Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 446 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 676 |
| AccBSI | CCGCTC | 2 cut(s) | 645, 721 |
| AccI | GTMKAC | 1 cut(s) | 698 |
| AccII | CGCG | 1 cut(s) | 850 |
| AciI | CCGC | 6 cut(s) | 34, 645, 704, 719, 848, 850 |
| AclWI | GGATC | 2 cut(s) | 714, 791 |
| AcoI | YGGCCR | 2 cut(s) | 584, 841 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AcyI | GRCGYC | 1 cut(s) | 447 |
| AfaI | GTAC | 4 cut(s) | 59, 384, 418, 731 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 283, 497, 676, 863, 898 |
| AgsI | TTSAA | 6 cut(s) | 43, 164, 322, 362, 394, 567 |
| AjnI | CCWGG | 1 cut(s) | 236 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 56, 88, 404, 436 |
| AluBI | AGCT | 4 cut(s) | 122, 134, 436, 755 |
| AluI | AGCT | 4 cut(s) | 122, 134, 436, 755 |
| Alw21I | GWGCWC | 1 cut(s) | 829 |
| AlwI | GGATC | 2 cut(s) | 714, 791 |
| AoxI | GGCC | 3 cut(s) | 525, 584, 841 |
| ApeKI | GCWGC | 3 cut(s) | 31, 193, 752 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 562 |
| AspLEI | GCGC | 2 cut(s) | 449, 507 |
| AspS9I | GGNCC | 3 cut(s) | 36, 525, 716 |
| AsuHPI | GGTGA | 4 cut(s) | 233, 528, 530, 878 |
| AvaII | GGWCC | 2 cut(s) | 36, 716 |
| AxyI | CCTNAGG | 1 cut(s) | 279 |
| BanI | GGYRCC | 1 cut(s) | 446 |
| BbsI | GAAGAC | 1 cut(s) | 39 |
| Bbv12I | GWGCWC | 1 cut(s) | 829 |
| BbvI | GCAGC | 3 cut(s) | 18, 205, 764 |
| BccI | CCATC | 4 cut(s) | 196, 515, 595, 670 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 13, 47 |
| BciT130I | CCWGG | 1 cut(s) | 238 |
| BciVI | GTATCC | 1 cut(s) | 590 |
| BfoI | RGCGCY | 1 cut(s) | 450 |
| BfuI | GTATCC | 1 cut(s) | 590 |
| BisI | GCNGC | 3 cut(s) | 32, 194, 753 |
| BlpI | GCTNAGC | 2 cut(s) | 339, 432 |
| BlsI | GCNGC | 3 cut(s) | 33, 195, 754 |
| BmcAI | AGTACT | 1 cut(s) | 731 |
| Bme1390I | CCNGG | 1 cut(s) | 238 |
| Bme18I | GGWCC | 2 cut(s) | 36, 716 |
| BmgT120I | GGNCC | 3 cut(s) | 36, 525, 716 |
| BmiI | GGNNCC | 2 cut(s) | 448, 526 |
| BmrFI | CCNGG | 1 cut(s) | 238 |
| BmsI | GCATC | 2 cut(s) | 180, 223 |
| BpiI | GAAGAC | 1 cut(s) | 39 |
| BpmI | CTGGAG | 3 cut(s) | 31, 754, 813 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 339, 432 |
| BpuEI | CTTGAG | 1 cut(s) | 707 |
| BsaHI | GRCGYC | 1 cut(s) | 447 |
| BsaJI | CCNNGG | 1 cut(s) | 848 |
| BsaWI | WCCGGW | 1 cut(s) | 891 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 283, 497, 676, 863, 898 |
| Bse118I | RCCGGY | 1 cut(s) | 586 |
| Bse1I | ACTGG | 5 cut(s) | 14, 32, 737, 830, 837 |
| Bse21I | CCTNAGG | 1 cut(s) | 279 |
| Bse3DI | GCAATG | 1 cut(s) | 329 |
| BseBI | CCWGG | 1 cut(s) | 238 |
| BseDI | CCNNGG | 1 cut(s) | 848 |
| BseGI | GGATG | 3 cut(s) | 238, 606, 808 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 283, 497, 676, 863, 898 |
| BseMI | GCAATG | 1 cut(s) | 329 |
| BseMII | CTCAG | 2 cut(s) | 240, 423 |
| BseNI | ACTGG | 5 cut(s) | 14, 32, 737, 830, 837 |
| BseRI | GAGGAG | 1 cut(s) | 560 |
| BseX3I | CGGCCG | 1 cut(s) | 584 |
| BseXI | GCAGC | 3 cut(s) | 18, 205, 764 |
| BsgI | GTGCAG | 2 cut(s) | 504, 771 |
| Bsh1236I | CGCG | 1 cut(s) | 850 |
| Bsh1285I | CGRYCG | 2 cut(s) | 587, 848 |
| BshFI | GGCC | 3 cut(s) | 527, 586, 843 |
| BshNI | GGYRCC | 1 cut(s) | 446 |
| BsiEI | CGRYCG | 2 cut(s) | 587, 848 |
| BsiHKAI | GWGCWC | 1 cut(s) | 829 |
| BsiSI | CCGG | 3 cut(s) | 583, 587, 892 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 283, 497, 676, 863, 898 |
| BsnI | GGCC | 3 cut(s) | 527, 586, 843 |
| Bsp1286I | GDGCHC | 1 cut(s) | 829 |
| Bsp143I | GATC | 2 cut(s) | 706, 783 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 339, 432 |
| BspACI | CCGC | 6 cut(s) | 34, 645, 704, 719, 848, 850 |
| BspANI | GGCC | 3 cut(s) | 527, 586, 843 |
| BspCNI | CTCAG | 2 cut(s) | 239, 424 |
| BspFNI | CGCG | 1 cut(s) | 850 |
| BspLI | GGNNCC | 2 cut(s) | 448, 526 |
| BspPI | GGATC | 2 cut(s) | 714, 791 |
| BspT107I | GGYRCC | 1 cut(s) | 446 |
| BsrBI | CCGCTC | 2 cut(s) | 645, 721 |
| BsrDI | GCAATG | 1 cut(s) | 329 |
| BsrFI | RCCGGY | 1 cut(s) | 586 |
| BsrI | ACTGG | 5 cut(s) | 14, 32, 737, 830, 837 |
| BssAI | RCCGGY | 1 cut(s) | 586 |
| BssECI | CCNNGG | 1 cut(s) | 848 |
| BssMI | GATC | 2 cut(s) | 706, 783 |
| BssNI | GRCGYC | 1 cut(s) | 447 |
| Bst2UI | CCWGG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 3 cut(s) | 387, 540, 908 |
| BstACI | GRCGYC | 1 cut(s) | 447 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 2 cut(s) | 336, 588 |
| BstDEI | CTNAG | 5 cut(s) | 183, 226, 279, 339, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 848 |
| BstEII | GGTNACC | 3 cut(s) | 625, 647, 866 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 495 |
| BstF5I | GGATG | 3 cut(s) | 238, 606, 808 |
| BstFNI | CGCG | 1 cut(s) | 850 |
| BstH2I | RGCGCY | 1 cut(s) | 450 |
| BstHHI | GCGC | 2 cut(s) | 449, 507 |
| BstKTI | GATC | 2 cut(s) | 709, 786 |
| BstMBI | GATC | 2 cut(s) | 706, 783 |
| BstMCI | CGRYCG | 2 cut(s) | 587, 848 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 335, 340 |
| BstNI | CCWGG | 1 cut(s) | 238 |
| BstNSI | RCATGY | 1 cut(s) | 313 |
| BstPI | GGTNACC | 3 cut(s) | 625, 647, 866 |
| BstSCI | CCNGG | 1 cut(s) | 236 |
| BstUI | CGCG | 1 cut(s) | 850 |
| BstV1I | GCAGC | 3 cut(s) | 18, 205, 764 |
| BstV2I | GAAGAC | 1 cut(s) | 39 |
| BstZI | CGGCCG | 1 cut(s) | 584 |
| Bsu36I | CCTNAGG | 1 cut(s) | 279 |
| BsuI | GTATCC | 1 cut(s) | 590 |
| BsuRI | GGCC | 3 cut(s) | 527, 586, 843 |
| BtgI | CCRYGG | 1 cut(s) | 848 |
| BtsCI | GGATG | 3 cut(s) | 238, 606, 808 |
| BtsI | GCAGTG | 1 cut(s) | 492 |
| BtsIMutI | CAGTG | 3 cut(s) | 492, 837, 844 |
| Cac8I | GCNNGC | 2 cut(s) | 336, 588 |
| CfoI | GCGC | 2 cut(s) | 449, 507 |
| Cfr10I | RCCGGY | 1 cut(s) | 586 |
| Cfr13I | GGNCC | 3 cut(s) | 36, 525, 716 |
| Cfr42I | CCGCGG | 1 cut(s) | 851 |
| Csp6I | GTAC | 4 cut(s) | 58, 383, 417, 730 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 197, 232 |
| CviAII | CATG | 1 cut(s) | 310 |
| CviQI | GTAC | 4 cut(s) | 58, 383, 417, 730 |
| DdeI | CTNAG | 5 cut(s) | 183, 226, 279, 339, 432 |
| DinI | GGCGCC | 1 cut(s) | 448 |
| DpnI | GATC | 2 cut(s) | 708, 785 |
| DpnII | GATC | 2 cut(s) | 706, 783 |
| EaeI | YGGCCR | 2 cut(s) | 584, 841 |
| EagI | CGGCCG | 1 cut(s) | 584 |
| EclXI | CGGCCG | 1 cut(s) | 584 |
| Eco47I | GGWCC | 2 cut(s) | 36, 716 |
| Eco52I | CGGCCG | 1 cut(s) | 584 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| Eco81I | CCTNAGG | 1 cut(s) | 279 |
| Eco91I | GGTNACC | 3 cut(s) | 625, 647, 866 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 495 |
| EcoO65I | GGTNACC | 3 cut(s) | 625, 647, 866 |
| EcoRII | CCWGG | 1 cut(s) | 236 |
| EcoT22I | ATGCAT | 1 cut(s) | 315 |
| EgeI | GGCGCC | 1 cut(s) | 448 |
| EheI | GGCGCC | 1 cut(s) | 448 |
| FaeI | CATG | 1 cut(s) | 313 |
| FaiI | YATR | 6 cut(s) | 147, 311, 473, 615, 633, 663 |
| FatI | CATG | 1 cut(s) | 309 |
| FblI | GTMKAC | 1 cut(s) | 698 |
| Fnu4HI | GCNGC | 3 cut(s) | 32, 194, 753 |
| FokI | GGATG | 3 cut(s) | 245, 613, 795 |
| Fsp4HI | GCNGC | 3 cut(s) | 32, 194, 753 |
| GlaI | GCGC | 2 cut(s) | 448, 506 |
| GluI | GCNGC | 3 cut(s) | 32, 194, 753 |
| GsuI | CTGGAG | 3 cut(s) | 31, 754, 813 |
| HaeII | RGCGCY | 1 cut(s) | 450 |
| HaeIII | GGCC | 3 cut(s) | 527, 586, 843 |
| HapII | CCGG | 3 cut(s) | 583, 587, 892 |
| HhaI | GCGC | 2 cut(s) | 449, 507 |
| Hin1I | GRCGYC | 1 cut(s) | 447 |
| Hin1II | CATG | 1 cut(s) | 313 |
| Hin6I | GCGC | 2 cut(s) | 447, 505 |
| HinP1I | GCGC | 2 cut(s) | 447, 505 |
| HincII | GTYRAC | 1 cut(s) | 699 |
| HindII | GTYRAC | 1 cut(s) | 699 |
| HinfI | GANTC | 6 cut(s) | 224, 358, 371, 853, 874, 895 |
| HpaII | CCGG | 3 cut(s) | 583, 587, 892 |
| HphI | GGTGA | 4 cut(s) | 233, 528, 530, 878 |
| Hpy166II | GTNNAC | 2 cut(s) | 456, 699 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 858 |
| Hpy188III | TCNNGA | 2 cut(s) | 19, 724 |
| Hpy8I | GTNNAC | 2 cut(s) | 456, 699 |
| Hpy99I | CGWCG | 2 cut(s) | 700, 862 |
| HpyAV | CCTTC | 4 cut(s) | 281, 388, 430, 582 |
| HpyCH4III | ACNGT | 3 cut(s) | 387, 540, 908 |
| HpyCH4IV | ACGT | 2 cut(s) | 247, 695 |
| HpyCH4V | TGCA | 6 cut(s) | 193, 313, 329, 485, 752, 881 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 335, 340 |
| HpyF3I | CTNAG | 5 cut(s) | 183, 226, 279, 339, 432 |
| HpySE526I | ACGT | 2 cut(s) | 247, 695 |
| Hsp92I | GRCGYC | 1 cut(s) | 447 |
| Hsp92II | CATG | 1 cut(s) | 313 |
| HspAI | GCGC | 2 cut(s) | 447, 505 |
| KasI | GGCGCC | 1 cut(s) | 446 |
| KroI | GCCGGC | 1 cut(s) | 586 |
| KroNI | GCCGGC | 1 cut(s) | 588 |
| KspI | CCGCGG | 1 cut(s) | 851 |
| Kzo9I | GATC | 2 cut(s) | 706, 783 |
| LmnI | GCTCC | 2 cut(s) | 679, 832 |
| Lsp1109I | GCAGC | 3 cut(s) | 18, 205, 764 |
| LweI | GCATC | 2 cut(s) | 180, 223 |
| MaeII | ACGT | 2 cut(s) | 247, 695 |
| MaeIII | GTNAC | 8 cut(s) | 124, 221, 305, 625, 647, 832, 866, 908 |
| MalI | GATC | 2 cut(s) | 708, 785 |
| MbiI | CCGCTC | 2 cut(s) | 645, 721 |
| MboI | GATC | 2 cut(s) | 706, 783 |
| MboII | GAAGA | 2 cut(s) | 39, 685 |
| MfeI | CAATTG | 1 cut(s) | 412 |
| MhlI | GDGCHC | 1 cut(s) | 829 |
| MluCI | AATT | 4 cut(s) | 114, 412, 558, 664 |
| Mly113I | GGCGCC | 1 cut(s) | 447 |
| MlyI | GAGTC | 3 cut(s) | 218, 365, 847 |
| MmeI | TCCRAC | 3 cut(s) | 54, 329, 881 |
| Mph1103I | ATGCAT | 1 cut(s) | 315 |
| MroNI | GCCGGC | 1 cut(s) | 586 |
| MroXI | GAANNNNTTC | 1 cut(s) | 562 |
| MseI | TTAA | 6 cut(s) | 113, 117, 438, 621, 639, 776 |
| MslI | CAYNNNNRTG | 1 cut(s) | 615 |
| MspA1I | CMGCKG | 2 cut(s) | 755, 850 |
| MspI | CCGG | 3 cut(s) | 583, 587, 892 |
| MspR9I | CCNGG | 1 cut(s) | 238 |
| MunI | CAATTG | 1 cut(s) | 412 |
| MvaI | CCWGG | 1 cut(s) | 238 |
| MvnI | CGCG | 1 cut(s) | 850 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 335, 340 |
| NaeI | GCCGGC | 1 cut(s) | 588 |
| NarI | GGCGCC | 1 cut(s) | 447 |
| NdeII | GATC | 2 cut(s) | 706, 783 |
| NgoMIV | GCCGGC | 1 cut(s) | 586 |
| NlaIII | CATG | 1 cut(s) | 313 |
| NlaIV | GGNNCC | 2 cut(s) | 448, 526 |
| NmuCI | GTSAC | 6 cut(s) | 124, 221, 305, 832, 866, 908 |
| NsiI | ATGCAT | 1 cut(s) | 315 |
| NspI | RCATGY | 1 cut(s) | 313 |
| PacI | TTAATTAA | 1 cut(s) | 117 |
| PdiI | GCCGGC | 1 cut(s) | 588 |
| PdmI | GAANNNNTTC | 1 cut(s) | 562 |
| PfeI | GAWTC | 3 cut(s) | 358, 874, 895 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 676 |
| PkrI | GCNGC | 3 cut(s) | 33, 195, 754 |
| PleI | GAGTC | 3 cut(s) | 218, 365, 847 |
| PluTI | GGCGCC | 1 cut(s) | 450 |
| PpsI | GAGTC | 3 cut(s) | 218, 365, 847 |
| Psp6I | CCWGG | 1 cut(s) | 236 |
| PspEI | GGTNACC | 3 cut(s) | 625, 647, 866 |
| PspGI | CCWGG | 1 cut(s) | 236 |
| PspN4I | GGNNCC | 2 cut(s) | 448, 526 |
| PspPI | GGNCC | 3 cut(s) | 36, 525, 716 |
| PvuII | CAGCTG | 1 cut(s) | 755 |
| RsaI | GTAC | 4 cut(s) | 59, 384, 418, 731 |
| RsaNI | GTAC | 4 cut(s) | 58, 383, 417, 730 |
| RseI | CAYNNNNRTG | 1 cut(s) | 615 |
| SacII | CCGCGG | 1 cut(s) | 851 |
| SalI | GTCGAC | 1 cut(s) | 697 |
| SaqAI | TTAA | 6 cut(s) | 113, 117, 438, 621, 639, 776 |
| SatI | GCNGC | 3 cut(s) | 32, 194, 753 |
| Sau3AI | GATC | 2 cut(s) | 706, 783 |
| Sau96I | GGNCC | 3 cut(s) | 36, 525, 716 |
| ScaI | AGTACT | 1 cut(s) | 731 |
| SchI | GAGTC | 3 cut(s) | 218, 365, 847 |
| ScrFI | CCNGG | 1 cut(s) | 238 |
| SduI | GDGCHC | 1 cut(s) | 829 |
| SfaNI | GCATC | 2 cut(s) | 180, 223 |
| SfoI | GGCGCC | 1 cut(s) | 448 |
| Sfr303I | CCGCGG | 1 cut(s) | 851 |
| SgrBI | CCGCGG | 1 cut(s) | 851 |
| SinI | GGWCC | 2 cut(s) | 36, 716 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 615 |
| SmlI | CTYRAG | 1 cut(s) | 722 |
| SmoI | CTYRAG | 1 cut(s) | 722 |
| Sse9I | AATT | 4 cut(s) | 114, 412, 558, 664 |
| SsiI | CCGC | 6 cut(s) | 34, 645, 704, 719, 848, 850 |
| SspDI | GGCGCC | 1 cut(s) | 446 |
| SspI | AATATT | 1 cut(s) | 532 |
| StyD4I | CCNGG | 1 cut(s) | 236 |
| TaaI | ACNGT | 3 cut(s) | 387, 540, 908 |
| TaiI | ACGT | 2 cut(s) | 250, 698 |
| TaqI | TCGA | 2 cut(s) | 575, 698 |
| TasI | AATT | 4 cut(s) | 114, 412, 558, 664 |
| TatI | WGTACW | 1 cut(s) | 729 |
| TfiI | GAWTC | 3 cut(s) | 358, 874, 895 |
| Tru1I | TTAA | 6 cut(s) | 113, 117, 438, 621, 639, 776 |
| Tru9I | TTAA | 6 cut(s) | 113, 117, 438, 621, 639, 776 |
| TscAI | CASTG | 3 cut(s) | 492, 837, 844 |
| TseFI | GTSAC | 6 cut(s) | 124, 221, 305, 832, 866, 908 |
| TseI | GCWGC | 3 cut(s) | 31, 193, 752 |
| Tsp45I | GTSAC | 6 cut(s) | 124, 221, 305, 832, 866, 908 |
| TspDTI | ATGAA | 1 cut(s) | 650 |
| TspRI | CASTG | 3 cut(s) | 492, 837, 844 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 676 |
| VpaK11BI | GGWCC | 2 cut(s) | 36, 716 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 495 |
| XceI | RCATGY | 1 cut(s) | 313 |
| XmiI | GTMKAC | 1 cut(s) | 698 |
| XmnI | GAANNNNTTC | 1 cut(s) | 562 |
| ZrmI | AGTACT | 1 cut(s) | 731 |
| Zsp2I | ATGCAT | 1 cut(s) | 315 |