
| FriOI | GRGCYC | 1 cut(s) | 85 |
| Fsp4HI | GCNGC | 3 cut(s) | 144, 218, 345 |
| FspBI | CTAG | 2 cut(s) | 156, 198 |
| GlaI | GCGC | 1 cut(s) | 186 |
| GluI | GCNGC | 3 cut(s) | 144, 218, 345 |
| GsaI | CCCAGC | 1 cut(s) | 154 |
| HaeIII | GGCC | 2 cut(s) | 83, 217 |
| HhaI | GCGC | 1 cut(s) | 187 |
| Hin1II | CATG | 6 cut(s) | 18, 29, 33, 95, 284, 442 |
| Hin6I | GCGC | 1 cut(s) | 185 |
| HinP1I | GCGC | 1 cut(s) | 185 |
| HinfI | GANTC | 1 cut(s) | 35 |
| HphI | GGTGA | 2 cut(s) | 344, 422 |
| Hpy166II | GTNNAC | 1 cut(s) | 251 |
| Hpy188III | TCNNGA | 2 cut(s) | 167, 198 |
| Hpy8I | GTNNAC | 1 cut(s) | 251 |
| HpyAV | CCTTC | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 6 cut(s) | 14, 25, 29, 146, 347, 353 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 152, 156, 350, 407 |
| Hsp92II | CATG | 6 cut(s) | 18, 29, 33, 95, 284, 442 |
| HspAI | GCGC | 1 cut(s) | 185 |
| Kzo9I | GATC | 3 cut(s) | 18, 303, 374 |
| LmnI | GCTCC | 2 cut(s) | 232, 284 |
| LpnPI | CCDG | 9 cut(s) | 132, 136, 199, 204, 226, 276, 353, 380, 396 |
| Lsp1109I | GCAGC | 2 cut(s) | 130, 331 |
| MaeI | CTAG | 2 cut(s) | 156, 198 |
| MalI | GATC | 3 cut(s) | 20, 305, 376 |
| MboI | GATC | 3 cut(s) | 18, 303, 374 |
| MboII | GAAGA | 3 cut(s) | 32, 338, 407 |
| MfeI | CAATTG | 1 cut(s) | 348 |
| MflI | RGATCY | 1 cut(s) | 18 |
| MhlI | GDGCHC | 1 cut(s) | 85 |
| MluCI | AATT | 2 cut(s) | 121, 348 |
| MnlI | CCTC | 4 cut(s) | 144, 237, 385, 391 |
| Mph1103I | ATGCAT | 1 cut(s) | 31 |
| MseI | TTAA | 2 cut(s) | 138, 255 |
| MslI | CAYNNNNRTG | 1 cut(s) | 30 |
| MspR9I | CCNGG | 2 cut(s) | 214, 368 |
| MunI | CAATTG | 1 cut(s) | 348 |
| MvaI | CCWGG | 2 cut(s) | 214, 368 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 152, 156, 350, 407 |
| NdeII | GATC | 3 cut(s) | 18, 303, 374 |
| NheI | GCTAGC | 1 cut(s) | 155 |
| NlaIII | CATG | 6 cut(s) | 18, 29, 33, 95, 284, 442 |
| NlaIV | GGNNCC | 1 cut(s) | 83 |
| NsiI | ATGCAT | 1 cut(s) | 31 |
| NspI | RCATGY | 2 cut(s) | 29, 33 |
| PaeI | GCATGC | 1 cut(s) | 29 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 439 |
| PkrI | GCNGC | 3 cut(s) | 145, 219, 346 |
| Psp6I | CCWGG | 2 cut(s) | 212, 366 |
| PspFI | CCCAGC | 1 cut(s) | 150 |
| PspGI | CCWGG | 2 cut(s) | 212, 366 |
| PspN4I | GGNNCC | 1 cut(s) | 83 |
| PspOMI | GGGCCC | 1 cut(s) | 81 |
| PspPI | GGNCC | 2 cut(s) | 81, 82 |
| PstI | CTGCAG | 1 cut(s) | 148 |
| PsuI | RGATCY | 1 cut(s) | 18 |
| RseI | CAYNNNNRTG | 1 cut(s) | 30 |
| SaqAI | TTAA | 2 cut(s) | 138, 255 |
| SatI | GCNGC | 3 cut(s) | 144, 218, 345 |
| Sau3AI | GATC | 3 cut(s) | 18, 303, 374 |
| Sau96I | GGNCC | 2 cut(s) | 81, 82 |
| ScrFI | CCNGG | 2 cut(s) | 214, 368 |
| SduI | GDGCHC | 1 cut(s) | 85 |
| SetI | ASST | 6 cut(s) | 237, 346, 361, 382, 396, 412 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 30 |
| SphI | GCATGC | 1 cut(s) | 29 |
| Sse9I | AATT | 2 cut(s) | 121, 348 |
| SsiI | CCGC | 1 cut(s) | 218 |
| SspMI | CTAG | 2 cut(s) | 156, 198 |
| StyD4I | CCNGG | 2 cut(s) | 212, 366 |
| StyI | CCWWGG | 1 cut(s) | 433 |
| TasI | AATT | 2 cut(s) | 121, 348 |
| TauI | GCSGC | 1 cut(s) | 220 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 2 cut(s) | 138, 255 |
| Tru9I | TTAA | 2 cut(s) | 138, 255 |
| TscAI | CASTG | 1 cut(s) | 198 |
| TseI | GCWGC | 2 cut(s) | 143, 344 |
| TspDTI | ATGAA | 3 cut(s) | 108, 269, 339 |
| TspGWI | ACGGA | 1 cut(s) | 281 |
| TspRI | CASTG | 1 cut(s) | 198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 439 |
| XbaI | TCTAGA | 1 cut(s) | 197 |
| XceI | RCATGY | 2 cut(s) | 29, 33 |
| XmiI | GTMKAC | 1 cut(s) | 250 |
| XspI | CTAG | 2 cut(s) | 156, 198 |
| Zsp2I | ATGCAT | 1 cut(s) | 31 |