Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 29 - 116 | 3.3e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 203 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AfaI | GTAC | 2 cut(s) | 151, 157 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 68, 188 |
| AgsI | TTSAA | 1 cut(s) | 253 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 245, 277 |
| AluBI | AGCT | 3 cut(s) | 59, 218, 310 |
| AluI | AGCT | 3 cut(s) | 59, 218, 310 |
| Alw26I | GTCTC | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 179 |
| ApeKI | GCWGC | 3 cut(s) | 301, 304, 307 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| AseI | ATTAAT | 1 cut(s) | 84 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| AvaII | GGWCC | 1 cut(s) | 265 |
| BbvI | GCAGC | 3 cut(s) | 313, 316, 319 |
| BccI | CCATC | 2 cut(s) | 45, 86 |
| BcoDI | GTCTC | 1 cut(s) | 20 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BfmI | CTRYAG | 2 cut(s) | 273, 313 |
| BisI | GCNGC | 3 cut(s) | 302, 305, 308 |
| BlsI | GCNGC | 3 cut(s) | 303, 306, 309 |
| BmcAI | AGTACT | 1 cut(s) | 151 |
| Bme18I | GGWCC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| BmiI | GGNNCC | 1 cut(s) | 267 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 68, 188 |
| Bse1I | ACTGG | 2 cut(s) | 157, 338 |
| Bse3DI | GCAATG | 1 cut(s) | 338 |
| BseGI | GGATG | 1 cut(s) | 97 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 68, 188 |
| BseMI | GCAATG | 1 cut(s) | 338 |
| BseNI | ACTGG | 2 cut(s) | 157, 338 |
| BseXI | GCAGC | 3 cut(s) | 313, 316, 319 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshFI | GGCC | 1 cut(s) | 181 |
| BslFI | GGGAC | 1 cut(s) | 251 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 68, 188 |
| BsmAI | GTCTC | 1 cut(s) | 20 |
| BsmFI | GGGAC | 1 cut(s) | 251 |
| BsmI | GAATGC | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 181 |
| BspACI | CCGC | 1 cut(s) | 203 |
| BspANI | GGCC | 1 cut(s) | 181 |
| BspLI | GGNNCC | 1 cut(s) | 267 |
| BspMAI | CTGCAG | 1 cut(s) | 317 |
| BsrDI | GCAATG | 1 cut(s) | 338 |
| BsrI | ACTGG | 2 cut(s) | 157, 338 |
| BstC8I | GCNNGC | 1 cut(s) | 317 |
| BstF5I | GGATG | 1 cut(s) | 97 |
| BstMAI | GTCTC | 1 cut(s) | 20 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 209, 307, 316 |
| BstNSI | RCATGY | 1 cut(s) | 212 |
| BstSFI | CTRYAG | 2 cut(s) | 273, 313 |
| BstV1I | GCAGC | 3 cut(s) | 313, 316, 319 |
| BsuRI | GGCC | 1 cut(s) | 181 |
| BtsCI | GGATG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| Csp6I | GTAC | 2 cut(s) | 150, 156 |
| CviAII | CATG | 1 cut(s) | 209 |
| CviJI | RGCY | 6 cut(s) | 59, 132, 181, 218, 224, 310 |
| CviKI_1 | RGCY | 6 cut(s) | 59, 132, 181, 218, 224, 310 |
| CviQI | GTAC | 2 cut(s) | 150, 156 |
| EciI | GGCGGA | 1 cut(s) | 218 |
| Eco147I | AGGCCT | 1 cut(s) | 181 |
| Eco47I | GGWCC | 1 cut(s) | 265 |
| FaeI | CATG | 1 cut(s) | 212 |
| FaiI | YATR | 6 cut(s) | 78, 161, 210, 275, 321, 365 |
| FaqI | GGGAC | 1 cut(s) | 251 |
| FatI | CATG | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 3 cut(s) | 302, 305, 308 |
| FokI | GGATG | 1 cut(s) | 104 |
| Fsp4HI | GCNGC | 3 cut(s) | 302, 305, 308 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GluI | GCNGC | 3 cut(s) | 302, 305, 308 |
| HaeIII | GGCC | 1 cut(s) | 181 |
| Hin1II | CATG | 1 cut(s) | 212 |
| HinfI | GANTC | 2 cut(s) | 253, 287 |
| HpyAV | CCTTC | 2 cut(s) | 112, 171 |
| HpyCH4V | TGCA | 4 cut(s) | 167, 248, 301, 315 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 209, 307, 316 |
| Hsp92II | CATG | 1 cut(s) | 212 |
| LmnI | GCTCC | 1 cut(s) | 64 |
| LpnPI | CCDG | 8 cut(s) | 50, 75, 138, 153, 174, 206, 301, 319 |
| Lsp1109I | GCAGC | 3 cut(s) | 313, 316, 319 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MluCI | AATT | 1 cut(s) | 230 |
| MnlI | CCTC | 2 cut(s) | 164, 192 |
| MseI | TTAA | 2 cut(s) | 84, 102 |
| Mva1269I | GAATGC | 1 cut(s) | 38 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 209, 307, 316 |
| NlaIII | CATG | 1 cut(s) | 212 |
| NlaIV | GGNNCC | 1 cut(s) | 267 |
| NspI | RCATGY | 1 cut(s) | 212 |
| PceI | AGGCCT | 1 cut(s) | 181 |
| PctI | GAATGC | 1 cut(s) | 38 |
| PfeI | GAWTC | 2 cut(s) | 253, 287 |
| PkrI | GCNGC | 3 cut(s) | 303, 306, 309 |
| PshBI | ATTAAT | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 1 cut(s) | 267 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| PstI | CTGCAG | 1 cut(s) | 317 |
| RsaI | GTAC | 2 cut(s) | 151, 157 |
| RsaNI | GTAC | 2 cut(s) | 150, 156 |
| SaqAI | TTAA | 2 cut(s) | 84, 102 |
| SatI | GCNGC | 3 cut(s) | 302, 305, 308 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| ScaI | AGTACT | 1 cut(s) | 151 |
| SetI | ASST | 3 cut(s) | 61, 220, 312 |
| SfcI | CTRYAG | 2 cut(s) | 273, 313 |
| SinI | GGWCC | 1 cut(s) | 265 |
| Sse9I | AATT | 1 cut(s) | 230 |
| SseBI | AGGCCT | 1 cut(s) | 181 |
| SsiI | CCGC | 1 cut(s) | 203 |
| SspMI | CTAG | 1 cut(s) | 45 |
| StuI | AGGCCT | 1 cut(s) | 181 |
| TaqI | TCGA | 1 cut(s) | 49 |
| TasI | AATT | 1 cut(s) | 230 |
| TatI | WGTACW | 1 cut(s) | 149 |
| TfiI | GAWTC | 2 cut(s) | 253, 287 |
| Tru1I | TTAA | 2 cut(s) | 84, 102 |
| Tru9I | TTAA | 2 cut(s) | 84, 102 |
| TseI | GCWGC | 3 cut(s) | 301, 304, 307 |
| VpaK11BI | GGWCC | 1 cut(s) | 265 |
| VspI | ATTAAT | 1 cut(s) | 84 |
| XapI | RAATTY | 1 cut(s) | 230 |
| XceI | RCATGY | 1 cut(s) | 212 |
| XspI | CTAG | 1 cut(s) | 45 |
| ZrmI | AGTACT | 1 cut(s) | 151 |