Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 18 - 98 | 9.8e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 166 |
| AclWI | GGATC | 1 cut(s) | 88 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AfaI | GTAC | 1 cut(s) | 376 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 166, 238, 414 |
| AflIII | ACRYGT | 1 cut(s) | 105 |
| AgsI | TTSAA | 1 cut(s) | 42 |
| AjnI | CCWGG | 1 cut(s) | 6 |
| AluBI | AGCT | 2 cut(s) | 14, 47 |
| AluI | AGCT | 2 cut(s) | 14, 47 |
| Alw26I | GTCTC | 1 cut(s) | 326 |
| AlwI | GGATC | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 1 cut(s) | 384 |
| ApeKI | GCWGC | 2 cut(s) | 11, 272 |
| AspLEI | GCGC | 2 cut(s) | 6, 289 |
| AsuHPI | GGTGA | 1 cut(s) | 221 |
| AvaI | CYCGRG | 1 cut(s) | 384 |
| BbvI | GCAGC | 2 cut(s) | 23, 284 |
| BccI | CCATC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 1 cut(s) | 8 |
| BcoDI | GTCTC | 1 cut(s) | 326 |
| BfaI | CTAG | 1 cut(s) | 297 |
| BglII | AGATCT | 1 cut(s) | 176 |
| BisI | GCNGC | 2 cut(s) | 12, 273 |
| BlsI | GCNGC | 2 cut(s) | 13, 274 |
| Bme1390I | CCNGG | 1 cut(s) | 8 |
| BmeT110I | CYCGRG | 1 cut(s) | 384 |
| BmrFI | CCNGG | 1 cut(s) | 8 |
| BmsI | GCATC | 2 cut(s) | 49, 370 |
| Bsa29I | ATCGAT | 1 cut(s) | 198 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 166, 238, 414 |
| BseBI | CCWGG | 1 cut(s) | 8 |
| BseCI | ATCGAT | 1 cut(s) | 198 |
| BseGI | GGATG | 2 cut(s) | 64, 358 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 166, 238, 414 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseRI | GAGGAG | 1 cut(s) | 344 |
| BseXI | GCAGC | 2 cut(s) | 23, 284 |
| BsgI | GTGCAG | 1 cut(s) | 291 |
| BshVI | ATCGAT | 1 cut(s) | 198 |
| BsiHKCI | CYCGRG | 1 cut(s) | 384 |
| BslFI | GGGAC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 166, 238, 414 |
| BsmAI | GTCTC | 1 cut(s) | 326 |
| BsmFI | GGGAC | 1 cut(s) | 388 |
| BsoBI | CYCGRG | 1 cut(s) | 384 |
| Bsp143I | GATC | 2 cut(s) | 93, 176 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspDI | ATCGAT | 1 cut(s) | 198 |
| BspPI | GGATC | 1 cut(s) | 88 |
| BssMI | GATC | 2 cut(s) | 93, 176 |
| Bst2UI | CCWGG | 1 cut(s) | 8 |
| Bst6I | CTCTTC | 1 cut(s) | 407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 269 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 412 |
| BstF5I | GGATG | 2 cut(s) | 64, 358 |
| BstHHI | GCGC | 2 cut(s) | 6, 289 |
| BstKTI | GATC | 2 cut(s) | 96, 179 |
| BstMAI | GTCTC | 1 cut(s) | 326 |
| BstMBI | GATC | 2 cut(s) | 93, 176 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 17, 44, 74, 269, 293 |
| BstNI | CCWGG | 1 cut(s) | 8 |
| BstNSI | RCATGY | 3 cut(s) | 38, 72, 109 |
| BstSCI | CCNGG | 1 cut(s) | 6 |
| BstV1I | GCAGC | 2 cut(s) | 23, 284 |
| BstX2I | RGATCY | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 176 |
| Bsu15I | ATCGAT | 1 cut(s) | 198 |
| BsuTUI | ATCGAT | 1 cut(s) | 198 |
| BtsCI | GGATG | 2 cut(s) | 64, 358 |
| CfoI | GCGC | 2 cut(s) | 6, 289 |
| ClaI | ATCGAT | 1 cut(s) | 198 |
| Csp6I | GTAC | 1 cut(s) | 375 |
| CviAII | CATG | 4 cut(s) | 35, 55, 69, 106 |
| CviJI | RGCY | 6 cut(s) | 14, 20, 47, 77, 275, 453 |
| CviKI_1 | RGCY | 6 cut(s) | 14, 20, 47, 77, 275, 453 |
| CviQI | GTAC | 1 cut(s) | 375 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 2 cut(s) | 95, 178 |
| DpnII | GATC | 2 cut(s) | 93, 176 |
| Eam1104I | CTCTTC | 1 cut(s) | 407 |
| EarI | CTCTTC | 1 cut(s) | 407 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| Eco88I | CYCGRG | 1 cut(s) | 384 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 412 |
| EcoRII | CCWGG | 1 cut(s) | 6 |
| FaeI | CATG | 4 cut(s) | 38, 58, 72, 109 |
| FaqI | GGGAC | 1 cut(s) | 388 |
| FatI | CATG | 4 cut(s) | 34, 54, 68, 105 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 273 |
| FokI | GGATG | 2 cut(s) | 71, 365 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 273 |
| FspBI | CTAG | 1 cut(s) | 297 |
| GlaI | GCGC | 2 cut(s) | 5, 288 |
| GluI | GCNGC | 2 cut(s) | 12, 273 |
| HhaI | GCGC | 2 cut(s) | 6, 289 |
| Hin1II | CATG | 4 cut(s) | 38, 58, 72, 109 |
| Hin6I | GCGC | 2 cut(s) | 4, 287 |
| HinP1I | GCGC | 2 cut(s) | 4, 287 |
| HinfI | GANTC | 2 cut(s) | 334, 368 |
| HphI | GGTGA | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 1 cut(s) | 181 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 350 |
| HpyCH4IV | ACGT | 1 cut(s) | 165 |
| HpyCH4V | TGCA | 1 cut(s) | 272 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 17, 44, 74, 269, 293 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 1 cut(s) | 165 |
| Hsp92II | CATG | 4 cut(s) | 38, 58, 72, 109 |
| HspAI | GCGC | 2 cut(s) | 4, 287 |
| Kzo9I | GATC | 2 cut(s) | 93, 176 |
| LpnPI | CCDG | 5 cut(s) | 20, 63, 86, 224, 428 |
| Lsp1109I | GCAGC | 2 cut(s) | 23, 284 |
| LweI | GCATC | 2 cut(s) | 49, 370 |
| MaeI | CTAG | 1 cut(s) | 297 |
| MaeII | ACGT | 1 cut(s) | 165 |
| MalI | GATC | 2 cut(s) | 95, 178 |
| MboI | GATC | 2 cut(s) | 93, 176 |
| MboII | GAAGA | 3 cut(s) | 182, 244, 424 |
| MflI | RGATCY | 1 cut(s) | 176 |
| MluCI | AATT | 1 cut(s) | 304 |
| MlyI | GAGTC | 2 cut(s) | 328, 362 |
| MnlI | CCTC | 4 cut(s) | 322, 380, 408, 418 |
| MslI | CAYNNNNRTG | 1 cut(s) | 57 |
| MspR9I | CCNGG | 1 cut(s) | 8 |
| MvaI | CCWGG | 1 cut(s) | 8 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 17, 44, 74, 269, 293 |
| NdeII | GATC | 2 cut(s) | 93, 176 |
| NlaIII | CATG | 4 cut(s) | 38, 58, 72, 109 |
| NspI | RCATGY | 3 cut(s) | 38, 72, 109 |
| PaeR7I | CTCGAG | 1 cut(s) | 384 |
| PciI | ACATGT | 1 cut(s) | 105 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 166 |
| PkrI | GCNGC | 2 cut(s) | 13, 274 |
| PleI | GAGTC | 2 cut(s) | 328, 362 |
| PpsI | GAGTC | 2 cut(s) | 328, 362 |
| PscI | ACATGT | 1 cut(s) | 105 |
| Psp6I | CCWGG | 1 cut(s) | 6 |
| PspGI | CCWGG | 1 cut(s) | 6 |
| PspXI | VCTCGAGB | 1 cut(s) | 384 |
| PsuI | RGATCY | 1 cut(s) | 176 |
| RsaI | GTAC | 1 cut(s) | 376 |
| RsaNI | GTAC | 1 cut(s) | 375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 57 |
| SatI | GCNGC | 2 cut(s) | 12, 273 |
| Sau3AI | GATC | 2 cut(s) | 93, 176 |
| SchI | GAGTC | 2 cut(s) | 328, 362 |
| ScrFI | CCNGG | 1 cut(s) | 8 |
| SetI | ASST | 8 cut(s) | 16, 49, 168, 243, 294, 391, 397, 419 |
| SfaNI | GCATC | 2 cut(s) | 49, 370 |
| Sfr274I | CTCGAG | 1 cut(s) | 384 |
| SlaI | CTCGAG | 1 cut(s) | 384 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 384 |
| SmoI | CTYRAG | 1 cut(s) | 384 |
| Sse9I | AATT | 1 cut(s) | 304 |
| SspMI | CTAG | 1 cut(s) | 297 |
| StyD4I | CCNGG | 1 cut(s) | 6 |
| TaiI | ACGT | 1 cut(s) | 168 |
| TaqI | TCGA | 3 cut(s) | 198, 385, 410 |
| TasI | AATT | 1 cut(s) | 304 |
| TatI | WGTACW | 1 cut(s) | 374 |
| TseI | GCWGC | 2 cut(s) | 11, 272 |
| TspDTI | ATGAA | 1 cut(s) | 413 |
| TspGWI | ACGGA | 1 cut(s) | 245 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 166 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 412 |
| XceI | RCATGY | 3 cut(s) | 38, 72, 109 |
| XhoI | CTCGAG | 1 cut(s) | 384 |
| XspI | CTAG | 1 cut(s) | 297 |