ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 913 |
| AccB1I | GGYRCC | 1 cut(s) | 1001 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcsI | RAATTY | 5 cut(s) | 169, 440, 836, 857, 1085 |
| AfaI | GTAC | 4 cut(s) | 27, 74, 585, 658 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 163, 914 |
| AgsI | TTSAA | 2 cut(s) | 163, 996 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 776, 808 |
| AluBI | AGCT | 6 cut(s) | 269, 308, 402, 605, 818, 1013 |
| AluI | AGCT | 6 cut(s) | 269, 308, 402, 605, 818, 1013 |
| AlwI | GGATC | 1 cut(s) | 233 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 869 |
| AoxI | GGCC | 1 cut(s) | 248 |
| ApeKI | GCWGC | 1 cut(s) | 305 |
| ApoI | RAATTY | 5 cut(s) | 169, 440, 836, 857, 1085 |
| AseI | ATTAAT | 1 cut(s) | 930 |
| AspLEI | GCGC | 1 cut(s) | 914 |
| AsuC2I | CCSGG | 1 cut(s) | 130 |
| AsuHPI | GGTGA | 2 cut(s) | 449, 580 |
| AsuII | TTCGAA | 1 cut(s) | 337 |
| BanI | GGYRCC | 1 cut(s) | 1001 |
| BauI | CACGAG | 1 cut(s) | 768 |
| BbsI | GAAGAC | 1 cut(s) | 78 |
| BbvI | GCAGC | 1 cut(s) | 317 |
| BccI | CCATC | 2 cut(s) | 595, 932 |
| BceAI | ACGGC | 1 cut(s) | 471 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 821, 855 |
| BcnI | CCSGG | 1 cut(s) | 130 |
| BfaI | CTAG | 5 cut(s) | 5, 150, 351, 876, 960 |
| BisI | GCNGC | 1 cut(s) | 306 |
| BlsI | GCNGC | 1 cut(s) | 307 |
| BmcAI | AGTACT | 1 cut(s) | 74 |
| Bme1390I | CCNGG | 1 cut(s) | 130 |
| BmiI | GGNNCC | 5 cut(s) | 102, 155, 906, 943, 1003 |
| BmrFI | CCNGG | 1 cut(s) | 130 |
| BpiI | GAAGAC | 1 cut(s) | 78 |
| BpmI | CTGGAG | 2 cut(s) | 987, 1035 |
| Bpu14I | TTCGAA | 1 cut(s) | 337 |
| BpuEI | CTTGAG | 1 cut(s) | 615 |
| BpuMI | CCSGG | 1 cut(s) | 130 |
| Bsa29I | ATCGAT | 1 cut(s) | 409 |
| BsaAI | YACGTR | 2 cut(s) | 827, 1034 |
| BsaJI | CCNNGG | 1 cut(s) | 251 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 556, 586 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 163, 914 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseCI | ATCGAT | 1 cut(s) | 409 |
| BseDI | CCNNGG | 1 cut(s) | 251 |
| BseGI | GGATG | 1 cut(s) | 641 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 163, 914 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseRI | GAGGAG | 2 cut(s) | 212, 371 |
| BseXI | GCAGC | 1 cut(s) | 317 |
| BshFI | GGCC | 1 cut(s) | 250 |
| BshNI | GGYRCC | 1 cut(s) | 1001 |
| BshVI | ATCGAT | 1 cut(s) | 409 |
| BsiSI | CCGG | 1 cut(s) | 130 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 163, 914 |
| BsmI | GAATGC | 2 cut(s) | 793, 1084 |
| BsnI | GGCC | 1 cut(s) | 250 |
| Bsp119I | TTCGAA | 1 cut(s) | 337 |
| Bsp143I | GATC | 2 cut(s) | 225, 406 |
| BspANI | GGCC | 1 cut(s) | 250 |
| BspDI | ATCGAT | 1 cut(s) | 409 |
| BspHI | TCATGA | 1 cut(s) | 574 |
| BspLI | GGNNCC | 5 cut(s) | 102, 155, 906, 943, 1003 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BspT104I | TTCGAA | 1 cut(s) | 337 |
| BspT107I | GGYRCC | 1 cut(s) | 1001 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BssECI | CCNNGG | 1 cut(s) | 251 |
| BssMI | GATC | 2 cut(s) | 225, 406 |
| BssSI | CACGAG | 1 cut(s) | 768 |
| Bst2BI | CACGAG | 1 cut(s) | 768 |
| Bst4CI | ACNGT | 3 cut(s) | 511, 665, 741 |
| Bst6I | CTCTTC | 2 cut(s) | 524, 880 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1055 |
| BstBAI | YACGTR | 2 cut(s) | 827, 1034 |
| BstBI | TTCGAA | 1 cut(s) | 337 |
| BstDEI | CTNAG | 1 cut(s) | 812 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 161 |
| BstF5I | GGATG | 1 cut(s) | 641 |
| BstHHI | GCGC | 1 cut(s) | 914 |
| BstKTI | GATC | 2 cut(s) | 228, 409 |
| BstMBI | GATC | 2 cut(s) | 225, 406 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 911, 1010, 1019, 1055 |
| BstNSI | RCATGY | 1 cut(s) | 1058 |
| BstSCI | CCNGG | 1 cut(s) | 128 |
| BstV1I | GCAGC | 1 cut(s) | 317 |
| BstV2I | GAAGAC | 1 cut(s) | 78 |
| BstX2I | RGATCY | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 225 |
| Bsu15I | ATCGAT | 1 cut(s) | 409 |
| BsuRI | GGCC | 1 cut(s) | 250 |
| BsuTUI | ATCGAT | 1 cut(s) | 409 |
| BtsCI | GGATG | 1 cut(s) | 641 |
| BtsI | GCAGTG | 1 cut(s) | 870 |
| BtsIMutI | CAGTG | 2 cut(s) | 597, 870 |
| CaiI | CAGNNNCTG | 1 cut(s) | 869 |
| CciI | TCATGA | 1 cut(s) | 574 |
| CfoI | GCGC | 1 cut(s) | 914 |
| ClaI | ATCGAT | 1 cut(s) | 409 |
| CseI | GACGC | 1 cut(s) | 830 |
| Csp6I | GTAC | 4 cut(s) | 26, 73, 584, 657 |
| CviAII | CATG | 8 cut(s) | 18, 110, 575, 678, 897, 909, 1006, 1055 |
| CviQI | GTAC | 4 cut(s) | 26, 73, 584, 657 |
| DdeI | CTNAG | 1 cut(s) | 812 |
| DpnI | GATC | 2 cut(s) | 227, 408 |
| DpnII | GATC | 2 cut(s) | 225, 406 |
| Eam1104I | CTCTTC | 2 cut(s) | 524, 880 |
| EarI | CTCTTC | 2 cut(s) | 524, 880 |
| Eco32I | GATATC | 1 cut(s) | 1044 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 161 |
| EcoRI | GAATTC | 1 cut(s) | 169 |
| EcoRV | GATATC | 1 cut(s) | 1044 |
| EcoT22I | ATGCAT | 1 cut(s) | 793 |
| FaeI | CATG | 8 cut(s) | 21, 113, 578, 681, 900, 912, 1009, 1058 |
| FatI | CATG | 8 cut(s) | 17, 109, 574, 677, 896, 908, 1005, 1054 |
| FauNDI | CATATG | 1 cut(s) | 209 |
| Fnu4HI | GCNGC | 1 cut(s) | 306 |
| FokI | GGATG | 1 cut(s) | 648 |
| Fsp4HI | GCNGC | 1 cut(s) | 306 |
| FspBI | CTAG | 5 cut(s) | 5, 150, 351, 876, 960 |
| FspI | TGCGCA | 1 cut(s) | 913 |
| GlaI | GCGC | 1 cut(s) | 913 |
| GluI | GCNGC | 1 cut(s) | 306 |
| GsuI | CTGGAG | 2 cut(s) | 987, 1035 |
| HaeIII | GGCC | 1 cut(s) | 250 |
| HapII | CCGG | 1 cut(s) | 130 |
| HgaI | GACGC | 1 cut(s) | 830 |
| HhaI | GCGC | 1 cut(s) | 914 |
| Hin1II | CATG | 8 cut(s) | 21, 113, 578, 681, 900, 912, 1009, 1058 |
| Hin6I | GCGC | 1 cut(s) | 912 |
| HinP1I | GCGC | 1 cut(s) | 912 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HpaII | CCGG | 1 cut(s) | 130 |
| HphI | GGTGA | 2 cut(s) | 449, 580 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 1037 |
| Hpy188I | TCNGA | 5 cut(s) | 217, 333, 406, 492, 507 |
| Hpy188III | TCNNGA | 6 cut(s) | 80, 160, 364, 575, 768, 966 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 1037 |
| HpyAV | CCTTC | 4 cut(s) | 157, 333, 535, 644 |
| HpyCH4III | ACNGT | 3 cut(s) | 511, 665, 741 |
| HpyCH4IV | ACGT | 2 cut(s) | 826, 1033 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 911, 1010, 1019, 1055 |
| HpyF3I | CTNAG | 1 cut(s) | 812 |
| HpySE526I | ACGT | 2 cut(s) | 826, 1033 |
| Hsp92II | CATG | 8 cut(s) | 21, 113, 578, 681, 900, 912, 1009, 1058 |
| HspAI | GCGC | 1 cut(s) | 912 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 2 cut(s) | 225, 406 |
| LmnI | GCTCC | 4 cut(s) | 106, 744, 910, 947 |
| Lsp1109I | GCAGC | 1 cut(s) | 317 |
| MaeI | CTAG | 5 cut(s) | 5, 150, 351, 876, 960 |
| MaeII | ACGT | 2 cut(s) | 826, 1033 |
| MalI | GATC | 2 cut(s) | 227, 408 |
| MboI | GATC | 2 cut(s) | 225, 406 |
| MboII | GAAGA | 7 cut(s) | 78, 474, 541, 796, 891, 894, 897 |
| MfeI | CAATTG | 1 cut(s) | 1093 |
| MflI | RGATCY | 1 cut(s) | 225 |
| MluCI | AATT | 7 cut(s) | 169, 440, 836, 857, 927, 1085, 1093 |
| MlyI | GAGTC | 3 cut(s) | 92, 580, 780 |
| MmeI | TCCRAC | 3 cut(s) | 203, 405, 470 |
| Mph1103I | ATGCAT | 1 cut(s) | 793 |
| MseI | TTAA | 5 cut(s) | 204, 374, 450, 923, 930 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1032 |
| MspI | CCGG | 1 cut(s) | 130 |
| MspR9I | CCNGG | 1 cut(s) | 130 |
| MunI | CAATTG | 1 cut(s) | 1093 |
| Mva1269I | GAATGC | 2 cut(s) | 793, 1084 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 911, 1010, 1019, 1055 |
| NciI | CCSGG | 1 cut(s) | 130 |
| NdeI | CATATG | 1 cut(s) | 209 |
| NdeII | GATC | 2 cut(s) | 225, 406 |
| NlaIII | CATG | 8 cut(s) | 21, 113, 578, 681, 900, 912, 1009, 1058 |
| NlaIV | GGNNCC | 5 cut(s) | 102, 155, 906, 943, 1003 |
| NmeAIII | GCCGAG | 1 cut(s) | 276 |
| NsbI | TGCGCA | 1 cut(s) | 913 |
| NsiI | ATGCAT | 1 cut(s) | 793 |
| NspI | RCATGY | 1 cut(s) | 1058 |
| NspV | TTCGAA | 1 cut(s) | 337 |
| PagI | TCATGA | 1 cut(s) | 574 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 248 |
| PctI | GAATGC | 2 cut(s) | 793, 1084 |
| PfeI | GAWTC | 7 cut(s) | 57, 263, 334, 493, 550, 626, 992 |
| PfoI | TCCNGGA | 1 cut(s) | 128 |
| PkrI | GCNGC | 1 cut(s) | 307 |
| PleI | GAGTC | 3 cut(s) | 91, 579, 779 |
| PpsI | GAGTC | 3 cut(s) | 91, 579, 779 |
| Ppu21I | YACGTR | 2 cut(s) | 827, 1034 |
| PshBI | ATTAAT | 1 cut(s) | 930 |
| PspN4I | GGNNCC | 5 cut(s) | 102, 155, 906, 943, 1003 |
| PstNI | CAGNNNCTG | 1 cut(s) | 869 |
| PsuI | RGATCY | 1 cut(s) | 225 |
| RsaI | GTAC | 4 cut(s) | 27, 74, 585, 658 |
| RsaNI | GTAC | 4 cut(s) | 26, 73, 584, 657 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1032 |
| SaqAI | TTAA | 5 cut(s) | 204, 374, 450, 923, 930 |
| SatI | GCNGC | 1 cut(s) | 306 |
| Sau3AI | GATC | 2 cut(s) | 225, 406 |
| ScaI | AGTACT | 1 cut(s) | 74 |
| SchI | GAGTC | 3 cut(s) | 92, 580, 780 |
| ScrFI | CCNGG | 1 cut(s) | 130 |
| SfuI | TTCGAA | 1 cut(s) | 337 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1032 |
| SmlI | CTYRAG | 1 cut(s) | 630 |
| SmoI | CTYRAG | 1 cut(s) | 630 |
| Sse9I | AATT | 7 cut(s) | 169, 440, 836, 857, 927, 1085, 1093 |
| SspMI | CTAG | 5 cut(s) | 5, 150, 351, 876, 960 |
| StyD4I | CCNGG | 1 cut(s) | 128 |
| TaaI | ACNGT | 3 cut(s) | 511, 665, 741 |
| TaiI | ACGT | 2 cut(s) | 829, 1036 |
| TaqI | TCGA | 4 cut(s) | 337, 363, 409, 548 |
| TasI | AATT | 7 cut(s) | 169, 440, 836, 857, 927, 1085, 1093 |
| TatI | WGTACW | 2 cut(s) | 72, 656 |
| TfiI | GAWTC | 7 cut(s) | 57, 263, 334, 493, 550, 626, 992 |
| Tru1I | TTAA | 5 cut(s) | 204, 374, 450, 923, 930 |
| Tru9I | TTAA | 5 cut(s) | 204, 374, 450, 923, 930 |
| TscAI | CASTG | 2 cut(s) | 597, 870 |
| TseI | GCWGC | 1 cut(s) | 305 |
| TspDTI | ATGAA | 4 cut(s) | 459, 467, 836, 938 |
| TspRI | CASTG | 2 cut(s) | 597, 870 |
| VspI | ATTAAT | 1 cut(s) | 930 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 161 |
| XapI | RAATTY | 5 cut(s) | 169, 440, 836, 857, 1085 |
| XceI | RCATGY | 1 cut(s) | 1058 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 862 |
| XspI | CTAG | 5 cut(s) | 5, 150, 351, 876, 960 |
| ZrmI | AGTACT | 1 cut(s) | 74 |
| Zsp2I | ATGCAT | 1 cut(s) | 793 |