Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transferase | PF02458 | 5 - 443 | 9.7e-68 | Transferase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 281 |
| AccIII | TCCGGA | 1 cut(s) | 239 |
| AciI | CCGC | 4 cut(s) | 148, 281, 705, 878 |
| AcsI | RAATTY | 2 cut(s) | 1019, 1155 |
| AcuI | CTGAAG | 1 cut(s) | 1067 |
| AcvI | CACGTG | 1 cut(s) | 752 |
| AfaI | GTAC | 6 cut(s) | 227, 267, 369, 820, 1034, 1251 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 239 |
| AflII | CTTAAG | 1 cut(s) | 332 |
| AflIII | ACRYGT | 2 cut(s) | 751, 767 |
| AgsI | TTSAA | 5 cut(s) | 169, 299, 713, 1196, 1271 |
| Alw26I | GTCTC | 3 cut(s) | 206, 944, 1034 |
| Ama87I | CYCGRG | 1 cut(s) | 801 |
| Aor13HI | TCCGGA | 1 cut(s) | 239 |
| AoxI | GGCC | 1 cut(s) | 863 |
| ApeKI | GCWGC | 2 cut(s) | 524, 794 |
| ApoI | RAATTY | 2 cut(s) | 1019, 1155 |
| AspLEI | GCGC | 1 cut(s) | 847 |
| AspS9I | GGNCC | 1 cut(s) | 1220 |
| AsuHPI | GGTGA | 3 cut(s) | 62, 1003, 1291 |
| AvaI | CYCGRG | 1 cut(s) | 801 |
| AvaII | GGWCC | 1 cut(s) | 1220 |
| BaeGI | GKGCMC | 1 cut(s) | 741 |
| BanII | GRGCYC | 1 cut(s) | 925 |
| BauI | CACGAG | 3 cut(s) | 597, 734, 1141 |
| BbrPI | CACGTG | 1 cut(s) | 752 |
| BbvI | GCAGC | 2 cut(s) | 511, 781 |
| BccI | CCATC | 8 cut(s) | 55, 104, 384, 437, 482, 754, 1087, 1173 |
| BclI | TGATCA | 1 cut(s) | 970 |
| BcoDI | GTCTC | 3 cut(s) | 206, 944, 1034 |
| BfaI | CTAG | 4 cut(s) | 1085, 1152, 1310, 1331 |
| BfmI | CTRYAG | 1 cut(s) | 837 |
| BfrI | CTTAAG | 1 cut(s) | 332 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 803 |
| BisI | GCNGC | 2 cut(s) | 525, 795 |
| BlsI | GCNGC | 2 cut(s) | 526, 796 |
| BmcAI | AGTACT | 1 cut(s) | 1034 |
| Bme18I | GGWCC | 1 cut(s) | 1220 |
| BmeT110I | CYCGRG | 1 cut(s) | 801 |
| BmgT120I | GGNCC | 1 cut(s) | 1220 |
| BmiI | GGNNCC | 2 cut(s) | 924, 1069 |
| BmsI | GCATC | 2 cut(s) | 679, 1349 |
| BpuEI | CTTGAG | 5 cut(s) | 214, 288, 371, 497, 880 |
| BsaAI | YACGTR | 2 cut(s) | 265, 752 |
| BsaI | GGTCTC | 1 cut(s) | 206 |
| BsaWI | WCCGGW | 2 cut(s) | 239, 925 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 191, 221, 626, 656 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 239 |
| Bse1I | ACTGG | 1 cut(s) | 371 |
| Bse3DI | GCAATG | 1 cut(s) | 462 |
| BseAI | TCCGGA | 1 cut(s) | 239 |
| BseGI | GGATG | 2 cut(s) | 376, 1184 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BseMI | GCAATG | 1 cut(s) | 462 |
| BseMII | CTCAG | 1 cut(s) | 393 |
| BseNI | ACTGG | 1 cut(s) | 371 |
| BseSI | GKGCMC | 1 cut(s) | 741 |
| BseXI | GCAGC | 2 cut(s) | 511, 781 |
| BseYI | CCCAGC | 1 cut(s) | 161 |
| Bsh1236I | CGCG | 1 cut(s) | 281 |
| BshFI | GGCC | 1 cut(s) | 865 |
| BsiHKCI | CYCGRG | 1 cut(s) | 801 |
| BsiSI | CCGG | 2 cut(s) | 240, 926 |
| BslFI | GGGAC | 3 cut(s) | 113, 143, 1117 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BsmAI | GTCTC | 3 cut(s) | 206, 944, 1034 |
| BsmFI | GGGAC | 3 cut(s) | 113, 143, 1117 |
| BsmI | GAATGC | 1 cut(s) | 1136 |
| BsnI | GGCC | 1 cut(s) | 865 |
| Bso31I | GGTCTC | 1 cut(s) | 206 |
| BsoBI | CYCGRG | 1 cut(s) | 801 |
| Bsp1286I | GDGCHC | 2 cut(s) | 741, 925 |
| Bsp13I | TCCGGA | 1 cut(s) | 239 |
| Bsp143I | GATC | 3 cut(s) | 103, 970, 1258 |
| BspACI | CCGC | 4 cut(s) | 148, 281, 705, 878 |
| BspANI | GGCC | 1 cut(s) | 865 |
| BspCNI | CTCAG | 1 cut(s) | 394 |
| BspEI | TCCGGA | 1 cut(s) | 239 |
| BspFNI | CGCG | 1 cut(s) | 281 |
| BspHI | TCATGA | 2 cut(s) | 973, 1003 |
| BspLI | GGNNCC | 2 cut(s) | 924, 1069 |
| BspTI | CTTAAG | 1 cut(s) | 332 |
| BspTNI | GGTCTC | 1 cut(s) | 206 |
| BsrDI | GCAATG | 1 cut(s) | 462 |
| BsrI | ACTGG | 1 cut(s) | 371 |
| BssMI | GATC | 3 cut(s) | 103, 970, 1258 |
| BssSI | CACGAG | 3 cut(s) | 597, 734, 1141 |
| Bst2BI | CACGAG | 3 cut(s) | 597, 734, 1141 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 157, 981 |
| Bst6I | CTCTTC | 3 cut(s) | 67, 575, 942 |
| BstAFI | CTTAAG | 1 cut(s) | 332 |
| BstBAI | YACGTR | 2 cut(s) | 265, 752 |
| BstC8I | GCNNGC | 2 cut(s) | 731, 849 |
| BstDEI | CTNAG | 1 cut(s) | 402 |
| BstF5I | GGATG | 2 cut(s) | 376, 1184 |
| BstFNI | CGCG | 1 cut(s) | 281 |
| BstHHI | GCGC | 1 cut(s) | 847 |
| BstKTI | GATC | 3 cut(s) | 106, 973, 1261 |
| BstMAI | GTCTC | 3 cut(s) | 206, 944, 1034 |
| BstMBI | GATC | 3 cut(s) | 103, 970, 1258 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 428, 704, 803 |
| BstNSI | RCATGY | 5 cut(s) | 322, 426, 771, 851, 1000 |
| BstSFI | CTRYAG | 1 cut(s) | 837 |
| BstSLI | GKGCMC | 1 cut(s) | 741 |
| BstSNI | TACGTA | 1 cut(s) | 265 |
| BstUI | CGCG | 1 cut(s) | 281 |
| BstV1I | GCAGC | 2 cut(s) | 511, 781 |
| BsuRI | GGCC | 1 cut(s) | 865 |
| BtgZI | GCGATG | 1 cut(s) | 403 |
| BtsCI | GGATG | 2 cut(s) | 376, 1184 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 2 cut(s) | 731, 849 |
| CciI | TCATGA | 2 cut(s) | 973, 1003 |
| CfoI | GCGC | 1 cut(s) | 847 |
| Cfr13I | GGNCC | 1 cut(s) | 1220 |
| CseI | GACGC | 1 cut(s) | 287 |
| Csp6I | GTAC | 6 cut(s) | 226, 266, 368, 819, 1033, 1250 |
| CviQI | GTAC | 6 cut(s) | 226, 266, 368, 819, 1033, 1250 |
| DdeI | CTNAG | 1 cut(s) | 402 |
| DpnI | GATC | 3 cut(s) | 105, 972, 1260 |
| DpnII | GATC | 3 cut(s) | 103, 970, 1258 |
| Eam1104I | CTCTTC | 3 cut(s) | 67, 575, 942 |
| EarI | CTCTTC | 3 cut(s) | 67, 575, 942 |
| Eco105I | TACGTA | 1 cut(s) | 265 |
| Eco24I | GRGCYC | 1 cut(s) | 925 |
| Eco31I | GGTCTC | 1 cut(s) | 206 |
| Eco32I | GATATC | 1 cut(s) | 940 |
| Eco47I | GGWCC | 1 cut(s) | 1220 |
| Eco57I | CTGAAG | 1 cut(s) | 1067 |
| Eco72I | CACGTG | 1 cut(s) | 752 |
| Eco88I | CYCGRG | 1 cut(s) | 801 |
| EcoRI | GAATTC | 1 cut(s) | 1155 |
| EcoRV | GATATC | 1 cut(s) | 940 |
| EcoT22I | ATGCAT | 1 cut(s) | 1138 |
| EcoT38I | GRGCYC | 1 cut(s) | 925 |
| FaqI | GGGAC | 3 cut(s) | 113, 143, 1117 |
| FauI | CCCGC | 2 cut(s) | 274, 885 |
| FbaI | TGATCA | 1 cut(s) | 970 |
| Fnu4HI | GCNGC | 2 cut(s) | 525, 795 |
| FokI | GGATG | 2 cut(s) | 363, 1191 |
| FriOI | GRGCYC | 1 cut(s) | 925 |
| Fsp4HI | GCNGC | 2 cut(s) | 525, 795 |
| FspBI | CTAG | 4 cut(s) | 1085, 1152, 1310, 1331 |
| GlaI | GCGC | 1 cut(s) | 846 |
| GluI | GCNGC | 2 cut(s) | 525, 795 |
| GsaI | CCCAGC | 1 cut(s) | 165 |
| HaeIII | GGCC | 1 cut(s) | 865 |
| HapII | CCGG | 2 cut(s) | 240, 926 |
| HgaI | GACGC | 1 cut(s) | 287 |
| HhaI | GCGC | 1 cut(s) | 847 |
| Hin6I | GCGC | 1 cut(s) | 845 |
| HinP1I | GCGC | 1 cut(s) | 845 |
| HincII | GTYRAC | 1 cut(s) | 7 |
| HindII | GTYRAC | 1 cut(s) | 7 |
| HindIII | AAGCTT | 2 cut(s) | 89, 335 |
| HinfI | GANTC | 5 cut(s) | 398, 1007, 1042, 1203, 1319 |
| HpaII | CCGG | 2 cut(s) | 240, 926 |
| HphI | GGTGA | 3 cut(s) | 62, 1003, 1291 |
| Hpy166II | GTNNAC | 3 cut(s) | 7, 856, 994 |
| Hpy188I | TCNGA | 4 cut(s) | 211, 403, 1047, 1211 |
| Hpy188III | TCNNGA | 9 cut(s) | 30, 240, 341, 514, 778, 974, 1004, 1141, 1262 |
| Hpy8I | GTNNAC | 3 cut(s) | 7, 856, 994 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyAV | CCTTC | 5 cut(s) | 83, 237, 1042, 1052, 1094 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 157, 981 |
| HpyCH4IV | ACGT | 3 cut(s) | 264, 666, 751 |
| HpyCH4V | TGCA | 3 cut(s) | 851, 1136, 1340 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 428, 704, 803 |
| HpyF3I | CTNAG | 1 cut(s) | 402 |
| HpySE526I | ACGT | 3 cut(s) | 264, 666, 751 |
| HspAI | GCGC | 1 cut(s) | 845 |
| Kpn2I | TCCGGA | 1 cut(s) | 239 |
| Ksp22I | TGATCA | 1 cut(s) | 970 |
| Kzo9I | GATC | 3 cut(s) | 103, 970, 1258 |
| LmnI | GCTCC | 2 cut(s) | 928, 1067 |
| Lsp1109I | GCAGC | 2 cut(s) | 511, 781 |
| LweI | GCATC | 2 cut(s) | 679, 1349 |
| MaeI | CTAG | 4 cut(s) | 1085, 1152, 1310, 1331 |
| MaeII | ACGT | 3 cut(s) | 264, 666, 751 |
| MaeIII | GTNAC | 7 cut(s) | 16, 314, 493, 667, 983, 1076, 1279 |
| MalI | GATC | 3 cut(s) | 105, 972, 1260 |
| MboI | GATC | 3 cut(s) | 103, 970, 1258 |
| MboII | GAAGA | 6 cut(s) | 54, 91, 133, 430, 562, 959 |
| MfeI | CAATTG | 1 cut(s) | 310 |
| MhlI | GDGCHC | 2 cut(s) | 741, 925 |
| MluCI | AATT | 6 cut(s) | 310, 1019, 1155, 1197, 1266, 1325 |
| MlyI | GAGTC | 2 cut(s) | 1036, 1212 |
| MmeI | TCCRAC | 2 cut(s) | 870, 1198 |
| Mph1103I | ATGCAT | 1 cut(s) | 1138 |
| MroI | TCCGGA | 1 cut(s) | 239 |
| MseI | TTAA | 4 cut(s) | 42, 333, 1023, 1161 |
| MslI | CAYNNNNRTG | 1 cut(s) | 766 |
| MspCI | CTTAAG | 1 cut(s) | 332 |
| MspI | CCGG | 2 cut(s) | 240, 926 |
| MunI | CAATTG | 1 cut(s) | 310 |
| Mva1269I | GAATGC | 1 cut(s) | 1136 |
| MvnI | CGCG | 1 cut(s) | 281 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 428, 704, 803 |
| NdeII | GATC | 3 cut(s) | 103, 970, 1258 |
| NlaIV | GGNNCC | 2 cut(s) | 924, 1069 |
| NmuCI | GTSAC | 5 cut(s) | 16, 314, 983, 1076, 1279 |
| NsiI | ATGCAT | 1 cut(s) | 1138 |
| NspI | RCATGY | 5 cut(s) | 322, 426, 771, 851, 1000 |
| PaeI | GCATGC | 1 cut(s) | 851 |
| PagI | TCATGA | 2 cut(s) | 973, 1003 |
| PciI | ACATGT | 1 cut(s) | 767 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1254 |
| PctI | GAATGC | 1 cut(s) | 1136 |
| PfeI | GAWTC | 3 cut(s) | 398, 1007, 1319 |
| PkrI | GCNGC | 2 cut(s) | 526, 796 |
| PleI | GAGTC | 2 cut(s) | 1036, 1211 |
| PmaCI | CACGTG | 1 cut(s) | 752 |
| PmlI | CACGTG | 1 cut(s) | 752 |
| PpsI | GAGTC | 2 cut(s) | 1036, 1211 |
| Ppu21I | YACGTR | 2 cut(s) | 265, 752 |
| PscI | ACATGT | 1 cut(s) | 767 |
| PspCI | CACGTG | 1 cut(s) | 752 |
| PspFI | CCCAGC | 1 cut(s) | 161 |
| PspN4I | GGNNCC | 2 cut(s) | 924, 1069 |
| PspPI | GGNCC | 1 cut(s) | 1220 |
| RsaI | GTAC | 6 cut(s) | 227, 267, 369, 820, 1034, 1251 |
| RsaNI | GTAC | 6 cut(s) | 226, 266, 368, 819, 1033, 1250 |
| RseI | CAYNNNNRTG | 1 cut(s) | 766 |
| SaqAI | TTAA | 4 cut(s) | 42, 333, 1023, 1161 |
| SatI | GCNGC | 2 cut(s) | 525, 795 |
| Sau3AI | GATC | 3 cut(s) | 103, 970, 1258 |
| Sau96I | GGNCC | 1 cut(s) | 1220 |
| ScaI | AGTACT | 1 cut(s) | 1034 |
| SchI | GAGTC | 2 cut(s) | 1036, 1212 |
| SduI | GDGCHC | 2 cut(s) | 741, 925 |
| SfaNI | GCATC | 2 cut(s) | 679, 1349 |
| SfcI | CTRYAG | 1 cut(s) | 837 |
| SinI | GGWCC | 1 cut(s) | 1220 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 766 |
| SmlI | CTYRAG | 6 cut(s) | 193, 303, 332, 386, 512, 859 |
| SmoI | CTYRAG | 6 cut(s) | 193, 303, 332, 386, 512, 859 |
| SnaBI | TACGTA | 1 cut(s) | 265 |
| SphI | GCATGC | 1 cut(s) | 851 |
| Sse9I | AATT | 6 cut(s) | 310, 1019, 1155, 1197, 1266, 1325 |
| SsiI | CCGC | 4 cut(s) | 148, 281, 705, 878 |
| SspMI | CTAG | 4 cut(s) | 1085, 1152, 1310, 1331 |
| TaaI | ACNGT | 3 cut(s) | 22, 157, 981 |
| TaiI | ACGT | 3 cut(s) | 267, 669, 754 |
| TaqI | TCGA | 8 cut(s) | 102, 276, 324, 340, 441, 648, 1017, 1170 |
| TasI | AATT | 6 cut(s) | 310, 1019, 1155, 1197, 1266, 1325 |
| TatI | WGTACW | 2 cut(s) | 225, 1032 |
| TfiI | GAWTC | 3 cut(s) | 398, 1007, 1319 |
| Tru1I | TTAA | 4 cut(s) | 42, 333, 1023, 1161 |
| Tru9I | TTAA | 4 cut(s) | 42, 333, 1023, 1161 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TseFI | GTSAC | 5 cut(s) | 16, 314, 983, 1076, 1279 |
| TseI | GCWGC | 2 cut(s) | 524, 794 |
| Tsp45I | GTSAC | 5 cut(s) | 16, 314, 983, 1076, 1279 |
| TspDTI | ATGAA | 4 cut(s) | 887, 990, 992, 1020 |
| TspRI | CASTG | 1 cut(s) | 25 |
| Vha464I | CTTAAG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 1 cut(s) | 1220 |
| XapI | RAATTY | 2 cut(s) | 1019, 1155 |
| XceI | RCATGY | 5 cut(s) | 322, 426, 771, 851, 1000 |
| XspI | CTAG | 4 cut(s) | 1085, 1152, 1310, 1331 |
| ZrmI | AGTACT | 1 cut(s) | 1034 |
| Zsp2I | ATGCAT | 1 cut(s) | 1138 |