Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 38 - 138 | 1.7e-20 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 94 |
| AccI | GTMKAC | 1 cut(s) | 406 |
| AciI | CCGC | 4 cut(s) | 94, 194, 197, 239 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 95, 419 |
| AgsI | TTSAA | 3 cut(s) | 31, 106, 260 |
| AhlI | ACTAGT | 1 cut(s) | 325 |
| AluBI | AGCT | 4 cut(s) | 9, 138, 353, 366 |
| AluI | AGCT | 4 cut(s) | 9, 138, 353, 366 |
| Ama87I | CYCGRG | 1 cut(s) | 412 |
| AoxI | GGCC | 1 cut(s) | 249 |
| ApeKI | GCWGC | 1 cut(s) | 350 |
| AspS9I | GGNCC | 1 cut(s) | 250 |
| AsuHPI | GGTGA | 4 cut(s) | 128, 194, 219, 400 |
| AvaI | CYCGRG | 1 cut(s) | 412 |
| BbvI | GCAGC | 1 cut(s) | 362 |
| BccI | CCATC | 2 cut(s) | 113, 241 |
| BcuI | ACTAGT | 1 cut(s) | 325 |
| BfaI | CTAG | 1 cut(s) | 326 |
| BisI | GCNGC | 2 cut(s) | 195, 351 |
| BlsI | GCNGC | 2 cut(s) | 196, 352 |
| BmeT110I | CYCGRG | 1 cut(s) | 412 |
| BmgT120I | GGNCC | 1 cut(s) | 250 |
| BsaWI | WCCGGW | 1 cut(s) | 88 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 95, 419 |
| Bse3DI | GCAATG | 2 cut(s) | 129, 189 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 95, 419 |
| BseMI | GCAATG | 2 cut(s) | 129, 189 |
| BseRI | GAGGAG | 1 cut(s) | 162 |
| BseXI | GCAGC | 1 cut(s) | 362 |
| BsgI | GTGCAG | 1 cut(s) | 369 |
| BshFI | GGCC | 1 cut(s) | 251 |
| BsiHKCI | CYCGRG | 1 cut(s) | 412 |
| BsiSI | CCGG | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 95, 419 |
| BsnI | GGCC | 1 cut(s) | 251 |
| BsoBI | CYCGRG | 1 cut(s) | 412 |
| BspACI | CCGC | 4 cut(s) | 94, 194, 197, 239 |
| BspANI | GGCC | 1 cut(s) | 251 |
| BsrBI | CCGCTC | 1 cut(s) | 94 |
| BsrDI | GCAATG | 2 cut(s) | 129, 189 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 2 cut(s) | 136, 333 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 335 |
| BstV1I | GCAGC | 1 cut(s) | 362 |
| BsuRI | GGCC | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 2 cut(s) | 136, 333 |
| Cfr13I | GGNCC | 1 cut(s) | 250 |
| CviAII | CATG | 3 cut(s) | 73, 236, 332 |
| CviJI | RGCY | 7 cut(s) | 9, 38, 53, 138, 251, 353, 366 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 38, 53, 138, 251, 353, 366 |
| Eco88I | CYCGRG | 1 cut(s) | 412 |
| EcoT22I | ATGCAT | 1 cut(s) | 78 |
| FaeI | CATG | 3 cut(s) | 76, 239, 335 |
| FatI | CATG | 3 cut(s) | 72, 235, 331 |
| FauI | CCCGC | 1 cut(s) | 87 |
| FblI | GTMKAC | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 2 cut(s) | 195, 351 |
| FokI | GGATG | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 2 cut(s) | 195, 351 |
| FspBI | CTAG | 1 cut(s) | 326 |
| GluI | GCNGC | 2 cut(s) | 195, 351 |
| HaeIII | GGCC | 1 cut(s) | 251 |
| HapII | CCGG | 1 cut(s) | 89 |
| Hin1II | CATG | 3 cut(s) | 76, 239, 335 |
| HindIII | AAGCTT | 2 cut(s) | 7, 364 |
| HinfI | GANTC | 1 cut(s) | 340 |
| HpaII | CCGG | 1 cut(s) | 89 |
| HphI | GGTGA | 4 cut(s) | 128, 194, 219, 400 |
| Hpy166II | GTNNAC | 1 cut(s) | 407 |
| Hpy188III | TCNNGA | 1 cut(s) | 31 |
| Hpy8I | GTNNAC | 1 cut(s) | 407 |
| HpyAV | CCTTC | 3 cut(s) | 28, 254, 385 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 7 cut(s) | 76, 111, 134, 217, 286, 331, 350 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 131 |
| Hsp92II | CATG | 3 cut(s) | 76, 239, 335 |
| LmnI | GCTCC | 1 cut(s) | 91 |
| LpnPI | CCDG | 1 cut(s) | 102 |
| Lsp1109I | GCAGC | 1 cut(s) | 362 |
| MaeI | CTAG | 1 cut(s) | 326 |
| MaeIII | GTNAC | 2 cut(s) | 182, 225 |
| MbiI | CCGCTC | 1 cut(s) | 94 |
| MfeI | CAATTG | 1 cut(s) | 218 |
| MluCI | AATT | 2 cut(s) | 218, 242 |
| MlyI | GAGTC | 1 cut(s) | 334 |
| MnlI | CCTC | 6 cut(s) | 43, 140, 143, 173, 263, 379 |
| Mph1103I | ATGCAT | 1 cut(s) | 78 |
| MseI | TTAA | 2 cut(s) | 5, 381 |
| MspA1I | CMGCKG | 1 cut(s) | 353 |
| MspI | CCGG | 1 cut(s) | 89 |
| MunI | CAATTG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 131 |
| NlaIII | CATG | 3 cut(s) | 76, 239, 335 |
| NmuCI | GTSAC | 2 cut(s) | 182, 225 |
| NsiI | ATGCAT | 1 cut(s) | 78 |
| NspI | RCATGY | 1 cut(s) | 335 |
| PaeI | GCATGC | 1 cut(s) | 335 |
| PkrI | GCNGC | 2 cut(s) | 196, 352 |
| PleI | GAGTC | 1 cut(s) | 334 |
| PpsI | GAGTC | 1 cut(s) | 334 |
| PspPI | GGNCC | 1 cut(s) | 250 |
| PvuII | CAGCTG | 1 cut(s) | 353 |
| SaqAI | TTAA | 2 cut(s) | 5, 381 |
| SatI | GCNGC | 2 cut(s) | 195, 351 |
| Sau96I | GGNCC | 1 cut(s) | 250 |
| SchI | GAGTC | 1 cut(s) | 334 |
| SpeI | ACTAGT | 1 cut(s) | 325 |
| SphI | GCATGC | 1 cut(s) | 335 |
| Sse9I | AATT | 2 cut(s) | 218, 242 |
| SsiI | CCGC | 4 cut(s) | 94, 194, 197, 239 |
| SspMI | CTAG | 1 cut(s) | 326 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TasI | AATT | 2 cut(s) | 218, 242 |
| TauI | GCSGC | 1 cut(s) | 197 |
| Tru1I | TTAA | 2 cut(s) | 5, 381 |
| Tru9I | TTAA | 2 cut(s) | 5, 381 |
| TseFI | GTSAC | 2 cut(s) | 182, 225 |
| TseI | GCWGC | 1 cut(s) | 350 |
| Tsp45I | GTSAC | 2 cut(s) | 182, 225 |
| TspDTI | ATGAA | 2 cut(s) | 178, 281 |
| XceI | RCATGY | 1 cut(s) | 335 |
| XmiI | GTMKAC | 1 cut(s) | 406 |
| XspI | CTAG | 1 cut(s) | 326 |
| Zsp2I | ATGCAT | 1 cut(s) | 78 |