Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 85 - 178 | 1.3e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 34, 47, 234 |
| AcoI | YGGCCR | 1 cut(s) | 381 |
| AcsI | RAATTY | 1 cut(s) | 539 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AgsI | TTSAA | 2 cut(s) | 219, 248 |
| AjnI | CCWGG | 2 cut(s) | 366, 546 |
| AluBI | AGCT | 5 cut(s) | 129, 188, 329, 403, 495 |
| AluI | AGCT | 5 cut(s) | 129, 188, 329, 403, 495 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AlwI | GGATC | 3 cut(s) | 34, 47, 234 |
| AoxI | GGCC | 3 cut(s) | 158, 239, 381 |
| ApeKI | GCWGC | 2 cut(s) | 329, 492 |
| ApoI | RAATTY | 1 cut(s) | 539 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 504 |
| AspS9I | GGNCC | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 334 |
| AxyI | CCTNAGG | 1 cut(s) | 155 |
| BalI | TGGCCA | 1 cut(s) | 383 |
| BamHI | GGATCC | 1 cut(s) | 39 |
| BbvI | GCAGC | 2 cut(s) | 316, 504 |
| BccI | CCATC | 3 cut(s) | 166, 353, 392 |
| BciT130I | CCWGG | 2 cut(s) | 368, 548 |
| BclI | TGATCA | 1 cut(s) | 178 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 2 cut(s) | 102, 326 |
| BisI | GCNGC | 2 cut(s) | 330, 493 |
| BlsI | GCNGC | 2 cut(s) | 331, 494 |
| Bme1390I | CCNGG | 2 cut(s) | 368, 548 |
| BmgT120I | GGNCC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 1 cut(s) | 41 |
| BmrFI | CCNGG | 2 cut(s) | 368, 548 |
| BmsI | GCATC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 2 cut(s) | 76, 490 |
| Bsa29I | ATCGAT | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 366, 391 |
| Bse1I | ACTGG | 1 cut(s) | 493 |
| Bse21I | CCTNAGG | 1 cut(s) | 155 |
| BseBI | CCWGG | 2 cut(s) | 368, 548 |
| BseCI | ATCGAT | 1 cut(s) | 170 |
| BseDI | CCNNGG | 3 cut(s) | 54, 366, 391 |
| BseGI | GGATG | 3 cut(s) | 19, 181, 384 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 1 cut(s) | 493 |
| BseXI | GCAGC | 2 cut(s) | 316, 504 |
| BseYI | CCCAGC | 2 cut(s) | 403, 495 |
| BshFI | GGCC | 3 cut(s) | 160, 241, 383 |
| BshVI | ATCGAT | 1 cut(s) | 170 |
| BslFI | GGGAC | 2 cut(s) | 224, 307 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsmFI | GGGAC | 2 cut(s) | 224, 307 |
| BsnI | GGCC | 3 cut(s) | 160, 241, 383 |
| Bsp143I | GATC | 4 cut(s) | 39, 87, 178, 226 |
| BspANI | GGCC | 3 cut(s) | 160, 241, 383 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspDI | ATCGAT | 1 cut(s) | 170 |
| BspLI | GGNNCC | 1 cut(s) | 41 |
| BspPI | GGATC | 3 cut(s) | 34, 47, 234 |
| BsrI | ACTGG | 1 cut(s) | 493 |
| BssECI | CCNNGG | 3 cut(s) | 54, 366, 391 |
| BssMI | GATC | 4 cut(s) | 39, 87, 178, 226 |
| Bst2UI | CCWGG | 2 cut(s) | 368, 548 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 298 |
| BstDEI | CTNAG | 3 cut(s) | 155, 195, 336 |
| BstDSI | CCRYGG | 2 cut(s) | 54, 391 |
| BstF5I | GGATG | 3 cut(s) | 19, 181, 384 |
| BstKTI | GATC | 4 cut(s) | 42, 90, 181, 229 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 4 cut(s) | 39, 87, 178, 226 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 25, 238 |
| BstNI | CCWGG | 2 cut(s) | 368, 548 |
| BstSCI | CCNGG | 2 cut(s) | 366, 546 |
| BstV1I | GCAGC | 2 cut(s) | 316, 504 |
| BstX2I | RGATCY | 1 cut(s) | 39 |
| BstYI | RGATCY | 1 cut(s) | 39 |
| Bsu15I | ATCGAT | 1 cut(s) | 170 |
| Bsu36I | CCTNAGG | 1 cut(s) | 155 |
| BsuRI | GGCC | 3 cut(s) | 160, 241, 383 |
| BsuTUI | ATCGAT | 1 cut(s) | 170 |
| BtgI | CCRYGG | 2 cut(s) | 54, 391 |
| BtsCI | GGATG | 3 cut(s) | 19, 181, 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| Cfr13I | GGNCC | 1 cut(s) | 159 |
| ClaI | ATCGAT | 1 cut(s) | 170 |
| CviAII | CATG | 1 cut(s) | 433 |
| DdeI | CTNAG | 3 cut(s) | 155, 195, 336 |
| DpnI | GATC | 4 cut(s) | 41, 89, 180, 228 |
| DpnII | GATC | 4 cut(s) | 39, 87, 178, 226 |
| EaeI | YGGCCR | 1 cut(s) | 381 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| Eco81I | CCTNAGG | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRII | CCWGG | 2 cut(s) | 366, 546 |
| FaeI | CATG | 1 cut(s) | 436 |
| FaiI | YATR | 4 cut(s) | 21, 191, 267, 434 |
| FaqI | GGGAC | 2 cut(s) | 224, 307 |
| FatI | CATG | 1 cut(s) | 432 |
| FbaI | TGATCA | 1 cut(s) | 178 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 493 |
| FokI | GGATG | 3 cut(s) | 26, 188, 371 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 493 |
| FspBI | CTAG | 2 cut(s) | 102, 326 |
| GluI | GCNGC | 2 cut(s) | 330, 493 |
| GsaI | CCCAGC | 2 cut(s) | 407, 499 |
| HaeIII | GGCC | 3 cut(s) | 160, 241, 383 |
| Hin1II | CATG | 1 cut(s) | 436 |
| HindIII | AAGCTT | 1 cut(s) | 127 |
| HinfI | GANTC | 5 cut(s) | 110, 440, 446, 455, 476 |
| HphI | GGTGA | 2 cut(s) | 290, 334 |
| Hpy166II | GTNNAC | 1 cut(s) | 342 |
| Hpy188I | TCNGA | 2 cut(s) | 196, 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 342 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 298 |
| HpyCH4IV | ACGT | 2 cut(s) | 253, 360 |
| HpyCH4V | TGCA | 2 cut(s) | 19, 290 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 25, 238 |
| HpyF3I | CTNAG | 3 cut(s) | 155, 195, 336 |
| HpySE526I | ACGT | 2 cut(s) | 253, 360 |
| Hsp92II | CATG | 1 cut(s) | 436 |
| Ksp22I | TGATCA | 1 cut(s) | 178 |
| Kzo9I | GATC | 4 cut(s) | 39, 87, 178, 226 |
| LpnPI | CCDG | 7 cut(s) | 276, 353, 380, 389, 474, 481, 533 |
| Lsp1109I | GCAGC | 2 cut(s) | 316, 504 |
| LweI | GCATC | 1 cut(s) | 291 |
| MaeI | CTAG | 2 cut(s) | 102, 326 |
| MaeII | ACGT | 2 cut(s) | 253, 360 |
| MaeIII | GTNAC | 2 cut(s) | 59, 356 |
| MalI | GATC | 4 cut(s) | 41, 89, 180, 228 |
| MboI | GATC | 4 cut(s) | 39, 87, 178, 226 |
| MflI | RGATCY | 1 cut(s) | 39 |
| MlsI | TGGCCA | 1 cut(s) | 383 |
| MluCI | AATT | 1 cut(s) | 539 |
| MluNI | TGGCCA | 1 cut(s) | 383 |
| MmeI | TCCRAC | 1 cut(s) | 462 |
| MnlI | CCTC | 6 cut(s) | 55, 73, 274, 310, 398, 465 |
| Mox20I | TGGCCA | 1 cut(s) | 383 |
| MroXI | GAANNNNTTC | 1 cut(s) | 504 |
| MscI | TGGCCA | 1 cut(s) | 383 |
| MseI | TTAA | 2 cut(s) | 50, 116 |
| Msp20I | TGGCCA | 1 cut(s) | 383 |
| MspA1I | CMGCKG | 2 cut(s) | 403, 495 |
| MspR9I | CCNGG | 2 cut(s) | 368, 548 |
| MvaI | CCWGG | 2 cut(s) | 368, 548 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 25, 238 |
| NdeII | GATC | 4 cut(s) | 39, 87, 178, 226 |
| NlaIII | CATG | 1 cut(s) | 436 |
| NlaIV | GGNNCC | 1 cut(s) | 41 |
| NmuCI | GTSAC | 1 cut(s) | 59 |
| PdmI | GAANNNNTTC | 1 cut(s) | 504 |
| PfeI | GAWTC | 5 cut(s) | 110, 440, 446, 455, 476 |
| PfoI | TCCNGGA | 1 cut(s) | 546 |
| PkrI | GCNGC | 2 cut(s) | 331, 494 |
| Psp6I | CCWGG | 2 cut(s) | 366, 546 |
| PspFI | CCCAGC | 2 cut(s) | 403, 495 |
| PspGI | CCWGG | 2 cut(s) | 366, 546 |
| PspN4I | GGNNCC | 1 cut(s) | 41 |
| PspPI | GGNCC | 1 cut(s) | 159 |
| PsuI | RGATCY | 1 cut(s) | 39 |
| PvuII | CAGCTG | 2 cut(s) | 403, 495 |
| SaqAI | TTAA | 2 cut(s) | 50, 116 |
| SatI | GCNGC | 2 cut(s) | 330, 493 |
| Sau3AI | GATC | 4 cut(s) | 39, 87, 178, 226 |
| Sau96I | GGNCC | 1 cut(s) | 159 |
| ScrFI | CCNGG | 2 cut(s) | 368, 548 |
| SfaNI | GCATC | 1 cut(s) | 291 |
| SmlI | CTYRAG | 2 cut(s) | 91, 469 |
| SmoI | CTYRAG | 2 cut(s) | 91, 469 |
| Sse9I | AATT | 1 cut(s) | 539 |
| SspMI | CTAG | 2 cut(s) | 102, 326 |
| StyD4I | CCNGG | 2 cut(s) | 366, 546 |
| TaaI | ACNGT | 2 cut(s) | 55, 298 |
| TaiI | ACGT | 2 cut(s) | 256, 363 |
| TaqI | TCGA | 2 cut(s) | 170, 453 |
| TasI | AATT | 1 cut(s) | 539 |
| TfiI | GAWTC | 5 cut(s) | 110, 440, 446, 455, 476 |
| Tru1I | TTAA | 2 cut(s) | 50, 116 |
| Tru9I | TTAA | 2 cut(s) | 50, 116 |
| TscAI | CASTG | 1 cut(s) | 303 |
| TseFI | GTSAC | 1 cut(s) | 59 |
| TseI | GCWGC | 2 cut(s) | 329, 492 |
| Tsp45I | GTSAC | 1 cut(s) | 59 |
| TspRI | CASTG | 1 cut(s) | 303 |
| XapI | RAATTY | 1 cut(s) | 539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 504 |
| XspI | CTAG | 2 cut(s) | 102, 326 |