ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 2 cut(s) | 702, 1011 |
| AccII | CGCG | 1 cut(s) | 290 |
| AciI | CCGC | 3 cut(s) | 288, 1362, 1470 |
| AclWI | GGATC | 5 cut(s) | 503, 682, 695, 991, 1004 |
| AcsI | RAATTY | 3 cut(s) | 91, 159, 1463 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AcvI | CACGTG | 2 cut(s) | 790, 1168 |
| AcyI | GRCGYC | 1 cut(s) | 1333 |
| AdeI | CACNNNGTG | 2 cut(s) | 793, 1171 |
| AfaI | GTAC | 3 cut(s) | 142, 320, 429 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 375, 442, 725, 726, 856, 1034, 1035, 1234 |
| AflII | CTTAAG | 2 cut(s) | 770, 1079 |
| AflIII | ACRYGT | 2 cut(s) | 787, 1165 |
| AgsI | TTSAA | 6 cut(s) | 80, 518, 613, 1406, 1454, 1462 |
| AjiI | CACGTC | 2 cut(s) | 821, 1199 |
| AjnI | CCWGG | 1 cut(s) | 1440 |
| AluBI | AGCT | 7 cut(s) | 50, 203, 652, 732, 961, 1041, 1420 |
| AluI | AGCT | 7 cut(s) | 50, 203, 652, 732, 961, 1041, 1420 |
| Alw26I | GTCTC | 4 cut(s) | 230, 337, 560, 928 |
| AlwI | GGATC | 5 cut(s) | 503, 682, 695, 991, 1004 |
| Ama87I | CYCGRG | 7 cut(s) | 495, 683, 702, 841, 992, 1011, 1219 |
| ApoI | RAATTY | 3 cut(s) | 91, 159, 1463 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 320 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| AsuC2I | CCSGG | 5 cut(s) | 326, 597, 833, 1118, 1211 |
| AsuHPI | GGTGA | 5 cut(s) | 283, 690, 805, 999, 1183 |
| AsuII | TTCGAA | 1 cut(s) | 220 |
| AvaI | CYCGRG | 7 cut(s) | 495, 683, 702, 841, 992, 1011, 1219 |
| AvaII | GGWCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 336, 369 |
| BamHI | GGATCC | 2 cut(s) | 687, 996 |
| BbrPI | CACGTG | 2 cut(s) | 790, 1168 |
| BbsI | GAAGAC | 2 cut(s) | 176, 598 |
| BccI | CCATC | 2 cut(s) | 871, 1249 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 748, 782, 1057, 1091 |
| BciT130I | CCWGG | 1 cut(s) | 1442 |
| BciVI | GTATCC | 1 cut(s) | 337 |
| BcnI | CCSGG | 5 cut(s) | 326, 597, 833, 1118, 1211 |
| BcoDI | GTCTC | 4 cut(s) | 230, 337, 560, 928 |
| BfaI | CTAG | 2 cut(s) | 123, 1299 |
| BfrI | CTTAAG | 2 cut(s) | 770, 1079 |
| BfuI | GTATCC | 1 cut(s) | 337 |
| BglII | AGATCT | 2 cut(s) | 797, 1175 |
| BlpI | GCTNAGC | 1 cut(s) | 1421 |
| BmcAI | AGTACT | 2 cut(s) | 142, 320 |
| Bme1390I | CCNGG | 6 cut(s) | 326, 597, 833, 1118, 1211, 1442 |
| Bme18I | GGWCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| BmeT110I | CYCGRG | 7 cut(s) | 495, 683, 702, 841, 992, 1011, 1219 |
| BmgBI | CACGTC | 2 cut(s) | 821, 1199 |
| BmgT120I | GGNCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| BmiI | GGNNCC | 9 cut(s) | 689, 717, 806, 831, 848, 998, 1184, 1209, 1226 |
| BmrFI | CCNGG | 6 cut(s) | 326, 597, 833, 1118, 1211, 1442 |
| BmsI | GCATC | 3 cut(s) | 612, 669, 978 |
| BpiI | GAAGAC | 2 cut(s) | 176, 598 |
| BpmI | CTGGAG | 1 cut(s) | 1424 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1421 |
| Bpu14I | TTCGAA | 1 cut(s) | 220 |
| BpuMI | CCSGG | 5 cut(s) | 326, 597, 833, 1118, 1211 |
| Bsa29I | ATCGAT | 1 cut(s) | 532 |
| BsaAI | YACGTR | 2 cut(s) | 790, 1168 |
| BsaHI | GRCGYC | 1 cut(s) | 1333 |
| BsaI | GGTCTC | 2 cut(s) | 560, 928 |
| BsaJI | CCNNGG | 3 cut(s) | 720, 1029, 1116 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 375, 442, 725, 726, 856, 1034, 1035, 1234 |
| Bse118I | RCCGGY | 1 cut(s) | 1358 |
| Bse1I | ACTGG | 1 cut(s) | 512 |
| Bse3DI | GCAATG | 2 cut(s) | 72, 252 |
| BseBI | CCWGG | 1 cut(s) | 1442 |
| BseCI | ATCGAT | 1 cut(s) | 532 |
| BseDI | CCNNGG | 3 cut(s) | 720, 1029, 1116 |
| BseGI | GGATG | 8 cut(s) | 334, 531, 684, 784, 810, 993, 1162, 1188 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 375, 442, 725, 726, 856, 1034, 1035, 1234 |
| BseMI | GCAATG | 2 cut(s) | 72, 252 |
| BseMII | CTCAG | 1 cut(s) | 1412 |
| BseNI | ACTGG | 1 cut(s) | 512 |
| BseYI | CCCAGC | 3 cut(s) | 203, 725, 1034 |
| Bsh1236I | CGCG | 1 cut(s) | 290 |
| BshVI | ATCGAT | 1 cut(s) | 532 |
| BsiHKCI | CYCGRG | 7 cut(s) | 495, 683, 702, 841, 992, 1011, 1219 |
| BsiSI | CCGG | 6 cut(s) | 326, 596, 833, 1118, 1211, 1359 |
| BslFI | GGGAC | 7 cut(s) | 815, 832, 1090, 1099, 1193, 1210, 1316 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 375, 442, 725, 726, 856, 1034, 1035, 1234 |
| BsmAI | GTCTC | 4 cut(s) | 230, 337, 560, 928 |
| BsmFI | GGGAC | 7 cut(s) | 815, 832, 1090, 1099, 1193, 1210, 1316 |
| Bso31I | GGTCTC | 2 cut(s) | 560, 928 |
| BsoBI | CYCGRG | 7 cut(s) | 495, 683, 702, 841, 992, 1011, 1219 |
| Bsp119I | TTCGAA | 1 cut(s) | 220 |
| Bsp143I | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1421 |
| BspACI | CCGC | 3 cut(s) | 288, 1362, 1470 |
| BspCNI | CTCAG | 1 cut(s) | 1413 |
| BspDI | ATCGAT | 1 cut(s) | 532 |
| BspFNI | CGCG | 1 cut(s) | 290 |
| BspHI | TCATGA | 1 cut(s) | 355 |
| BspLI | GGNNCC | 9 cut(s) | 689, 717, 806, 831, 848, 998, 1184, 1209, 1226 |
| BspPI | GGATC | 5 cut(s) | 503, 682, 695, 991, 1004 |
| BspT104I | TTCGAA | 1 cut(s) | 220 |
| BspTI | CTTAAG | 2 cut(s) | 770, 1079 |
| BspTNI | GGTCTC | 2 cut(s) | 560, 928 |
| BsrDI | GCAATG | 2 cut(s) | 72, 252 |
| BsrFI | RCCGGY | 1 cut(s) | 1358 |
| BsrI | ACTGG | 1 cut(s) | 512 |
| BssAI | RCCGGY | 1 cut(s) | 1358 |
| BssECI | CCNNGG | 3 cut(s) | 720, 1029, 1116 |
| BssMI | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| BssNI | GRCGYC | 1 cut(s) | 1333 |
| Bst2UI | CCWGG | 1 cut(s) | 1442 |
| Bst4CI | ACNGT | 3 cut(s) | 829, 886, 1264 |
| Bst6I | CTCTTC | 1 cut(s) | 495 |
| BstACI | GRCGYC | 1 cut(s) | 1333 |
| BstAFI | CTTAAG | 2 cut(s) | 770, 1079 |
| BstBAI | YACGTR | 2 cut(s) | 790, 1168 |
| BstBI | TTCGAA | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 3 cut(s) | 120, 180, 606 |
| BstDEI | CTNAG | 3 cut(s) | 5, 627, 1421 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 854, 1232 |
| BstF5I | GGATG | 8 cut(s) | 334, 531, 684, 784, 810, 993, 1162, 1188 |
| BstFNI | CGCG | 1 cut(s) | 290 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 7 cut(s) | 441, 511, 536, 690, 800, 999, 1178 |
| BstMAI | GTCTC | 4 cut(s) | 230, 337, 560, 928 |
| BstMBI | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 251, 260, 296, 614, 738, 1047 |
| BstNI | CCWGG | 1 cut(s) | 1442 |
| BstSCI | CCNGG | 6 cut(s) | 324, 595, 831, 1116, 1209, 1440 |
| BstUI | CGCG | 1 cut(s) | 290 |
| BstV2I | GAAGAC | 2 cut(s) | 176, 598 |
| BstX2I | RGATCY | 4 cut(s) | 687, 797, 996, 1175 |
| BstYI | RGATCY | 4 cut(s) | 687, 797, 996, 1175 |
| Bsu15I | ATCGAT | 1 cut(s) | 532 |
| BsuI | GTATCC | 1 cut(s) | 337 |
| BsuTUI | ATCGAT | 1 cut(s) | 532 |
| BtrI | CACGTC | 2 cut(s) | 821, 1199 |
| BtsCI | GGATG | 8 cut(s) | 334, 531, 684, 784, 810, 993, 1162, 1188 |
| Cac8I | GCNNGC | 3 cut(s) | 120, 180, 606 |
| CciI | TCATGA | 1 cut(s) | 355 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr10I | RCCGGY | 1 cut(s) | 1358 |
| Cfr13I | GGNCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| ClaI | ATCGAT | 1 cut(s) | 532 |
| CseI | GACGC | 2 cut(s) | 33, 1322 |
| Csp6I | GTAC | 3 cut(s) | 141, 319, 428 |
| CviAII | CATG | 7 cut(s) | 264, 356, 375, 431, 862, 898, 1240 |
| CviQI | GTAC | 3 cut(s) | 141, 319, 428 |
| DdeI | CTNAG | 3 cut(s) | 5, 627, 1421 |
| DpnI | GATC | 7 cut(s) | 440, 510, 535, 689, 799, 998, 1177 |
| DpnII | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| DraIII | CACNNNGTG | 2 cut(s) | 793, 1171 |
| Eam1104I | CTCTTC | 1 cut(s) | 495 |
| EarI | CTCTTC | 1 cut(s) | 495 |
| Eco31I | GGTCTC | 2 cut(s) | 560, 928 |
| Eco32I | GATATC | 2 cut(s) | 696, 1005 |
| Eco47I | GGWCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| Eco72I | CACGTG | 2 cut(s) | 790, 1168 |
| Eco88I | CYCGRG | 7 cut(s) | 495, 683, 702, 841, 992, 1011, 1219 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 854, 1232 |
| EcoO109I | RGGNCCY | 4 cut(s) | 805, 846, 1183, 1224 |
| EcoRII | CCWGG | 1 cut(s) | 1440 |
| EcoRV | GATATC | 2 cut(s) | 696, 1005 |
| FaeI | CATG | 7 cut(s) | 267, 359, 378, 434, 865, 901, 1243 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 12, 44 |
| FaqI | GGGAC | 7 cut(s) | 815, 832, 1090, 1099, 1193, 1210, 1316 |
| FatI | CATG | 7 cut(s) | 263, 355, 374, 430, 861, 897, 1239 |
| FauI | CCCGC | 2 cut(s) | 1355, 1463 |
| FauNDI | CATATG | 1 cut(s) | 61 |
| FokI | GGATG | 8 cut(s) | 341, 538, 691, 791, 797, 1000, 1169, 1175 |
| FspBI | CTAG | 2 cut(s) | 123, 1299 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GsaI | CCCAGC | 3 cut(s) | 207, 729, 1038 |
| GsuI | CTGGAG | 1 cut(s) | 1424 |
| HapII | CCGG | 6 cut(s) | 326, 596, 833, 1118, 1211, 1359 |
| HgaI | GACGC | 2 cut(s) | 33, 1322 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1I | GRCGYC | 1 cut(s) | 1333 |
| Hin1II | CATG | 7 cut(s) | 267, 359, 378, 434, 865, 901, 1243 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HincII | GTYRAC | 1 cut(s) | 1288 |
| HindII | GTYRAC | 1 cut(s) | 1288 |
| HinfI | GANTC | 4 cut(s) | 359, 493, 760, 1069 |
| HpaII | CCGG | 6 cut(s) | 326, 596, 833, 1118, 1211, 1359 |
| HphI | GGTGA | 5 cut(s) | 283, 690, 805, 999, 1183 |
| Hpy166II | GTNNAC | 1 cut(s) | 1288 |
| Hpy188I | TCNGA | 4 cut(s) | 715, 785, 1024, 1163 |
| Hpy8I | GTNNAC | 1 cut(s) | 1288 |
| Hpy99I | CGWCG | 1 cut(s) | 1338 |
| HpyAV | CCTTC | 6 cut(s) | 375, 375, 573, 619, 941, 1478 |
| HpyCH4III | ACNGT | 3 cut(s) | 829, 886, 1264 |
| HpyCH4IV | ACGT | 5 cut(s) | 789, 820, 1167, 1198, 1305 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 65, 818, 1093, 1196 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 251, 260, 296, 614, 738, 1047 |
| HpyF3I | CTNAG | 3 cut(s) | 5, 627, 1421 |
| HpySE526I | ACGT | 5 cut(s) | 789, 820, 1167, 1198, 1305 |
| Hsp92I | GRCGYC | 1 cut(s) | 1333 |
| Hsp92II | CATG | 7 cut(s) | 267, 359, 378, 434, 865, 901, 1243 |
| HspAI | GCGC | 1 cut(s) | 290 |
| Kzo9I | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| LmnI | GCTCC | 5 cut(s) | 649, 729, 958, 1038, 1443 |
| LweI | GCATC | 3 cut(s) | 612, 669, 978 |
| MaeI | CTAG | 2 cut(s) | 123, 1299 |
| MaeII | ACGT | 5 cut(s) | 789, 820, 1167, 1198, 1305 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MalI | GATC | 7 cut(s) | 440, 510, 535, 689, 799, 998, 1177 |
| MboI | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| MboII | GAAGA | 5 cut(s) | 113, 181, 512, 603, 1466 |
| MflI | RGATCY | 4 cut(s) | 687, 797, 996, 1175 |
| MluCI | AATT | 4 cut(s) | 91, 159, 232, 1463 |
| MlyI | GAGTC | 3 cut(s) | 487, 769, 1078 |
| MmeI | TCCRAC | 5 cut(s) | 763, 848, 882, 1141, 1260 |
| MroXI | GAANNNNTTC | 1 cut(s) | 320 |
| MseI | TTAA | 3 cut(s) | 237, 771, 1080 |
| MspCI | CTTAAG | 2 cut(s) | 770, 1079 |
| MspI | CCGG | 6 cut(s) | 326, 596, 833, 1118, 1211, 1359 |
| MspR9I | CCNGG | 6 cut(s) | 326, 597, 833, 1118, 1211, 1442 |
| MvaI | CCWGG | 1 cut(s) | 1442 |
| MvnI | CGCG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 251, 260, 296, 614, 738, 1047 |
| NciI | CCSGG | 5 cut(s) | 326, 597, 833, 1118, 1211 |
| NdeI | CATATG | 1 cut(s) | 61 |
| NdeII | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| NlaIII | CATG | 7 cut(s) | 267, 359, 378, 434, 865, 901, 1243 |
| NlaIV | GGNNCC | 9 cut(s) | 689, 717, 806, 831, 848, 998, 1184, 1209, 1226 |
| NmeAIII | GCCGAG | 2 cut(s) | 701, 1010 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| NspV | TTCGAA | 1 cut(s) | 220 |
| PaeR7I | CTCGAG | 5 cut(s) | 495, 702, 841, 1011, 1219 |
| PagI | TCATGA | 1 cut(s) | 355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 320 |
| PfeI | GAWTC | 1 cut(s) | 359 |
| PfoI | TCCNGGA | 1 cut(s) | 324 |
| PleI | GAGTC | 3 cut(s) | 487, 768, 1077 |
| PmaCI | CACGTG | 2 cut(s) | 790, 1168 |
| PmlI | CACGTG | 2 cut(s) | 790, 1168 |
| PpsI | GAGTC | 3 cut(s) | 487, 768, 1077 |
| Ppu21I | YACGTR | 2 cut(s) | 790, 1168 |
| PpuMI | RGGWCCY | 4 cut(s) | 805, 846, 1183, 1224 |
| Psp5II | RGGWCCY | 4 cut(s) | 805, 846, 1183, 1224 |
| Psp6I | CCWGG | 1 cut(s) | 1440 |
| PspCI | CACGTG | 2 cut(s) | 790, 1168 |
| PspFI | CCCAGC | 3 cut(s) | 203, 725, 1034 |
| PspGI | CCWGG | 1 cut(s) | 1440 |
| PspN4I | GGNNCC | 9 cut(s) | 689, 717, 806, 831, 848, 998, 1184, 1209, 1226 |
| PspPI | GGNCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| PspPPI | RGGWCCY | 4 cut(s) | 805, 846, 1183, 1224 |
| PspXI | VCTCGAGB | 2 cut(s) | 702, 1011 |
| PsuI | RGATCY | 4 cut(s) | 687, 797, 996, 1175 |
| RsaI | GTAC | 3 cut(s) | 142, 320, 429 |
| RsaNI | GTAC | 3 cut(s) | 141, 319, 428 |
| SaqAI | TTAA | 3 cut(s) | 237, 771, 1080 |
| Sau3AI | GATC | 7 cut(s) | 438, 508, 533, 687, 797, 996, 1175 |
| Sau96I | GGNCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| ScaI | AGTACT | 2 cut(s) | 142, 320 |
| SchI | GAGTC | 3 cut(s) | 487, 769, 1078 |
| ScrFI | CCNGG | 6 cut(s) | 326, 597, 833, 1118, 1211, 1442 |
| SfaNI | GCATC | 3 cut(s) | 612, 669, 978 |
| Sfr274I | CTCGAG | 5 cut(s) | 495, 702, 841, 1011, 1219 |
| SfuI | TTCGAA | 1 cut(s) | 220 |
| SinI | GGWCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| SlaI | CTCGAG | 5 cut(s) | 495, 702, 841, 1011, 1219 |
| SmlI | CTYRAG | 7 cut(s) | 495, 702, 770, 841, 1011, 1079, 1219 |
| SmoI | CTYRAG | 7 cut(s) | 495, 702, 770, 841, 1011, 1079, 1219 |
| Sse9I | AATT | 4 cut(s) | 91, 159, 232, 1463 |
| SsiI | CCGC | 3 cut(s) | 288, 1362, 1470 |
| SspI | AATATT | 1 cut(s) | 472 |
| SspMI | CTAG | 2 cut(s) | 123, 1299 |
| StyD4I | CCNGG | 6 cut(s) | 324, 595, 831, 1116, 1209, 1440 |
| TaaI | ACNGT | 3 cut(s) | 829, 886, 1264 |
| TaiI | ACGT | 5 cut(s) | 792, 823, 1170, 1201, 1308 |
| TaqII | GACCGA | 2 cut(s) | 542, 910 |
| TasI | AATT | 4 cut(s) | 91, 159, 232, 1463 |
| TatI | WGTACW | 2 cut(s) | 140, 318 |
| TfiI | GAWTC | 1 cut(s) | 359 |
| Tru1I | TTAA | 3 cut(s) | 237, 771, 1080 |
| Tru9I | TTAA | 3 cut(s) | 237, 771, 1080 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 3 cut(s) | 152, 344, 886 |
| TspGWI | ACGGA | 1 cut(s) | 409 |
| Vha464I | CTTAAG | 2 cut(s) | 770, 1079 |
| VpaK11BI | GGWCC | 6 cut(s) | 805, 829, 846, 1183, 1207, 1224 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 854, 1232 |
| XapI | RAATTY | 3 cut(s) | 91, 159, 1463 |
| XhoI | CTCGAG | 5 cut(s) | 495, 702, 841, 1011, 1219 |
| XmnI | GAANNNNTTC | 1 cut(s) | 320 |
| XspI | CTAG | 2 cut(s) | 123, 1299 |
| ZrmI | AGTACT | 2 cut(s) | 142, 320 |