Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transferase | PF02458 | 5 - 441 | 1.6e-59 | Transferase family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 233 |
| AciI | CCGC | 2 cut(s) | 275, 842 |
| AclWI | GGATC | 1 cut(s) | 1307 |
| AcuI | CTGAAG | 1 cut(s) | 1350 |
| AcvI | CACGTG | 1 cut(s) | 743 |
| AfaI | GTAC | 4 cut(s) | 221, 579, 725, 811 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 233, 413, 1346 |
| AflII | CTTAAG | 1 cut(s) | 850 |
| AflIII | ACRYGT | 1 cut(s) | 742 |
| AgsI | TTSAA | 8 cut(s) | 163, 272, 422, 816, 1208, 1241, 1265, 1356 |
| AhlI | ACTAGT | 1 cut(s) | 758 |
| AjnI | CCWGG | 1 cut(s) | 512 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 863, 895 |
| AluBI | AGCT | 9 cut(s) | 53, 85, 331, 400, 475, 596, 620, 931, 1134 |
| AluI | AGCT | 9 cut(s) | 53, 85, 331, 400, 475, 596, 620, 931, 1134 |
| Alw26I | GTCTC | 3 cut(s) | 27, 463, 1022 |
| AlwI | GGATC | 1 cut(s) | 1307 |
| Ama87I | CYCGRG | 4 cut(s) | 731, 792, 1129, 1346 |
| Aor13HI | TCCGGA | 1 cut(s) | 233 |
| AoxI | GGCC | 2 cut(s) | 750, 1359 |
| ApeKI | GCWGC | 4 cut(s) | 53, 521, 572, 785 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 199, 231, 984, 1016 |
| AspS9I | GGNCC | 2 cut(s) | 295, 751 |
| AsuC2I | CCSGG | 3 cut(s) | 125, 1347, 1348 |
| AsuHPI | GGTGA | 4 cut(s) | 65, 856, 1052, 1285 |
| AvaI | CYCGRG | 4 cut(s) | 731, 792, 1129, 1346 |
| AvaII | GGWCC | 1 cut(s) | 295 |
| BaeGI | GKGCMC | 1 cut(s) | 732 |
| BanII | GRGCYC | 1 cut(s) | 916 |
| BbrPI | CACGTG | 1 cut(s) | 743 |
| BbsI | GAAGAC | 1 cut(s) | 151 |
| BbvI | GCAGC | 4 cut(s) | 40, 508, 584, 772 |
| BccI | CCATC | 8 cut(s) | 47, 55, 98, 476, 619, 745, 1075, 1161 |
| BciT130I | CCWGG | 1 cut(s) | 514 |
| BciVI | GTATCC | 1 cut(s) | 1043 |
| BclI | TGATCA | 1 cut(s) | 958 |
| BcnI | CCSGG | 3 cut(s) | 125, 1347, 1348 |
| BcoDI | GTCTC | 3 cut(s) | 27, 463, 1022 |
| BcuI | ACTAGT | 1 cut(s) | 758 |
| BfaI | CTAG | 7 cut(s) | 759, 926, 1073, 1112, 1140, 1280, 1304 |
| BfmI | CTRYAG | 1 cut(s) | 1098 |
| BfrI | CTTAAG | 1 cut(s) | 850 |
| BfuI | GTATCC | 1 cut(s) | 1043 |
| BisI | GCNGC | 4 cut(s) | 54, 522, 573, 786 |
| BlsI | GCNGC | 4 cut(s) | 55, 523, 574, 787 |
| BmcAI | AGTACT | 1 cut(s) | 579 |
| Bme1390I | CCNGG | 4 cut(s) | 125, 514, 1347, 1348 |
| Bme18I | GGWCC | 1 cut(s) | 295 |
| BmeT110I | CYCGRG | 4 cut(s) | 731, 792, 1129, 1346 |
| BmgT120I | GGNCC | 2 cut(s) | 295, 751 |
| BmiI | GGNNCC | 1 cut(s) | 915 |
| BmrFI | CCNGG | 4 cut(s) | 125, 514, 1347, 1348 |
| BmrI | ACTGGG | 1 cut(s) | 1312 |
| BmsI | GCATC | 1 cut(s) | 1343 |
| BmuI | ACTGGG | 1 cut(s) | 1312 |
| BpiI | GAAGAC | 1 cut(s) | 151 |
| BpuEI | CTTGAG | 3 cut(s) | 311, 491, 552 |
| BpuMI | CCSGG | 3 cut(s) | 125, 1347, 1348 |
| Bsa29I | ATCGAT | 2 cut(s) | 96, 480 |
| BsaAI | YACGTR | 2 cut(s) | 727, 743 |
| BsaJI | CCNNGG | 3 cut(s) | 513, 1345, 1346 |
| BsaWI | WCCGGW | 1 cut(s) | 233 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 408, 438 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 233, 413, 1346 |
| Bse1I | ACTGG | 1 cut(s) | 1318 |
| BseAI | TCCGGA | 1 cut(s) | 233 |
| BseBI | CCWGG | 1 cut(s) | 514 |
| BseCI | ATCGAT | 2 cut(s) | 96, 480 |
| BseDI | CCNNGG | 3 cut(s) | 513, 1345, 1346 |
| BseGI | GGATG | 2 cut(s) | 553, 1172 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 233, 413, 1346 |
| BseMII | CTCAG | 1 cut(s) | 387 |
| BseNI | ACTGG | 1 cut(s) | 1318 |
| BseSI | GKGCMC | 1 cut(s) | 732 |
| BseXI | GCAGC | 4 cut(s) | 40, 508, 584, 772 |
| BsgI | GTGCAG | 1 cut(s) | 681 |
| BshFI | GGCC | 2 cut(s) | 752, 1361 |
| BshVI | ATCGAT | 2 cut(s) | 96, 480 |
| BsiHKCI | CYCGRG | 4 cut(s) | 731, 792, 1129, 1346 |
| BsiSI | CCGG | 4 cut(s) | 125, 234, 917, 1347 |
| BslFI | GGGAC | 2 cut(s) | 107, 266 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 233, 413, 1346 |
| BsmAI | GTCTC | 3 cut(s) | 27, 463, 1022 |
| BsmFI | GGGAC | 2 cut(s) | 107, 266 |
| BsmI | GAATGC | 1 cut(s) | 920 |
| BsnI | GGCC | 2 cut(s) | 752, 1361 |
| BsoBI | CYCGRG | 4 cut(s) | 731, 792, 1129, 1346 |
| Bsp1286I | GDGCHC | 2 cut(s) | 732, 916 |
| Bsp13I | TCCGGA | 1 cut(s) | 233 |
| Bsp143I | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| BspACI | CCGC | 2 cut(s) | 275, 842 |
| BspANI | GGCC | 2 cut(s) | 752, 1361 |
| BspCNI | CTCAG | 1 cut(s) | 388 |
| BspDI | ATCGAT | 2 cut(s) | 96, 480 |
| BspEI | TCCGGA | 1 cut(s) | 233 |
| BspLI | GGNNCC | 1 cut(s) | 915 |
| BspPI | GGATC | 1 cut(s) | 1307 |
| BspTI | CTTAAG | 1 cut(s) | 850 |
| BsrI | ACTGG | 1 cut(s) | 1318 |
| BssECI | CCNNGG | 3 cut(s) | 513, 1345, 1346 |
| BssMI | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| Bst2UI | CCWGG | 1 cut(s) | 514 |
| Bst4CI | ACNGT | 3 cut(s) | 500, 1016, 1231 |
| Bst6I | CTCTTC | 2 cut(s) | 67, 1369 |
| BstAFI | CTTAAG | 1 cut(s) | 850 |
| BstBAI | YACGTR | 2 cut(s) | 727, 743 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstF5I | GGATG | 2 cut(s) | 553, 1172 |
| BstKTI | GATC | 4 cut(s) | 100, 961, 1285, 1315 |
| BstMAI | GTCTC | 3 cut(s) | 27, 463, 1022 |
| BstMBI | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 695, 794, 839 |
| BstNI | CCWGG | 1 cut(s) | 514 |
| BstNSI | RCATGY | 1 cut(s) | 1063 |
| BstSCI | CCNGG | 4 cut(s) | 123, 512, 1345, 1346 |
| BstSFI | CTRYAG | 1 cut(s) | 1098 |
| BstSLI | GKGCMC | 1 cut(s) | 732 |
| BstV1I | GCAGC | 4 cut(s) | 40, 508, 584, 772 |
| BstV2I | GAAGAC | 1 cut(s) | 151 |
| BstX2I | RGATCY | 1 cut(s) | 1312 |
| BstYI | RGATCY | 1 cut(s) | 1312 |
| Bsu15I | ATCGAT | 2 cut(s) | 96, 480 |
| BsuI | GTATCC | 1 cut(s) | 1043 |
| BsuRI | GGCC | 2 cut(s) | 752, 1361 |
| BsuTUI | ATCGAT | 2 cut(s) | 96, 480 |
| BtsCI | GGATG | 2 cut(s) | 553, 1172 |
| BtsIMutI | CAGTG | 1 cut(s) | 1021 |
| Cfr13I | GGNCC | 2 cut(s) | 295, 751 |
| Cfr9I | CCCGGG | 1 cut(s) | 1346 |
| ClaI | ATCGAT | 2 cut(s) | 96, 480 |
| Csp6I | GTAC | 4 cut(s) | 220, 578, 724, 810 |
| CviAII | CATG | 3 cut(s) | 313, 868, 1060 |
| CviQI | GTAC | 4 cut(s) | 220, 578, 724, 810 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DpnI | GATC | 4 cut(s) | 99, 960, 1284, 1314 |
| DpnII | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| DraI | TTTAAA | 1 cut(s) | 1035 |
| Eam1104I | CTCTTC | 2 cut(s) | 67, 1369 |
| EarI | CTCTTC | 2 cut(s) | 67, 1369 |
| Eco24I | GRGCYC | 1 cut(s) | 916 |
| Eco47I | GGWCC | 1 cut(s) | 295 |
| Eco57I | CTGAAG | 1 cut(s) | 1350 |
| Eco72I | CACGTG | 1 cut(s) | 743 |
| Eco88I | CYCGRG | 4 cut(s) | 731, 792, 1129, 1346 |
| EcoO109I | RGGNCCY | 1 cut(s) | 751 |
| EcoRII | CCWGG | 1 cut(s) | 512 |
| EcoT38I | GRGCYC | 1 cut(s) | 916 |
| FaeI | CATG | 3 cut(s) | 316, 871, 1063 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 811, 843 |
| FaqI | GGGAC | 2 cut(s) | 107, 266 |
| FatI | CATG | 3 cut(s) | 312, 867, 1059 |
| FauI | CCCGC | 1 cut(s) | 268 |
| FbaI | TGATCA | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 4 cut(s) | 54, 522, 573, 786 |
| FokI | GGATG | 2 cut(s) | 540, 1179 |
| FriOI | GRGCYC | 1 cut(s) | 916 |
| Fsp4HI | GCNGC | 4 cut(s) | 54, 522, 573, 786 |
| FspBI | CTAG | 7 cut(s) | 759, 926, 1073, 1112, 1140, 1280, 1304 |
| GluI | GCNGC | 4 cut(s) | 54, 522, 573, 786 |
| HaeIII | GGCC | 2 cut(s) | 752, 1361 |
| HapII | CCGG | 4 cut(s) | 125, 234, 917, 1347 |
| Hin1II | CATG | 3 cut(s) | 316, 871, 1063 |
| HincII | GTYRAC | 2 cut(s) | 427, 982 |
| HindII | GTYRAC | 2 cut(s) | 427, 982 |
| HindIII | AAGCTT | 2 cut(s) | 83, 329 |
| HinfI | GANTC | 5 cut(s) | 208, 559, 995, 1191, 1276 |
| HpaI | GTTAAC | 1 cut(s) | 982 |
| HpaII | CCGG | 4 cut(s) | 125, 234, 917, 1347 |
| HphI | GGTGA | 4 cut(s) | 65, 856, 1052, 1285 |
| Hpy166II | GTNNAC | 3 cut(s) | 427, 847, 982 |
| Hpy188I | TCNGA | 4 cut(s) | 299, 397, 558, 624 |
| Hpy188III | TCNNGA | 7 cut(s) | 30, 234, 539, 769, 858, 1129, 1280 |
| Hpy8I | GTNNAC | 3 cut(s) | 427, 847, 982 |
| Hpy99I | CGWCG | 1 cut(s) | 880 |
| HpyAV | CCTTC | 2 cut(s) | 231, 704 |
| HpyCH4III | ACNGT | 3 cut(s) | 500, 1016, 1231 |
| HpyCH4IV | ACGT | 3 cut(s) | 726, 742, 878 |
| HpyCH4V | TGCA | 2 cut(s) | 698, 1334 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 695, 794, 839 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 3 cut(s) | 726, 742, 878 |
| Hsp92II | CATG | 3 cut(s) | 316, 871, 1063 |
| Kpn2I | TCCGGA | 1 cut(s) | 233 |
| Ksp22I | TGATCA | 1 cut(s) | 958 |
| KspAI | GTTAAC | 1 cut(s) | 982 |
| Kzo9I | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| LmnI | GCTCC | 1 cut(s) | 919 |
| Lsp1109I | GCAGC | 4 cut(s) | 40, 508, 584, 772 |
| LweI | GCATC | 1 cut(s) | 1343 |
| MaeI | CTAG | 7 cut(s) | 759, 926, 1073, 1112, 1140, 1280, 1304 |
| MaeII | ACGT | 3 cut(s) | 726, 742, 878 |
| MaeIII | GTNAC | 8 cut(s) | 308, 467, 539, 658, 855, 971, 1192, 1273 |
| MalI | GATC | 4 cut(s) | 99, 960, 1284, 1314 |
| MboI | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| MboII | GAAGA | 6 cut(s) | 54, 127, 151, 158, 424, 1356 |
| MfeI | CAATTG | 1 cut(s) | 450 |
| MflI | RGATCY | 1 cut(s) | 1312 |
| MhlI | GDGCHC | 2 cut(s) | 732, 916 |
| MluCI | AATT | 6 cut(s) | 9, 304, 450, 934, 1222, 1260 |
| MlyI | GAGTC | 3 cut(s) | 202, 1200, 1270 |
| MmeI | TCCRAC | 3 cut(s) | 394, 861, 1364 |
| MnlI | CCTC | 9 cut(s) | 7, 70, 87, 180, 286, 764, 1049, 1081, 1372 |
| MroI | TCCGGA | 1 cut(s) | 233 |
| MseI | TTAA | 7 cut(s) | 179, 188, 678, 851, 981, 1034, 1381 |
| MspA1I | CMGCKG | 1 cut(s) | 53 |
| MspCI | CTTAAG | 1 cut(s) | 850 |
| MspI | CCGG | 4 cut(s) | 125, 234, 917, 1347 |
| MspR9I | CCNGG | 4 cut(s) | 125, 514, 1347, 1348 |
| MunI | CAATTG | 1 cut(s) | 450 |
| Mva1269I | GAATGC | 1 cut(s) | 920 |
| MvaI | CCWGG | 1 cut(s) | 514 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 695, 794, 839 |
| NciI | CCSGG | 3 cut(s) | 125, 1347, 1348 |
| NdeII | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| NlaIII | CATG | 3 cut(s) | 316, 871, 1063 |
| NlaIV | GGNNCC | 1 cut(s) | 915 |
| NmuCI | GTSAC | 6 cut(s) | 467, 539, 855, 971, 1192, 1273 |
| NspI | RCATGY | 1 cut(s) | 1063 |
| PaeR7I | CTCGAG | 1 cut(s) | 1129 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 535 |
| PctI | GAATGC | 1 cut(s) | 920 |
| PfeI | GAWTC | 2 cut(s) | 559, 995 |
| PflFI | GACNNNGTC | 1 cut(s) | 155 |
| PkrI | GCNGC | 4 cut(s) | 55, 523, 574, 787 |
| PleI | GAGTC | 3 cut(s) | 202, 1199, 1270 |
| PmaCI | CACGTG | 1 cut(s) | 743 |
| PmlI | CACGTG | 1 cut(s) | 743 |
| PpsI | GAGTC | 3 cut(s) | 202, 1199, 1270 |
| Ppu21I | YACGTR | 2 cut(s) | 727, 743 |
| Psp6I | CCWGG | 1 cut(s) | 512 |
| PspCI | CACGTG | 1 cut(s) | 743 |
| PspGI | CCWGG | 1 cut(s) | 512 |
| PspN4I | GGNNCC | 1 cut(s) | 915 |
| PspPI | GGNCC | 2 cut(s) | 295, 751 |
| PsuI | RGATCY | 1 cut(s) | 1312 |
| PsyI | GACNNNGTC | 1 cut(s) | 155 |
| PvuII | CAGCTG | 1 cut(s) | 53 |
| RsaI | GTAC | 4 cut(s) | 221, 579, 725, 811 |
| RsaNI | GTAC | 4 cut(s) | 220, 578, 724, 810 |
| SaqAI | TTAA | 7 cut(s) | 179, 188, 678, 851, 981, 1034, 1381 |
| SatI | GCNGC | 4 cut(s) | 54, 522, 573, 786 |
| Sau3AI | GATC | 4 cut(s) | 97, 958, 1282, 1312 |
| Sau96I | GGNCC | 2 cut(s) | 295, 751 |
| ScaI | AGTACT | 1 cut(s) | 579 |
| SchI | GAGTC | 3 cut(s) | 202, 1200, 1270 |
| ScrFI | CCNGG | 4 cut(s) | 125, 514, 1347, 1348 |
| SduI | GDGCHC | 2 cut(s) | 732, 916 |
| SfaNI | GCATC | 1 cut(s) | 1343 |
| SfcI | CTRYAG | 1 cut(s) | 1098 |
| Sfr274I | CTCGAG | 1 cut(s) | 1129 |
| SinI | GGWCC | 1 cut(s) | 295 |
| SlaI | CTCGAG | 1 cut(s) | 1129 |
| SmaI | CCCGGG | 1 cut(s) | 1348 |
| SmlI | CTYRAG | 5 cut(s) | 290, 506, 567, 850, 1129 |
| SmoI | CTYRAG | 5 cut(s) | 290, 506, 567, 850, 1129 |
| SpeI | ACTAGT | 1 cut(s) | 758 |
| Sse9I | AATT | 6 cut(s) | 9, 304, 450, 934, 1222, 1260 |
| SsiI | CCGC | 2 cut(s) | 275, 842 |
| SspI | AATATT | 1 cut(s) | 901 |
| SspMI | CTAG | 7 cut(s) | 759, 926, 1073, 1112, 1140, 1280, 1304 |
| StyD4I | CCNGG | 4 cut(s) | 123, 512, 1345, 1346 |
| TaaI | ACNGT | 3 cut(s) | 500, 1016, 1231 |
| TaiI | ACGT | 3 cut(s) | 729, 745, 881 |
| TaqI | TCGA | 5 cut(s) | 96, 172, 435, 480, 1130 |
| TasI | AATT | 6 cut(s) | 9, 304, 450, 934, 1222, 1260 |
| TatI | WGTACW | 2 cut(s) | 219, 577 |
| TfiI | GAWTC | 2 cut(s) | 559, 995 |
| Tru1I | TTAA | 7 cut(s) | 179, 188, 678, 851, 981, 1034, 1381 |
| Tru9I | TTAA | 7 cut(s) | 179, 188, 678, 851, 981, 1034, 1381 |
| TscAI | CASTG | 1 cut(s) | 1021 |
| TseFI | GTSAC | 6 cut(s) | 467, 539, 855, 971, 1192, 1273 |
| TseI | GCWGC | 4 cut(s) | 53, 521, 572, 785 |
| Tsp45I | GTSAC | 6 cut(s) | 467, 539, 855, 971, 1192, 1273 |
| TspDTI | ATGAA | 5 cut(s) | 542, 723, 878, 884, 1113 |
| TspGWI | ACGGA | 2 cut(s) | 1068, 1272 |
| TspMI | CCCGGG | 1 cut(s) | 1346 |
| TspRI | CASTG | 1 cut(s) | 1021 |
| Tth111I | GACNNNGTC | 1 cut(s) | 155 |
| Vha464I | CTTAAG | 1 cut(s) | 850 |
| VpaK11BI | GGWCC | 1 cut(s) | 295 |
| XbaI | TCTAGA | 1 cut(s) | 1279 |
| XceI | RCATGY | 1 cut(s) | 1063 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 342, 1160 |
| XhoI | CTCGAG | 1 cut(s) | 1129 |
| XmaI | CCCGGG | 1 cut(s) | 1346 |
| XspI | CTAG | 7 cut(s) | 759, 926, 1073, 1112, 1140, 1280, 1304 |
| ZrmI | AGTACT | 1 cut(s) | 579 |