Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 103 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 864 |
| AccI | GTMKAC | 1 cut(s) | 70 |
| AccII | CGCG | 2 cut(s) | 663, 669 |
| AciI | CCGC | 2 cut(s) | 667, 812 |
| AclWI | GGATC | 3 cut(s) | 143, 156, 549 |
| AcoI | YGGCCR | 2 cut(s) | 698, 855 |
| AcsI | RAATTY | 2 cut(s) | 375, 907 |
| AcyI | GRCGYC | 1 cut(s) | 848 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 211, 673, 710, 864, 889 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 3 cut(s) | 232, 379, 465 |
| AluBI | AGCT | 7 cut(s) | 37, 108, 301, 320, 434, 731, 819 |
| AluI | AGCT | 7 cut(s) | 37, 108, 301, 320, 434, 731, 819 |
| Alw26I | GTCTC | 4 cut(s) | 741, 749, 767, 914 |
| AlwI | GGATC | 3 cut(s) | 143, 156, 549 |
| Ama87I | CYCGRG | 1 cut(s) | 641 |
| AoxI | GGCC | 4 cut(s) | 202, 698, 855, 867 |
| ApeKI | GCWGC | 2 cut(s) | 77, 434 |
| ApoI | RAATTY | 2 cut(s) | 375, 907 |
| AseI | ATTAAT | 2 cut(s) | 261, 507 |
| AspS9I | GGNCC | 4 cut(s) | 203, 463, 676, 867 |
| AsuC2I | CCSGG | 2 cut(s) | 333, 656 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 39 |
| AvaI | CYCGRG | 1 cut(s) | 641 |
| AvaII | GGWCC | 2 cut(s) | 463, 676 |
| AxyI | CCTNAGG | 1 cut(s) | 279 |
| BamHI | GGATCC | 1 cut(s) | 148 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 328, 360 |
| BbvI | GCAGC | 2 cut(s) | 89, 421 |
| BccI | CCATC | 2 cut(s) | 194, 464 |
| BceAI | ACGGC | 1 cut(s) | 726 |
| BciT130I | CCWGG | 3 cut(s) | 234, 381, 467 |
| BclI | TGATCA | 1 cut(s) | 490 |
| BcnI | CCSGG | 2 cut(s) | 333, 656 |
| BcoDI | GTCTC | 4 cut(s) | 741, 749, 767, 914 |
| BfaI | CTAG | 2 cut(s) | 450, 903 |
| BfmI | CTRYAG | 2 cut(s) | 578, 836 |
| BfuAI | ACCTGC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 875 |
| BisI | GCNGC | 3 cut(s) | 78, 435, 813 |
| BlsI | GCNGC | 3 cut(s) | 79, 436, 814 |
| Bme1390I | CCNGG | 5 cut(s) | 234, 333, 381, 467, 656 |
| Bme18I | GGWCC | 2 cut(s) | 463, 676 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 1 cut(s) | 641 |
| BmgT120I | GGNCC | 4 cut(s) | 203, 463, 676, 867 |
| BmiI | GGNNCC | 2 cut(s) | 150, 677 |
| BmrFI | CCNGG | 5 cut(s) | 234, 333, 381, 467, 656 |
| BmrI | ACTGGG | 1 cut(s) | 682 |
| BmuI | ACTGGG | 1 cut(s) | 682 |
| BpmI | CTGGAG | 1 cut(s) | 82 |
| BpuMI | CCSGG | 2 cut(s) | 333, 656 |
| BsaHI | GRCGYC | 1 cut(s) | 848 |
| BsaI | GGTCTC | 1 cut(s) | 767 |
| BsaJI | CCNNGG | 2 cut(s) | 152, 709 |
| BsaWI | WCCGGW | 1 cut(s) | 912 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 211, 673, 710, 864, 889 |
| Bse1I | ACTGG | 1 cut(s) | 677 |
| Bse21I | CCTNAGG | 1 cut(s) | 279 |
| Bse3DI | GCAATG | 2 cut(s) | 493, 598 |
| BseBI | CCWGG | 3 cut(s) | 234, 381, 467 |
| BseDI | CCNNGG | 2 cut(s) | 152, 709 |
| BseGI | GGATG | 6 cut(s) | 205, 289, 328, 475, 502, 770 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 211, 673, 710, 864, 889 |
| BseMI | GCAATG | 2 cut(s) | 493, 598 |
| BseMII | CTCAG | 3 cut(s) | 270, 552, 778 |
| BseNI | ACTGG | 1 cut(s) | 677 |
| BseRI | GAGGAG | 2 cut(s) | 109, 683 |
| BseXI | GCAGC | 2 cut(s) | 89, 421 |
| Bsh1236I | CGCG | 2 cut(s) | 663, 669 |
| Bsh1285I | CGRYCG | 2 cut(s) | 667, 785 |
| BshFI | GGCC | 4 cut(s) | 204, 700, 857, 869 |
| BsiEI | CGRYCG | 2 cut(s) | 667, 785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 641 |
| BsiSI | CCGG | 6 cut(s) | 332, 656, 697, 826, 854, 913 |
| BslFI | GGGAC | 2 cut(s) | 150, 738 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 211, 673, 710, 864, 889 |
| BsmAI | GTCTC | 4 cut(s) | 741, 749, 767, 914 |
| BsmBI | CGTCTC | 2 cut(s) | 741, 749 |
| BsmFI | GGGAC | 2 cut(s) | 150, 738 |
| BsnI | GGCC | 4 cut(s) | 204, 700, 857, 869 |
| Bso31I | GGTCTC | 1 cut(s) | 767 |
| BsoBI | CYCGRG | 1 cut(s) | 641 |
| Bsp143I | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| Bsp19I | CCATGG | 2 cut(s) | 152, 709 |
| BspACI | CCGC | 2 cut(s) | 667, 812 |
| BspANI | GGCC | 4 cut(s) | 204, 700, 857, 869 |
| BspCNI | CTCAG | 3 cut(s) | 271, 553, 777 |
| BspFNI | CGCG | 2 cut(s) | 663, 669 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 2 cut(s) | 150, 677 |
| BspMAI | CTGCAG | 1 cut(s) | 840 |
| BspMI | ACCTGC | 1 cut(s) | 103 |
| BspPI | GGATC | 3 cut(s) | 143, 156, 549 |
| BspQI | GCTCTTC | 1 cut(s) | 421 |
| BspTNI | GGTCTC | 1 cut(s) | 767 |
| BsrDI | GCAATG | 2 cut(s) | 493, 598 |
| BsrI | ACTGG | 1 cut(s) | 677 |
| BssECI | CCNNGG | 2 cut(s) | 152, 709 |
| BssMI | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| BssNAI | GTATAC | 1 cut(s) | 71 |
| BssNI | GRCGYC | 1 cut(s) | 848 |
| BssT1I | CCWWGG | 2 cut(s) | 152, 709 |
| Bst1107I | GTATAC | 1 cut(s) | 71 |
| Bst2UI | CCWGG | 3 cut(s) | 234, 381, 467 |
| Bst4CI | ACNGT | 2 cut(s) | 311, 862 |
| Bst6I | CTCTTC | 1 cut(s) | 421 |
| BstACI | GRCGYC | 1 cut(s) | 848 |
| BstC8I | GCNNGC | 3 cut(s) | 58, 110, 817 |
| BstDEI | CTNAG | 3 cut(s) | 279, 561, 764 |
| BstDSI | CCRYGG | 2 cut(s) | 152, 709 |
| BstF5I | GGATG | 6 cut(s) | 205, 289, 328, 475, 502, 770 |
| BstFNI | CGCG | 2 cut(s) | 663, 669 |
| BstKTI | GATC | 6 cut(s) | 151, 493, 544, 618, 770, 785 |
| BstMAI | GTCTC | 4 cut(s) | 741, 749, 767, 914 |
| BstMBI | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| BstMCI | CGRYCG | 2 cut(s) | 667, 785 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 835, 875 |
| BstNI | CCWGG | 3 cut(s) | 234, 381, 467 |
| BstNSI | RCATGY | 2 cut(s) | 60, 77 |
| BstSCI | CCNGG | 5 cut(s) | 232, 331, 379, 465, 654 |
| BstSFI | CTRYAG | 2 cut(s) | 578, 836 |
| BstUI | CGCG | 2 cut(s) | 663, 669 |
| BstV1I | GCAGC | 2 cut(s) | 89, 421 |
| BstX2I | RGATCY | 2 cut(s) | 148, 541 |
| BstYI | RGATCY | 2 cut(s) | 148, 541 |
| BstZ17I | GTATAC | 1 cut(s) | 71 |
| Bsu36I | CCTNAGG | 1 cut(s) | 279 |
| BsuRI | GGCC | 4 cut(s) | 204, 700, 857, 869 |
| BtgI | CCRYGG | 2 cut(s) | 152, 709 |
| BtsCI | GGATG | 6 cut(s) | 205, 289, 328, 475, 502, 770 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| BveI | ACCTGC | 1 cut(s) | 103 |
| Cac8I | GCNNGC | 3 cut(s) | 58, 110, 817 |
| CciI | TCATGA | 1 cut(s) | 304 |
| Cfr13I | GGNCC | 4 cut(s) | 203, 463, 676, 867 |
| CseI | GACGC | 1 cut(s) | 856 |
| CviAII | CATG | 8 cut(s) | 57, 74, 153, 194, 305, 569, 710, 775 |
| DdeI | CTNAG | 3 cut(s) | 279, 561, 764 |
| DpnI | GATC | 6 cut(s) | 150, 492, 543, 617, 769, 784 |
| DpnII | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| DriI | GACNNNNNGTC | 1 cut(s) | 25 |
| EaeI | YGGCCR | 2 cut(s) | 698, 855 |
| Eam1104I | CTCTTC | 1 cut(s) | 421 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 2 cut(s) | 152, 709 |
| Eco31I | GGTCTC | 1 cut(s) | 767 |
| Eco47I | GGWCC | 2 cut(s) | 463, 676 |
| Eco81I | CCTNAGG | 1 cut(s) | 279 |
| Eco88I | CYCGRG | 1 cut(s) | 641 |
| EcoRII | CCWGG | 3 cut(s) | 232, 379, 465 |
| EcoT14I | CCWWGG | 2 cut(s) | 152, 709 |
| ErhI | CCWWGG | 2 cut(s) | 152, 709 |
| Esp3I | CGTCTC | 2 cut(s) | 741, 749 |
| FaeI | CATG | 8 cut(s) | 60, 77, 156, 197, 308, 572, 713, 778 |
| FaqI | GGGAC | 2 cut(s) | 150, 738 |
| FatI | CATG | 8 cut(s) | 56, 73, 152, 193, 304, 568, 709, 774 |
| FbaI | TGATCA | 1 cut(s) | 490 |
| FblI | GTMKAC | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 3 cut(s) | 78, 435, 813 |
| FokI | GGATG | 6 cut(s) | 212, 296, 315, 482, 509, 757 |
| Fsp4HI | GCNGC | 3 cut(s) | 78, 435, 813 |
| FspBI | CTAG | 2 cut(s) | 450, 903 |
| GluI | GCNGC | 3 cut(s) | 78, 435, 813 |
| GsuI | CTGGAG | 1 cut(s) | 82 |
| HaeIII | GGCC | 4 cut(s) | 204, 700, 857, 869 |
| HapII | CCGG | 6 cut(s) | 332, 656, 697, 826, 854, 913 |
| HgaI | GACGC | 1 cut(s) | 856 |
| Hin1I | GRCGYC | 1 cut(s) | 848 |
| Hin1II | CATG | 8 cut(s) | 60, 77, 156, 197, 308, 572, 713, 778 |
| HinfI | GANTC | 4 cut(s) | 157, 247, 456, 500 |
| HpaII | CCGG | 6 cut(s) | 332, 656, 697, 826, 854, 913 |
| HphI | GGTGA | 2 cut(s) | 29, 39 |
| Hpy166II | GTNNAC | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 4 cut(s) | 652, 680, 767, 846 |
| Hpy188III | TCNNGA | 3 cut(s) | 305, 494, 619 |
| Hpy8I | GTNNAC | 1 cut(s) | 71 |
| Hpy99I | CGWCG | 2 cut(s) | 684, 850 |
| HpyAV | CCTTC | 3 cut(s) | 60, 434, 590 |
| HpyCH4III | ACNGT | 2 cut(s) | 311, 862 |
| HpyCH4IV | ACGT | 1 cut(s) | 751 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 835, 875 |
| HpyF3I | CTNAG | 3 cut(s) | 279, 561, 764 |
| HpySE526I | ACGT | 1 cut(s) | 751 |
| Hsp92I | GRCGYC | 1 cut(s) | 848 |
| Hsp92II | CATG | 8 cut(s) | 60, 77, 156, 197, 308, 572, 713, 778 |
| Ksp22I | TGATCA | 1 cut(s) | 490 |
| Kzo9I | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| LguI | GCTCTTC | 1 cut(s) | 421 |
| Lsp1109I | GCAGC | 2 cut(s) | 89, 421 |
| MaeI | CTAG | 2 cut(s) | 450, 903 |
| MaeII | ACGT | 1 cut(s) | 751 |
| MaeIII | GTNAC | 2 cut(s) | 17, 225 |
| MalI | GATC | 6 cut(s) | 150, 492, 543, 617, 769, 784 |
| MboI | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| MboII | GAAGA | 5 cut(s) | 33, 170, 336, 408, 547 |
| MflI | RGATCY | 2 cut(s) | 148, 541 |
| MluCI | AATT | 2 cut(s) | 375, 907 |
| MlyI | GAGTC | 1 cut(s) | 465 |
| MmeI | TCCRAC | 4 cut(s) | 675, 703, 869, 897 |
| MseI | TTAA | 3 cut(s) | 261, 390, 507 |
| MslI | CAYNNNNRTG | 2 cut(s) | 198, 309 |
| MspA1I | CMGCKG | 1 cut(s) | 434 |
| MspI | CCGG | 6 cut(s) | 332, 656, 697, 826, 854, 913 |
| MspR9I | CCNGG | 5 cut(s) | 234, 333, 381, 467, 656 |
| MvaI | CCWGG | 3 cut(s) | 234, 381, 467 |
| MvnI | CGCG | 2 cut(s) | 663, 669 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 835, 875 |
| NciI | CCSGG | 2 cut(s) | 333, 656 |
| NcoI | CCATGG | 2 cut(s) | 152, 709 |
| NdeII | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| NlaIII | CATG | 8 cut(s) | 60, 77, 156, 197, 308, 572, 713, 778 |
| NlaIV | GGNNCC | 2 cut(s) | 150, 677 |
| NmeAIII | GCCGAG | 1 cut(s) | 895 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NspI | RCATGY | 2 cut(s) | 60, 77 |
| PaeI | GCATGC | 1 cut(s) | 60 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PciSI | GCTCTTC | 1 cut(s) | 421 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 451 |
| PfeI | GAWTC | 3 cut(s) | 157, 247, 500 |
| PflFI | GACNNNGTC | 1 cut(s) | 674 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 864 |
| PfoI | TCCNGGA | 1 cut(s) | 465 |
| PkrI | GCNGC | 3 cut(s) | 79, 436, 814 |
| Ple19I | CGATCG | 1 cut(s) | 785 |
| PleI | GAGTC | 1 cut(s) | 464 |
| PpsI | GAGTC | 1 cut(s) | 464 |
| PshBI | ATTAAT | 2 cut(s) | 261, 507 |
| Psp6I | CCWGG | 3 cut(s) | 232, 379, 465 |
| PspGI | CCWGG | 3 cut(s) | 232, 379, 465 |
| PspN4I | GGNNCC | 2 cut(s) | 150, 677 |
| PspPI | GGNCC | 4 cut(s) | 203, 463, 676, 867 |
| PstI | CTGCAG | 1 cut(s) | 840 |
| PsuI | RGATCY | 2 cut(s) | 148, 541 |
| PsyI | GACNNNGTC | 1 cut(s) | 674 |
| PvuI | CGATCG | 1 cut(s) | 785 |
| PvuII | CAGCTG | 1 cut(s) | 434 |
| RseI | CAYNNNNRTG | 2 cut(s) | 198, 309 |
| SapI | GCTCTTC | 1 cut(s) | 421 |
| SaqAI | TTAA | 3 cut(s) | 261, 390, 507 |
| SatI | GCNGC | 3 cut(s) | 78, 435, 813 |
| Sau3AI | GATC | 6 cut(s) | 148, 490, 541, 615, 767, 782 |
| Sau96I | GGNCC | 4 cut(s) | 203, 463, 676, 867 |
| SchI | GAGTC | 1 cut(s) | 465 |
| ScrFI | CCNGG | 5 cut(s) | 234, 333, 381, 467, 656 |
| SfcI | CTRYAG | 2 cut(s) | 578, 836 |
| SinI | GGWCC | 2 cut(s) | 463, 676 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 198, 309 |
| SphI | GCATGC | 1 cut(s) | 60 |
| Sse9I | AATT | 2 cut(s) | 375, 907 |
| SsiI | CCGC | 2 cut(s) | 667, 812 |
| SspMI | CTAG | 2 cut(s) | 450, 903 |
| StyD4I | CCNGG | 5 cut(s) | 232, 331, 379, 465, 654 |
| StyI | CCWWGG | 2 cut(s) | 152, 709 |
| TaaI | ACNGT | 2 cut(s) | 311, 862 |
| TaiI | ACGT | 1 cut(s) | 754 |
| TaqI | TCGA | 2 cut(s) | 618, 799 |
| TasI | AATT | 2 cut(s) | 375, 907 |
| TauI | GCSGC | 1 cut(s) | 815 |
| TfiI | GAWTC | 3 cut(s) | 157, 247, 500 |
| Tru1I | TTAA | 3 cut(s) | 261, 390, 507 |
| Tru9I | TTAA | 3 cut(s) | 261, 390, 507 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| TseI | GCWGC | 2 cut(s) | 77, 434 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 5 cut(s) | 33, 293, 386, 513, 609 |
| TspGWI | ACGGA | 1 cut(s) | 697 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Tth111I | GACNNNGTC | 1 cut(s) | 674 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 864 |
| VpaK11BI | GGWCC | 2 cut(s) | 463, 676 |
| VspI | ATTAAT | 2 cut(s) | 261, 507 |
| XapI | RAATTY | 2 cut(s) | 375, 907 |
| XceI | RCATGY | 2 cut(s) | 60, 77 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 240 |
| XmiI | GTMKAC | 1 cut(s) | 70 |
| XspI | CTAG | 2 cut(s) | 450, 903 |