Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 679 |
| AccBSI | CCGCTC | 1 cut(s) | 422 |
| AciI | CCGC | 2 cut(s) | 152, 422 |
| AclWI | GGATC | 1 cut(s) | 525 |
| AcuI | CTGAAG | 1 cut(s) | 287 |
| AfaI | GTAC | 4 cut(s) | 346, 721, 727, 761 |
| AflIII | ACRYGT | 1 cut(s) | 744 |
| AgsI | TTSAA | 4 cut(s) | 179, 274, 470, 631 |
| AhlI | ACTAGT | 1 cut(s) | 722 |
| AjiI | CACGTC | 1 cut(s) | 368 |
| AluBI | AGCT | 1 cut(s) | 356 |
| AluI | AGCT | 1 cut(s) | 356 |
| Alw26I | GTCTC | 2 cut(s) | 211, 256 |
| AlwI | GGATC | 1 cut(s) | 525 |
| Ama87I | CYCGRG | 1 cut(s) | 729 |
| AoxI | GGCC | 3 cut(s) | 227, 234, 555 |
| ApeKI | GCWGC | 2 cut(s) | 244, 356 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 30 |
| AspS9I | GGNCC | 1 cut(s) | 235 |
| AsuHPI | GGTGA | 2 cut(s) | 518, 746 |
| AvaI | CYCGRG | 1 cut(s) | 729 |
| AxyI | CCTNAGG | 1 cut(s) | 231 |
| BanI | GGYRCC | 1 cut(s) | 679 |
| BbsI | GAAGAC | 1 cut(s) | 419 |
| BbvI | GCAGC | 2 cut(s) | 256, 343 |
| BccI | CCATC | 3 cut(s) | 152, 234, 275 |
| BcoDI | GTCTC | 2 cut(s) | 211, 256 |
| BcuI | ACTAGT | 1 cut(s) | 722 |
| BfaI | CTAG | 2 cut(s) | 642, 723 |
| BisI | GCNGC | 3 cut(s) | 153, 245, 357 |
| BlsI | GCNGC | 3 cut(s) | 154, 246, 358 |
| BmcAI | AGTACT | 1 cut(s) | 727 |
| BmeT110I | CYCGRG | 1 cut(s) | 729 |
| BmgBI | CACGTC | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 1 cut(s) | 235 |
| BmiI | GGNNCC | 1 cut(s) | 681 |
| BmsI | GCATC | 3 cut(s) | 173, 181, 688 |
| BpiI | GAAGAC | 1 cut(s) | 419 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 37, 69 |
| BsaJI | CCNNGG | 2 cut(s) | 224, 753 |
| BsaWI | WCCGGW | 1 cut(s) | 186 |
| Bse21I | CCTNAGG | 1 cut(s) | 231 |
| Bse3DI | GCAATG | 1 cut(s) | 136 |
| BseDI | CCNNGG | 2 cut(s) | 224, 753 |
| BseGI | GGATG | 3 cut(s) | 456, 703, 766 |
| BseMI | GCAATG | 1 cut(s) | 136 |
| BseXI | GCAGC | 2 cut(s) | 256, 343 |
| BshFI | GGCC | 3 cut(s) | 229, 236, 557 |
| BshNI | GGYRCC | 1 cut(s) | 679 |
| BsiHKCI | CYCGRG | 1 cut(s) | 729 |
| BsiSI | CCGG | 1 cut(s) | 187 |
| BslFI | GGGAC | 1 cut(s) | 733 |
| BsmAI | GTCTC | 2 cut(s) | 211, 256 |
| BsmFI | GGGAC | 1 cut(s) | 733 |
| BsmI | GAATGC | 1 cut(s) | 287 |
| BsnI | GGCC | 3 cut(s) | 229, 236, 557 |
| BsoBI | CYCGRG | 1 cut(s) | 729 |
| Bsp1407I | TGTACA | 1 cut(s) | 759 |
| Bsp143I | GATC | 1 cut(s) | 517 |
| BspACI | CCGC | 2 cut(s) | 152, 422 |
| BspANI | GGCC | 3 cut(s) | 229, 236, 557 |
| BspLI | GGNNCC | 1 cut(s) | 681 |
| BspPI | GGATC | 1 cut(s) | 525 |
| BspT107I | GGYRCC | 1 cut(s) | 679 |
| BsrBI | CCGCTC | 1 cut(s) | 422 |
| BsrDI | GCAATG | 1 cut(s) | 136 |
| BsrGI | TGTACA | 1 cut(s) | 759 |
| BssECI | CCNNGG | 2 cut(s) | 224, 753 |
| BssMI | GATC | 1 cut(s) | 517 |
| BssT1I | CCWWGG | 1 cut(s) | 224 |
| Bst4CI | ACNGT | 3 cut(s) | 487, 551, 591 |
| Bst6I | CTCTTC | 1 cut(s) | 669 |
| BstAUI | TGTACA | 1 cut(s) | 759 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstF5I | GGATG | 3 cut(s) | 456, 703, 766 |
| BstKTI | GATC | 1 cut(s) | 520 |
| BstMAI | GTCTC | 2 cut(s) | 211, 256 |
| BstMBI | GATC | 1 cut(s) | 517 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 161, 362, 419 |
| BstNSI | RCATGY | 3 cut(s) | 38, 159, 748 |
| BstV1I | GCAGC | 2 cut(s) | 256, 343 |
| BstV2I | GAAGAC | 1 cut(s) | 419 |
| BstX2I | RGATCY | 1 cut(s) | 517 |
| BstYI | RGATCY | 1 cut(s) | 517 |
| Bsu36I | CCTNAGG | 1 cut(s) | 231 |
| BsuRI | GGCC | 3 cut(s) | 229, 236, 557 |
| BtrI | CACGTC | 1 cut(s) | 368 |
| BtsCI | GGATG | 3 cut(s) | 456, 703, 766 |
| Cfr13I | GGNCC | 1 cut(s) | 235 |
| CseI | GACGC | 1 cut(s) | 16 |
| Csp6I | GTAC | 4 cut(s) | 345, 720, 726, 760 |
| CviAII | CATG | 5 cut(s) | 35, 79, 156, 511, 745 |
| CviQI | GTAC | 4 cut(s) | 345, 720, 726, 760 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| DpnI | GATC | 1 cut(s) | 519 |
| DpnII | GATC | 1 cut(s) | 517 |
| Eam1104I | CTCTTC | 1 cut(s) | 669 |
| EarI | CTCTTC | 1 cut(s) | 669 |
| Eco130I | CCWWGG | 1 cut(s) | 224 |
| Eco147I | AGGCCT | 2 cut(s) | 229, 557 |
| Eco57I | CTGAAG | 1 cut(s) | 287 |
| Eco81I | CCTNAGG | 1 cut(s) | 231 |
| Eco88I | CYCGRG | 1 cut(s) | 729 |
| EcoT14I | CCWWGG | 1 cut(s) | 224 |
| ErhI | CCWWGG | 1 cut(s) | 224 |
| FaeI | CATG | 5 cut(s) | 38, 82, 159, 514, 748 |
| FaqI | GGGAC | 1 cut(s) | 733 |
| FatI | CATG | 5 cut(s) | 34, 78, 155, 510, 744 |
| FauI | CCCGC | 1 cut(s) | 415 |
| FauNDI | CATATG | 2 cut(s) | 294, 399 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 245, 357 |
| FokI | GGATG | 3 cut(s) | 463, 710, 753 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 245, 357 |
| FspBI | CTAG | 2 cut(s) | 642, 723 |
| GluI | GCNGC | 3 cut(s) | 153, 245, 357 |
| HaeIII | GGCC | 3 cut(s) | 229, 236, 557 |
| HapII | CCGG | 1 cut(s) | 187 |
| HgaI | GACGC | 1 cut(s) | 16 |
| Hin1II | CATG | 5 cut(s) | 38, 82, 159, 514, 748 |
| HincII | GTYRAC | 1 cut(s) | 463 |
| HindII | GTYRAC | 1 cut(s) | 463 |
| HinfI | GANTC | 3 cut(s) | 28, 46, 713 |
| HpaII | CCGG | 1 cut(s) | 187 |
| HphI | GGTGA | 2 cut(s) | 518, 746 |
| Hpy166II | GTNNAC | 3 cut(s) | 99, 463, 760 |
| Hpy188I | TCNGA | 2 cut(s) | 332, 526 |
| Hpy188III | TCNNGA | 3 cut(s) | 176, 602, 695 |
| Hpy8I | GTNNAC | 3 cut(s) | 99, 463, 760 |
| HpyAV | CCTTC | 3 cut(s) | 118, 731, 780 |
| HpyCH4III | ACNGT | 3 cut(s) | 487, 551, 591 |
| HpyCH4IV | ACGT | 2 cut(s) | 64, 367 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 116, 196, 365, 542, 575, 701 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 161, 362, 419 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| HpySE526I | ACGT | 2 cut(s) | 64, 367 |
| Hsp92II | CATG | 5 cut(s) | 38, 82, 159, 514, 748 |
| Kzo9I | GATC | 1 cut(s) | 517 |
| LmnI | GCTCC | 1 cut(s) | 284 |
| LpnPI | CCDG | 7 cut(s) | 73, 200, 288, 431, 551, 680, 696 |
| Lsp1109I | GCAGC | 2 cut(s) | 256, 343 |
| LweI | GCATC | 3 cut(s) | 173, 181, 688 |
| MaeI | CTAG | 2 cut(s) | 642, 723 |
| MaeII | ACGT | 2 cut(s) | 64, 367 |
| MaeIII | GTNAC | 4 cut(s) | 47, 490, 506, 740 |
| MalI | GATC | 1 cut(s) | 519 |
| MbiI | CCGCTC | 1 cut(s) | 422 |
| MboI | GATC | 1 cut(s) | 517 |
| MboII | GAAGA | 4 cut(s) | 191, 419, 686, 722 |
| MflI | RGATCY | 1 cut(s) | 517 |
| MluCI | AATT | 1 cut(s) | 594 |
| MlyI | GAGTC | 1 cut(s) | 55 |
| MnlI | CCTC | 7 cut(s) | 261, 305, 508, 538, 670, 725, 763 |
| MseI | TTAA | 3 cut(s) | 138, 408, 501 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| MspI | CCGG | 1 cut(s) | 187 |
| Mva1269I | GAATGC | 1 cut(s) | 287 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 161, 362, 419 |
| NdeI | CATATG | 2 cut(s) | 294, 399 |
| NdeII | GATC | 1 cut(s) | 517 |
| NlaIII | CATG | 5 cut(s) | 38, 82, 159, 514, 748 |
| NlaIV | GGNNCC | 1 cut(s) | 681 |
| NmuCI | GTSAC | 2 cut(s) | 47, 506 |
| NspI | RCATGY | 3 cut(s) | 38, 159, 748 |
| PaeR7I | CTCGAG | 1 cut(s) | 729 |
| PceI | AGGCCT | 2 cut(s) | 229, 557 |
| PciI | ACATGT | 1 cut(s) | 744 |
| PctI | GAATGC | 1 cut(s) | 287 |
| PfeI | GAWTC | 2 cut(s) | 28, 713 |
| PkrI | GCNGC | 3 cut(s) | 154, 246, 358 |
| PleI | GAGTC | 1 cut(s) | 54 |
| PpsI | GAGTC | 1 cut(s) | 54 |
| PscI | ACATGT | 1 cut(s) | 744 |
| PspN4I | GGNNCC | 1 cut(s) | 681 |
| PspPI | GGNCC | 1 cut(s) | 235 |
| PspXI | VCTCGAGB | 1 cut(s) | 729 |
| PsuI | RGATCY | 1 cut(s) | 517 |
| RsaI | GTAC | 4 cut(s) | 346, 721, 727, 761 |
| RsaNI | GTAC | 4 cut(s) | 345, 720, 726, 760 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SaqAI | TTAA | 3 cut(s) | 138, 408, 501 |
| SatI | GCNGC | 3 cut(s) | 153, 245, 357 |
| Sau3AI | GATC | 1 cut(s) | 517 |
| Sau96I | GGNCC | 1 cut(s) | 235 |
| ScaI | AGTACT | 1 cut(s) | 727 |
| SchI | GAGTC | 1 cut(s) | 55 |
| SetI | ASST | 8 cut(s) | 67, 358, 370, 580, 639, 685, 736, 742 |
| SfaNI | GCATC | 3 cut(s) | 173, 181, 688 |
| Sfr274I | CTCGAG | 1 cut(s) | 729 |
| SlaI | CTCGAG | 1 cut(s) | 729 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| SmlI | CTYRAG | 1 cut(s) | 729 |
| SmoI | CTYRAG | 1 cut(s) | 729 |
| SpeI | ACTAGT | 1 cut(s) | 722 |
| Sse9I | AATT | 1 cut(s) | 594 |
| SseBI | AGGCCT | 2 cut(s) | 229, 557 |
| SsiI | CCGC | 2 cut(s) | 152, 422 |
| SspMI | CTAG | 2 cut(s) | 642, 723 |
| StuI | AGGCCT | 2 cut(s) | 229, 557 |
| StyI | CCWWGG | 1 cut(s) | 224 |
| TaaI | ACNGT | 3 cut(s) | 487, 551, 591 |
| TaiI | ACGT | 2 cut(s) | 67, 370 |
| TaqI | TCGA | 2 cut(s) | 167, 730 |
| TasI | AATT | 1 cut(s) | 594 |
| TatI | WGTACW | 3 cut(s) | 719, 725, 759 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 2 cut(s) | 28, 713 |
| Tru1I | TTAA | 3 cut(s) | 138, 408, 501 |
| Tru9I | TTAA | 3 cut(s) | 138, 408, 501 |
| TseFI | GTSAC | 2 cut(s) | 47, 506 |
| TseI | GCWGC | 2 cut(s) | 244, 356 |
| Tsp45I | GTSAC | 2 cut(s) | 47, 506 |
| TspDTI | ATGAA | 5 cut(s) | 64, 311, 351, 572, 723 |
| TspGWI | ACGGA | 1 cut(s) | 116 |
| XceI | RCATGY | 3 cut(s) | 38, 159, 748 |
| XhoI | CTCGAG | 1 cut(s) | 729 |
| XspI | CTAG | 2 cut(s) | 642, 723 |
| ZrmI | AGTACT | 1 cut(s) | 727 |