Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1002 |
| Acc36I | ACCTGC | 2 cut(s) | 901, 933 |
| Acc65I | GGTACC | 1 cut(s) | 550 |
| AccB1I | GGYRCC | 2 cut(s) | 550, 740 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 509 |
| AccBSI | CCGCTC | 2 cut(s) | 714, 1000 |
| AccIII | TCCGGA | 1 cut(s) | 664 |
| AciI | CCGC | 6 cut(s) | 369, 396, 714, 826, 998, 1025 |
| AclWI | GGATC | 2 cut(s) | 475, 488 |
| AcoI | YGGCCR | 1 cut(s) | 135 |
| AcsI | RAATTY | 3 cut(s) | 179, 758, 805 |
| AcyI | GRCGYC | 1 cut(s) | 197 |
| AdeI | CACNNNGTG | 1 cut(s) | 509 |
| AfaI | GTAC | 7 cut(s) | 77, 258, 470, 529, 552, 584, 645 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 21, 22, 425, 509, 974 |
| AgsI | TTSAA | 4 cut(s) | 101, 728, 764, 1048 |
| AjnI | CCWGG | 1 cut(s) | 821 |
| AluBI | AGCT | 1 cut(s) | 960 |
| AluI | AGCT | 1 cut(s) | 960 |
| Alw21I | GWGCWC | 1 cut(s) | 962 |
| Alw26I | GTCTC | 3 cut(s) | 188, 288, 972 |
| AlwI | GGATC | 2 cut(s) | 475, 488 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 753, 788 |
| Aor13HI | TCCGGA | 1 cut(s) | 664 |
| ApeKI | GCWGC | 3 cut(s) | 264, 440, 879 |
| ApoI | RAATTY | 3 cut(s) | 179, 758, 805 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 750, 782 |
| Asp718I | GGTACC | 1 cut(s) | 550 |
| AspS9I | GGNCC | 6 cut(s) | 382, 393, 401, 409, 428, 433 |
| AsuC2I | CCSGG | 2 cut(s) | 404, 431 |
| AxyI | CCTNAGG | 1 cut(s) | 305 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BalI | TGGCCA | 1 cut(s) | 137 |
| BamHI | GGATCC | 1 cut(s) | 480 |
| BanI | GGYRCC | 2 cut(s) | 550, 740 |
| BanII | GRGCYC | 1 cut(s) | 962 |
| BauI | CACGAG | 1 cut(s) | 702 |
| Bbv12I | GWGCWC | 1 cut(s) | 962 |
| BbvCI | CCTCAGC | 1 cut(s) | 812 |
| BbvI | GCAGC | 3 cut(s) | 276, 427, 891 |
| BccI | CCATC | 8 cut(s) | 14, 381, 470, 563, 785, 862, 977, 1025 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 98, 132 |
| BciT130I | CCWGG | 1 cut(s) | 823 |
| BciVI | GTATCC | 1 cut(s) | 568 |
| BcnI | CCSGG | 2 cut(s) | 404, 431 |
| BcoDI | GTCTC | 3 cut(s) | 188, 288, 972 |
| BfaI | CTAG | 6 cut(s) | 81, 159, 246, 347, 542, 1054 |
| BfmI | CTRYAG | 3 cut(s) | 940, 951, 991 |
| BfuAI | ACCTGC | 2 cut(s) | 901, 933 |
| BfuI | GTATCC | 1 cut(s) | 568 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 408 |
| BisI | GCNGC | 4 cut(s) | 265, 441, 827, 880 |
| BlsI | GCNGC | 4 cut(s) | 266, 442, 828, 881 |
| Bme1390I | CCNGG | 3 cut(s) | 404, 431, 823 |
| BmgT120I | GGNCC | 6 cut(s) | 382, 393, 401, 409, 428, 433 |
| BmiI | GGNNCC | 3 cut(s) | 482, 552, 742 |
| BmrFI | CCNGG | 3 cut(s) | 404, 431, 823 |
| BpmI | CTGGAG | 1 cut(s) | 996 |
| Bpu10I | CCTNAGC | 1 cut(s) | 812 |
| BpuMI | CCSGG | 2 cut(s) | 404, 431 |
| BsaHI | GRCGYC | 1 cut(s) | 197 |
| BsaWI | WCCGGW | 1 cut(s) | 664 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 23, 53, 703, 733 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 21, 22, 425, 509, 974 |
| Bse118I | RCCGGY | 2 cut(s) | 398, 743 |
| Bse21I | CCTNAGG | 1 cut(s) | 305 |
| BseAI | TCCGGA | 1 cut(s) | 664 |
| BseBI | CCWGG | 1 cut(s) | 823 |
| BseGI | GGATG | 2 cut(s) | 803, 1017 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 21, 22, 425, 509, 974 |
| BseMII | CTCAG | 2 cut(s) | 319, 803 |
| BseRI | GAGGAG | 3 cut(s) | 41, 44, 910 |
| BseXI | GCAGC | 3 cut(s) | 276, 427, 891 |
| BseYI | CCCAGC | 1 cut(s) | 260 |
| BshNI | GGYRCC | 2 cut(s) | 550, 740 |
| BsiHKAI | GWGCWC | 1 cut(s) | 962 |
| BsiSI | CCGG | 6 cut(s) | 399, 404, 431, 665, 744, 854 |
| BslFI | GGGAC | 3 cut(s) | 227, 290, 799 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 21, 22, 425, 509, 974 |
| BsmAI | GTCTC | 3 cut(s) | 188, 288, 972 |
| BsmBI | CGTCTC | 1 cut(s) | 188 |
| BsmFI | GGGAC | 3 cut(s) | 227, 290, 799 |
| BsmI | GAATGC | 1 cut(s) | 860 |
| Bsp1286I | GDGCHC | 1 cut(s) | 962 |
| Bsp13I | TCCGGA | 1 cut(s) | 664 |
| Bsp143I | GATC | 2 cut(s) | 373, 480 |
| BspACI | CCGC | 6 cut(s) | 369, 396, 714, 826, 998, 1025 |
| BspCNI | CTCAG | 2 cut(s) | 318, 804 |
| BspEI | TCCGGA | 1 cut(s) | 664 |
| BspLI | GGNNCC | 3 cut(s) | 482, 552, 742 |
| BspMAI | CTGCAG | 2 cut(s) | 944, 995 |
| BspMI | ACCTGC | 2 cut(s) | 901, 933 |
| BspPI | GGATC | 2 cut(s) | 475, 488 |
| BspT107I | GGYRCC | 2 cut(s) | 550, 740 |
| BsrBI | CCGCTC | 2 cut(s) | 714, 1000 |
| BsrFI | RCCGGY | 2 cut(s) | 398, 743 |
| BssAI | RCCGGY | 2 cut(s) | 398, 743 |
| BssMI | GATC | 2 cut(s) | 373, 480 |
| BssNI | GRCGYC | 1 cut(s) | 197 |
| BssSI | CACGAG | 1 cut(s) | 702 |
| Bst2BI | CACGAG | 1 cut(s) | 702 |
| Bst2UI | CCWGG | 1 cut(s) | 823 |
| Bst4CI | ACNGT | 3 cut(s) | 532, 692, 834 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstACI | GRCGYC | 1 cut(s) | 197 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 155, 753 |
| BstC8I | GCNNGC | 6 cut(s) | 396, 400, 420, 745, 840, 958 |
| BstDEI | CTNAG | 3 cut(s) | 305, 609, 812 |
| BstEII | GGTNACC | 1 cut(s) | 498 |
| BstF5I | GGATG | 2 cut(s) | 803, 1017 |
| BstKTI | GATC | 2 cut(s) | 376, 483 |
| BstMAI | GTCTC | 3 cut(s) | 188, 288, 972 |
| BstMBI | GATC | 2 cut(s) | 373, 480 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 155, 408, 440, 605, 753, 823, 835 |
| BstNI | CCWGG | 1 cut(s) | 823 |
| BstNSI | RCATGY | 1 cut(s) | 113 |
| BstPI | GGTNACC | 1 cut(s) | 498 |
| BstSCI | CCNGG | 3 cut(s) | 402, 429, 821 |
| BstSFI | CTRYAG | 3 cut(s) | 940, 951, 991 |
| BstV1I | GCAGC | 3 cut(s) | 276, 427, 891 |
| BstX2I | RGATCY | 1 cut(s) | 480 |
| BstYI | RGATCY | 1 cut(s) | 480 |
| Bsu36I | CCTNAGG | 1 cut(s) | 305 |
| BsuI | GTATCC | 1 cut(s) | 568 |
| BtgZI | GCGATG | 1 cut(s) | 955 |
| BtsCI | GGATG | 2 cut(s) | 803, 1017 |
| BveI | ACCTGC | 2 cut(s) | 901, 933 |
| Cac8I | GCNNGC | 6 cut(s) | 396, 400, 420, 745, 840, 958 |
| CaiI | CAGNNNCTG | 2 cut(s) | 753, 788 |
| Cfr10I | RCCGGY | 2 cut(s) | 398, 743 |
| Cfr13I | GGNCC | 6 cut(s) | 382, 393, 401, 409, 428, 433 |
| CseI | GACGC | 1 cut(s) | 205 |
| Csp6I | GTAC | 7 cut(s) | 76, 257, 469, 528, 551, 583, 644 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 114, 149 |
| CviAII | CATG | 3 cut(s) | 110, 485, 697 |
| CviQI | GTAC | 7 cut(s) | 76, 257, 469, 528, 551, 583, 644 |
| DdeI | CTNAG | 3 cut(s) | 305, 609, 812 |
| DpnI | GATC | 2 cut(s) | 375, 482 |
| DpnII | GATC | 2 cut(s) | 373, 480 |
| DraIII | CACNNNGTG | 1 cut(s) | 509 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1002 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1002 |
| EaeI | YGGCCR | 1 cut(s) | 135 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| EciI | GGCGGA | 1 cut(s) | 1014 |
| Ecl136II | GAGCTC | 1 cut(s) | 960 |
| Eco147I | AGGCCT | 1 cut(s) | 359 |
| Eco24I | GRGCYC | 1 cut(s) | 962 |
| Eco53kI | GAGCTC | 1 cut(s) | 960 |
| Eco81I | CCTNAGG | 1 cut(s) | 305 |
| Eco91I | GGTNACC | 1 cut(s) | 498 |
| EcoICRI | GAGCTC | 1 cut(s) | 960 |
| EcoO65I | GGTNACC | 1 cut(s) | 498 |
| EcoRII | CCWGG | 1 cut(s) | 821 |
| EcoT38I | GRGCYC | 1 cut(s) | 962 |
| Esp3I | CGTCTC | 1 cut(s) | 188 |
| FaeI | CATG | 3 cut(s) | 113, 488, 700 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 3 cut(s) | 227, 290, 799 |
| FatI | CATG | 3 cut(s) | 109, 484, 696 |
| FauI | CCCGC | 1 cut(s) | 403 |
| Fnu4HI | GCNGC | 4 cut(s) | 265, 441, 827, 880 |
| FokI | GGATG | 2 cut(s) | 810, 1004 |
| FriOI | GRGCYC | 1 cut(s) | 962 |
| Fsp4HI | GCNGC | 4 cut(s) | 265, 441, 827, 880 |
| FspBI | CTAG | 6 cut(s) | 81, 159, 246, 347, 542, 1054 |
| GluI | GCNGC | 4 cut(s) | 265, 441, 827, 880 |
| GsaI | CCCAGC | 1 cut(s) | 264 |
| GsuI | CTGGAG | 1 cut(s) | 996 |
| HapII | CCGG | 6 cut(s) | 399, 404, 431, 665, 744, 854 |
| HgaI | GACGC | 1 cut(s) | 205 |
| Hin1I | GRCGYC | 1 cut(s) | 197 |
| Hin1II | CATG | 3 cut(s) | 113, 488, 700 |
| HinfI | GANTC | 4 cut(s) | 285, 668, 980, 1009 |
| HpaII | CCGG | 6 cut(s) | 399, 404, 431, 665, 744, 854 |
| Hpy166II | GTNNAC | 2 cut(s) | 469, 707 |
| Hpy188I | TCNGA | 2 cut(s) | 894, 1008 |
| Hpy188III | TCNNGA | 4 cut(s) | 119, 212, 665, 865 |
| Hpy8I | GTNNAC | 2 cut(s) | 469, 707 |
| Hpy99I | CGWCG | 1 cut(s) | 834 |
| HpyAV | CCTTC | 2 cut(s) | 349, 1031 |
| HpyCH4III | ACNGT | 3 cut(s) | 532, 692, 834 |
| HpyCH4IV | ACGT | 1 cut(s) | 216 |
| HpyCH4V | TGCA | 7 cut(s) | 443, 756, 782, 842, 910, 942, 993 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 155, 408, 440, 605, 753, 823, 835 |
| HpyF3I | CTNAG | 3 cut(s) | 305, 609, 812 |
| HpySE526I | ACGT | 1 cut(s) | 216 |
| Hsp92I | GRCGYC | 1 cut(s) | 197 |
| Hsp92II | CATG | 3 cut(s) | 113, 488, 700 |
| Kpn2I | TCCGGA | 1 cut(s) | 664 |
| KpnI | GGTACC | 1 cut(s) | 554 |
| KroI | GCCGGC | 2 cut(s) | 398, 743 |
| KroNI | GCCGGC | 2 cut(s) | 400, 745 |
| Kzo9I | GATC | 2 cut(s) | 373, 480 |
| LmnI | GCTCC | 4 cut(s) | 711, 965, 1005, 1045 |
| Lsp1109I | GCAGC | 3 cut(s) | 276, 427, 891 |
| MaeI | CTAG | 6 cut(s) | 81, 159, 246, 347, 542, 1054 |
| MaeII | ACGT | 1 cut(s) | 216 |
| MaeIII | GTNAC | 2 cut(s) | 498, 749 |
| MalI | GATC | 2 cut(s) | 375, 482 |
| MbiI | CCGCTC | 2 cut(s) | 714, 1000 |
| MboI | GATC | 2 cut(s) | 373, 480 |
| MboII | GAAGA | 2 cut(s) | 203, 364 |
| MfeI | CAATTG | 1 cut(s) | 723 |
| MflI | RGATCY | 1 cut(s) | 480 |
| MhlI | GDGCHC | 1 cut(s) | 962 |
| MlsI | TGGCCA | 1 cut(s) | 137 |
| MluCI | AATT | 6 cut(s) | 179, 619, 673, 723, 758, 805 |
| MluNI | TGGCCA | 1 cut(s) | 137 |
| MlyI | GAGTC | 2 cut(s) | 974, 1003 |
| MmeI | TCCRAC | 4 cut(s) | 143, 872, 987, 1031 |
| Mox20I | TGGCCA | 1 cut(s) | 137 |
| MroI | TCCGGA | 1 cut(s) | 664 |
| MroNI | GCCGGC | 2 cut(s) | 398, 743 |
| MscI | TGGCCA | 1 cut(s) | 137 |
| MseI | TTAA | 4 cut(s) | 90, 365, 594, 777 |
| Msp20I | TGGCCA | 1 cut(s) | 137 |
| MspI | CCGG | 6 cut(s) | 399, 404, 431, 665, 744, 854 |
| MspR9I | CCNGG | 3 cut(s) | 404, 431, 823 |
| MunI | CAATTG | 1 cut(s) | 723 |
| Mva1269I | GAATGC | 1 cut(s) | 860 |
| MvaI | CCWGG | 1 cut(s) | 823 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 155, 408, 440, 605, 753, 823, 835 |
| NaeI | GCCGGC | 2 cut(s) | 400, 745 |
| NciI | CCSGG | 2 cut(s) | 404, 431 |
| NdeII | GATC | 2 cut(s) | 373, 480 |
| NgoMIV | GCCGGC | 2 cut(s) | 398, 743 |
| NlaIII | CATG | 3 cut(s) | 113, 488, 700 |
| NlaIV | GGNNCC | 3 cut(s) | 482, 552, 742 |
| NspI | RCATGY | 1 cut(s) | 113 |
| PceI | AGGCCT | 1 cut(s) | 359 |
| PctI | GAATGC | 1 cut(s) | 860 |
| PdiI | GCCGGC | 2 cut(s) | 400, 745 |
| PfeI | GAWTC | 2 cut(s) | 285, 668 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 509 |
| PkrI | GCNGC | 4 cut(s) | 266, 442, 828, 881 |
| PleI | GAGTC | 2 cut(s) | 974, 1003 |
| PpsI | GAGTC | 2 cut(s) | 974, 1003 |
| Psp124BI | GAGCTC | 1 cut(s) | 962 |
| Psp6I | CCWGG | 1 cut(s) | 821 |
| PspEI | GGTNACC | 1 cut(s) | 498 |
| PspFI | CCCAGC | 1 cut(s) | 260 |
| PspGI | CCWGG | 1 cut(s) | 821 |
| PspN4I | GGNNCC | 3 cut(s) | 482, 552, 742 |
| PspPI | GGNCC | 6 cut(s) | 382, 393, 401, 409, 428, 433 |
| PstI | CTGCAG | 2 cut(s) | 944, 995 |
| PstNI | CAGNNNCTG | 2 cut(s) | 753, 788 |
| PsuI | RGATCY | 1 cut(s) | 480 |
| RsaI | GTAC | 7 cut(s) | 77, 258, 470, 529, 552, 584, 645 |
| RsaNI | GTAC | 7 cut(s) | 76, 257, 469, 528, 551, 583, 644 |
| SacI | GAGCTC | 1 cut(s) | 962 |
| SaqAI | TTAA | 4 cut(s) | 90, 365, 594, 777 |
| SatI | GCNGC | 4 cut(s) | 265, 441, 827, 880 |
| Sau3AI | GATC | 2 cut(s) | 373, 480 |
| Sau96I | GGNCC | 6 cut(s) | 382, 393, 401, 409, 428, 433 |
| SchI | GAGTC | 2 cut(s) | 974, 1003 |
| ScrFI | CCNGG | 3 cut(s) | 404, 431, 823 |
| SduI | GDGCHC | 1 cut(s) | 962 |
| SfcI | CTRYAG | 3 cut(s) | 940, 951, 991 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 408 |
| Sse9I | AATT | 6 cut(s) | 179, 619, 673, 723, 758, 805 |
| SseBI | AGGCCT | 1 cut(s) | 359 |
| SsiI | CCGC | 6 cut(s) | 369, 396, 714, 826, 998, 1025 |
| SspMI | CTAG | 6 cut(s) | 81, 159, 246, 347, 542, 1054 |
| SstI | GAGCTC | 1 cut(s) | 962 |
| StuI | AGGCCT | 1 cut(s) | 359 |
| StyD4I | CCNGG | 3 cut(s) | 402, 429, 821 |
| TaaI | ACNGT | 3 cut(s) | 532, 692, 834 |
| TaiI | ACGT | 1 cut(s) | 219 |
| TaqI | TCGA | 2 cut(s) | 886, 929 |
| TasI | AATT | 6 cut(s) | 179, 619, 673, 723, 758, 805 |
| TatI | WGTACW | 3 cut(s) | 468, 527, 582 |
| TauI | GCSGC | 1 cut(s) | 829 |
| TfiI | GAWTC | 2 cut(s) | 285, 668 |
| Tru1I | TTAA | 4 cut(s) | 90, 365, 594, 777 |
| Tru9I | TTAA | 4 cut(s) | 90, 365, 594, 777 |
| TseI | GCWGC | 3 cut(s) | 264, 440, 879 |
| TspDTI | ATGAA | 3 cut(s) | 192, 501, 685 |
| TspGWI | ACGGA | 3 cut(s) | 724, 992, 1032 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 509 |
| XapI | RAATTY | 3 cut(s) | 179, 758, 805 |
| XceI | RCATGY | 1 cut(s) | 113 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 491, 729 |
| XspI | CTAG | 6 cut(s) | 81, 159, 246, 347, 542, 1054 |