Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aa_trans | PF01490 | 31 - 462 | 4.9e-101 | Transmembrane amino acid transporter protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1385 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 106 |
| AccB1I | GGYRCC | 1 cut(s) | 1220 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1022, 1207, 1305 |
| AccIII | TCCGGA | 1 cut(s) | 1143 |
| AciI | CCGC | 2 cut(s) | 692, 867 |
| AclWI | GGATC | 2 cut(s) | 269, 1375 |
| AcsI | RAATTY | 1 cut(s) | 280 |
| AcuI | CTGAAG | 1 cut(s) | 1114 |
| AcyI | GRCGYC | 1 cut(s) | 1221 |
| AfaI | GTAC | 6 cut(s) | 326, 366, 478, 519, 1268, 1275 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 165, 297, 927, 1022, 1207, 1305 |
| AgsI | TTSAA | 8 cut(s) | 63, 436, 1093, 1118, 1164, 1198, 1228, 1376 |
| AjnI | CCWGG | 3 cut(s) | 159, 164, 904 |
| AluBI | AGCT | 8 cut(s) | 181, 314, 340, 375, 410, 663, 1089, 1401 |
| AluI | AGCT | 8 cut(s) | 181, 314, 340, 375, 410, 663, 1089, 1401 |
| Alw26I | GTCTC | 1 cut(s) | 241 |
| AlwI | GGATC | 2 cut(s) | 269, 1375 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 353, 413 |
| Aor13HI | TCCGGA | 1 cut(s) | 1143 |
| AoxI | GGCC | 4 cut(s) | 162, 616, 819, 1235 |
| ApeKI | GCWGC | 5 cut(s) | 340, 410, 578, 864, 884 |
| ApoI | RAATTY | 1 cut(s) | 280 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 719, 751 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1127 |
| AspLEI | GCGC | 1 cut(s) | 1223 |
| AspS9I | GGNCC | 6 cut(s) | 99, 197, 300, 819, 1236, 1296 |
| AsuHPI | GGTGA | 2 cut(s) | 30, 220 |
| AvaII | GGWCC | 4 cut(s) | 99, 197, 300, 1296 |
| BanI | GGYRCC | 1 cut(s) | 1220 |
| BbvI | GCAGC | 5 cut(s) | 327, 397, 590, 851, 896 |
| BccI | CCATC | 2 cut(s) | 842, 1032 |
| BceAI | ACGGC | 2 cut(s) | 341, 500 |
| BciT130I | CCWGG | 3 cut(s) | 161, 166, 906 |
| BciVI | GTATCC | 3 cut(s) | 481, 769, 1065 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BcoDI | GTCTC | 1 cut(s) | 241 |
| BfaI | CTAG | 4 cut(s) | 182, 212, 684, 1402 |
| BfmI | CTRYAG | 4 cut(s) | 262, 1006, 1167, 1257 |
| BfoI | RGCGCY | 1 cut(s) | 1224 |
| BfuI | GTATCC | 3 cut(s) | 481, 769, 1065 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 946 |
| BisI | GCNGC | 6 cut(s) | 341, 411, 579, 693, 865, 885 |
| BlpI | GCTNAGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 6 cut(s) | 342, 412, 580, 694, 866, 886 |
| Bme1390I | CCNGG | 3 cut(s) | 161, 166, 906 |
| Bme18I | GGWCC | 4 cut(s) | 99, 197, 300, 1296 |
| BmgT120I | GGNCC | 6 cut(s) | 99, 197, 300, 819, 1236, 1296 |
| BmiI | GGNNCC | 4 cut(s) | 72, 100, 514, 1222 |
| BmrFI | CCNGG | 3 cut(s) | 161, 166, 906 |
| BmrI | ACTGGG | 2 cut(s) | 69, 105 |
| BmsI | GCATC | 2 cut(s) | 198, 472 |
| BmuI | ACTGGG | 2 cut(s) | 69, 105 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 160, 192 |
| BpmI | CTGGAG | 2 cut(s) | 187, 777 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 177 |
| BsaBI | GATNNNNATC | 1 cut(s) | 833 |
| BsaHI | GRCGYC | 1 cut(s) | 1221 |
| BsaJI | CCNNGG | 5 cut(s) | 49, 159, 619, 905, 1239 |
| BsaWI | WCCGGW | 2 cut(s) | 920, 1143 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 30, 60, 236, 266 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 165, 297, 927, 1022, 1207, 1305 |
| Bse118I | RCCGGY | 1 cut(s) | 194 |
| Bse1I | ACTGG | 5 cut(s) | 75, 100, 391, 950, 1016 |
| Bse3DI | GCAATG | 4 cut(s) | 41, 120, 200, 729 |
| Bse8I | GATNNNNATC | 1 cut(s) | 833 |
| BseAI | TCCGGA | 1 cut(s) | 1143 |
| BseBI | CCWGG | 3 cut(s) | 161, 166, 906 |
| BseDI | CCNNGG | 5 cut(s) | 49, 159, 619, 905, 1239 |
| BseGI | GGATG | 2 cut(s) | 246, 901 |
| BseJI | GATNNNNATC | 1 cut(s) | 833 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 165, 297, 927, 1022, 1207, 1305 |
| BseMI | GCAATG | 4 cut(s) | 41, 120, 200, 729 |
| BseMII | CTCAG | 2 cut(s) | 191, 1023 |
| BseNI | ACTGG | 5 cut(s) | 75, 100, 391, 950, 1016 |
| BseXI | GCAGC | 5 cut(s) | 327, 397, 590, 851, 896 |
| BshFI | GGCC | 4 cut(s) | 164, 618, 821, 1237 |
| BshNI | GGYRCC | 1 cut(s) | 1220 |
| BsiSI | CCGG | 3 cut(s) | 195, 921, 1144 |
| BslFI | GGGAC | 4 cut(s) | 112, 740, 772, 1303 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 165, 297, 927, 1022, 1207, 1305 |
| BsmAI | GTCTC | 1 cut(s) | 241 |
| BsmFI | GGGAC | 4 cut(s) | 112, 740, 772, 1303 |
| BsmI | GAATGC | 1 cut(s) | 1322 |
| BsnI | GGCC | 4 cut(s) | 164, 618, 821, 1237 |
| Bsp13I | TCCGGA | 1 cut(s) | 1143 |
| Bsp1407I | TGTACA | 3 cut(s) | 364, 476, 1273 |
| Bsp143I | GATC | 3 cut(s) | 28, 274, 1367 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 177 |
| BspACI | CCGC | 2 cut(s) | 692, 867 |
| BspANI | GGCC | 4 cut(s) | 164, 618, 821, 1237 |
| BspCNI | CTCAG | 2 cut(s) | 190, 1024 |
| BspEI | TCCGGA | 1 cut(s) | 1143 |
| BspLI | GGNNCC | 4 cut(s) | 72, 100, 514, 1222 |
| BspPI | GGATC | 2 cut(s) | 269, 1375 |
| BspT107I | GGYRCC | 1 cut(s) | 1220 |
| BsrDI | GCAATG | 4 cut(s) | 41, 120, 200, 729 |
| BsrFI | RCCGGY | 1 cut(s) | 194 |
| BsrGI | TGTACA | 3 cut(s) | 364, 476, 1273 |
| BsrI | ACTGG | 5 cut(s) | 75, 100, 391, 950, 1016 |
| BssAI | RCCGGY | 1 cut(s) | 194 |
| BssECI | CCNNGG | 5 cut(s) | 49, 159, 619, 905, 1239 |
| BssMI | GATC | 3 cut(s) | 28, 274, 1367 |
| BssNI | GRCGYC | 1 cut(s) | 1221 |
| BssT1I | CCWWGG | 2 cut(s) | 49, 1239 |
| Bst2UI | CCWGG | 3 cut(s) | 161, 166, 906 |
| Bst4CI | ACNGT | 6 cut(s) | 349, 446, 1064, 1150, 1171, 1351 |
| Bst6I | CTCTTC | 1 cut(s) | 809 |
| BstACI | GRCGYC | 1 cut(s) | 1221 |
| BstAUI | TGTACA | 3 cut(s) | 364, 476, 1273 |
| BstC8I | GCNNGC | 2 cut(s) | 415, 970 |
| BstDEI | CTNAG | 4 cut(s) | 177, 328, 1032, 1397 |
| BstEII | GGTNACC | 1 cut(s) | 226 |
| BstF5I | GGATG | 2 cut(s) | 246, 901 |
| BstH2I | RGCGCY | 1 cut(s) | 1224 |
| BstHHI | GCGC | 1 cut(s) | 1223 |
| BstKTI | GATC | 3 cut(s) | 31, 277, 1370 |
| BstMAI | GTCTC | 1 cut(s) | 241 |
| BstMBI | GATC | 3 cut(s) | 28, 274, 1367 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 381, 870, 946 |
| BstNI | CCWGG | 3 cut(s) | 161, 166, 906 |
| BstPI | GGTNACC | 1 cut(s) | 226 |
| BstSCI | CCNGG | 3 cut(s) | 159, 164, 904 |
| BstSFI | CTRYAG | 4 cut(s) | 262, 1006, 1167, 1257 |
| BstV1I | GCAGC | 5 cut(s) | 327, 397, 590, 851, 896 |
| BstX2I | RGATCY | 1 cut(s) | 274 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 722 |
| BstYI | RGATCY | 1 cut(s) | 274 |
| BsuI | GTATCC | 3 cut(s) | 481, 769, 1065 |
| BsuRI | GGCC | 4 cut(s) | 164, 618, 821, 1237 |
| BtsCI | GGATG | 2 cut(s) | 246, 901 |
| BtsI | GCAGTG | 1 cut(s) | 424 |
| BtsIMutI | CAGTG | 5 cut(s) | 82, 354, 384, 424, 1069 |
| Cac8I | GCNNGC | 2 cut(s) | 415, 970 |
| CaiI | CAGNNNCTG | 2 cut(s) | 353, 413 |
| CfoI | GCGC | 1 cut(s) | 1223 |
| Cfr10I | RCCGGY | 1 cut(s) | 194 |
| Cfr13I | GGNCC | 6 cut(s) | 99, 197, 300, 819, 1236, 1296 |
| Csp6I | GTAC | 6 cut(s) | 325, 365, 477, 518, 1267, 1274 |
| CviAII | CATG | 6 cut(s) | 26, 368, 474, 556, 586, 1293 |
| CviQI | GTAC | 6 cut(s) | 325, 365, 477, 518, 1267, 1274 |
| DdeI | CTNAG | 4 cut(s) | 177, 328, 1032, 1397 |
| DinI | GGCGCC | 1 cut(s) | 1222 |
| DpnI | GATC | 3 cut(s) | 30, 276, 1369 |
| DpnII | GATC | 3 cut(s) | 28, 274, 1367 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 106 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 809 |
| EarI | CTCTTC | 1 cut(s) | 809 |
| Eco130I | CCWWGG | 2 cut(s) | 49, 1239 |
| Eco32I | GATATC | 1 cut(s) | 998 |
| Eco47I | GGWCC | 4 cut(s) | 99, 197, 300, 1296 |
| Eco57I | CTGAAG | 1 cut(s) | 1114 |
| Eco91I | GGTNACC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 2 cut(s) | 300, 819 |
| EcoO65I | GGTNACC | 1 cut(s) | 226 |
| EcoRII | CCWGG | 3 cut(s) | 159, 164, 904 |
| EcoRV | GATATC | 1 cut(s) | 998 |
| EcoT14I | CCWWGG | 2 cut(s) | 49, 1239 |
| EgeI | GGCGCC | 1 cut(s) | 1222 |
| EheI | GGCGCC | 1 cut(s) | 1222 |
| ErhI | CCWWGG | 2 cut(s) | 49, 1239 |
| FaeI | CATG | 6 cut(s) | 29, 371, 477, 559, 589, 1296 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 311, 343, 1380 |
| FaqI | GGGAC | 4 cut(s) | 112, 740, 772, 1303 |
| FatI | CATG | 6 cut(s) | 25, 367, 473, 555, 585, 1292 |
| FauNDI | CATATG | 2 cut(s) | 104, 481 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 6 cut(s) | 341, 411, 579, 693, 865, 885 |
| FokI | GGATG | 2 cut(s) | 233, 908 |
| Fsp4HI | GCNGC | 6 cut(s) | 341, 411, 579, 693, 865, 885 |
| FspBI | CTAG | 4 cut(s) | 182, 212, 684, 1402 |
| GlaI | GCGC | 1 cut(s) | 1222 |
| GluI | GCNGC | 6 cut(s) | 341, 411, 579, 693, 865, 885 |
| GsuI | CTGGAG | 2 cut(s) | 187, 777 |
| HaeII | RGCGCY | 1 cut(s) | 1224 |
| HaeIII | GGCC | 4 cut(s) | 164, 618, 821, 1237 |
| HapII | CCGG | 3 cut(s) | 195, 921, 1144 |
| HhaI | GCGC | 1 cut(s) | 1223 |
| Hin1I | GRCGYC | 1 cut(s) | 1221 |
| Hin1II | CATG | 6 cut(s) | 29, 371, 477, 559, 589, 1296 |
| Hin6I | GCGC | 1 cut(s) | 1221 |
| HinP1I | GCGC | 1 cut(s) | 1221 |
| HinfI | GANTC | 3 cut(s) | 769, 910, 1123 |
| HpaII | CCGG | 3 cut(s) | 195, 921, 1144 |
| HphI | GGTGA | 2 cut(s) | 30, 220 |
| Hpy166II | GTNNAC | 1 cut(s) | 80 |
| Hpy188I | TCNGA | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 4 cut(s) | 669, 773, 916, 1144 |
| Hpy8I | GTNNAC | 1 cut(s) | 80 |
| HpyAV | CCTTC | 4 cut(s) | 69, 452, 1138, 1370 |
| HpyCH4III | ACNGT | 6 cut(s) | 349, 446, 1064, 1150, 1171, 1351 |
| HpyCH4IV | ACGT | 1 cut(s) | 779 |
| HpyCH4V | TGCA | 7 cut(s) | 343, 578, 677, 884, 972, 1067, 1178 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 381, 870, 946 |
| HpyF3I | CTNAG | 4 cut(s) | 177, 328, 1032, 1397 |
| HpySE526I | ACGT | 1 cut(s) | 779 |
| Hsp92I | GRCGYC | 1 cut(s) | 1221 |
| Hsp92II | CATG | 6 cut(s) | 29, 371, 477, 559, 589, 1296 |
| HspAI | GCGC | 1 cut(s) | 1221 |
| KasI | GGCGCC | 1 cut(s) | 1220 |
| Kpn2I | TCCGGA | 1 cut(s) | 1143 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 3 cut(s) | 28, 274, 1367 |
| LmnI | GCTCC | 3 cut(s) | 51, 512, 660 |
| Lsp1109I | GCAGC | 5 cut(s) | 327, 397, 590, 851, 896 |
| LweI | GCATC | 2 cut(s) | 198, 472 |
| MaeI | CTAG | 4 cut(s) | 182, 212, 684, 1402 |
| MaeII | ACGT | 1 cut(s) | 779 |
| MaeIII | GTNAC | 5 cut(s) | 36, 226, 531, 841, 1345 |
| MalI | GATC | 3 cut(s) | 30, 276, 1369 |
| MboI | GATC | 3 cut(s) | 28, 274, 1367 |
| MboII | GAAGA | 5 cut(s) | 23, 703, 826, 844, 971 |
| MfeI | CAATTG | 1 cut(s) | 720 |
| MflI | RGATCY | 1 cut(s) | 274 |
| MluCI | AATT | 6 cut(s) | 280, 390, 698, 720, 1173, 1284 |
| Mly113I | GGCGCC | 1 cut(s) | 1221 |
| MmeI | TCCRAC | 2 cut(s) | 264, 279 |
| MnlI | CCTC | 9 cut(s) | 260, 629, 691, 801, 810, 832, 869, 986, 1193 |
| MroI | TCCGGA | 1 cut(s) | 1143 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1127 |
| MseI | TTAA | 3 cut(s) | 654, 707, 782 |
| MspA1I | CMGCKG | 1 cut(s) | 410 |
| MspI | CCGG | 3 cut(s) | 195, 921, 1144 |
| MspR9I | CCNGG | 3 cut(s) | 161, 166, 906 |
| MunI | CAATTG | 1 cut(s) | 720 |
| Mva1269I | GAATGC | 1 cut(s) | 1322 |
| MvaI | CCWGG | 3 cut(s) | 161, 166, 906 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 381, 870, 946 |
| NarI | GGCGCC | 1 cut(s) | 1221 |
| NdeI | CATATG | 2 cut(s) | 104, 481 |
| NdeII | GATC | 3 cut(s) | 28, 274, 1367 |
| NlaIII | CATG | 6 cut(s) | 29, 371, 477, 559, 589, 1296 |
| NlaIV | GGNNCC | 4 cut(s) | 72, 100, 514, 1222 |
| NmeAIII | GCCGAG | 1 cut(s) | 600 |
| NmuCI | GTSAC | 5 cut(s) | 36, 226, 531, 841, 1345 |
| PctI | GAATGC | 1 cut(s) | 1322 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1127 |
| PfeI | GAWTC | 3 cut(s) | 769, 910, 1123 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1022, 1207, 1305 |
| PkrI | GCNGC | 6 cut(s) | 342, 412, 580, 694, 866, 886 |
| PluTI | GGCGCC | 1 cut(s) | 1224 |
| PpuMI | RGGWCCY | 1 cut(s) | 300 |
| PsiI | TTATAA | 1 cut(s) | 1385 |
| Psp5II | RGGWCCY | 1 cut(s) | 300 |
| Psp6I | CCWGG | 3 cut(s) | 159, 164, 904 |
| PspEI | GGTNACC | 1 cut(s) | 226 |
| PspGI | CCWGG | 3 cut(s) | 159, 164, 904 |
| PspN4I | GGNNCC | 4 cut(s) | 72, 100, 514, 1222 |
| PspPI | GGNCC | 6 cut(s) | 99, 197, 300, 819, 1236, 1296 |
| PspPPI | RGGWCCY | 1 cut(s) | 300 |
| PstNI | CAGNNNCTG | 2 cut(s) | 353, 413 |
| PsuI | RGATCY | 1 cut(s) | 274 |
| PvuII | CAGCTG | 1 cut(s) | 410 |
| RsaI | GTAC | 6 cut(s) | 326, 366, 478, 519, 1268, 1275 |
| RsaNI | GTAC | 6 cut(s) | 325, 365, 477, 518, 1267, 1274 |
| SaqAI | TTAA | 3 cut(s) | 654, 707, 782 |
| SatI | GCNGC | 6 cut(s) | 341, 411, 579, 693, 865, 885 |
| Sau3AI | GATC | 3 cut(s) | 28, 274, 1367 |
| Sau96I | GGNCC | 6 cut(s) | 99, 197, 300, 819, 1236, 1296 |
| ScrFI | CCNGG | 3 cut(s) | 161, 166, 906 |
| SfaNI | GCATC | 2 cut(s) | 198, 472 |
| SfcI | CTRYAG | 4 cut(s) | 262, 1006, 1167, 1257 |
| SfoI | GGCGCC | 1 cut(s) | 1222 |
| SinI | GGWCC | 4 cut(s) | 99, 197, 300, 1296 |
| Sse9I | AATT | 6 cut(s) | 280, 390, 698, 720, 1173, 1284 |
| SsiI | CCGC | 2 cut(s) | 692, 867 |
| SspDI | GGCGCC | 1 cut(s) | 1220 |
| SspMI | CTAG | 4 cut(s) | 182, 212, 684, 1402 |
| StyD4I | CCNGG | 3 cut(s) | 159, 164, 904 |
| StyI | CCWWGG | 2 cut(s) | 49, 1239 |
| TaaI | ACNGT | 6 cut(s) | 349, 446, 1064, 1150, 1171, 1351 |
| TaiI | ACGT | 1 cut(s) | 782 |
| TasI | AATT | 6 cut(s) | 280, 390, 698, 720, 1173, 1284 |
| TatI | WGTACW | 5 cut(s) | 324, 364, 476, 1266, 1273 |
| TauI | GCSGC | 1 cut(s) | 695 |
| TfiI | GAWTC | 3 cut(s) | 769, 910, 1123 |
| Tru1I | TTAA | 3 cut(s) | 654, 707, 782 |
| Tru9I | TTAA | 3 cut(s) | 654, 707, 782 |
| TscAI | CASTG | 5 cut(s) | 82, 354, 391, 424, 1069 |
| TseFI | GTSAC | 5 cut(s) | 36, 226, 531, 841, 1345 |
| TseI | GCWGC | 5 cut(s) | 340, 410, 578, 864, 884 |
| Tsp45I | GTSAC | 5 cut(s) | 36, 226, 531, 841, 1345 |
| TspDTI | ATGAA | 4 cut(s) | 462, 572, 827, 971 |
| TspRI | CASTG | 5 cut(s) | 82, 354, 391, 424, 1069 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1022, 1207, 1305 |
| VpaK11BI | GGWCC | 4 cut(s) | 99, 197, 300, 1296 |
| XapI | RAATTY | 1 cut(s) | 280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1127 |
| XspI | CTAG | 4 cut(s) | 182, 212, 684, 1402 |