Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 368, 593 |
| AciI | CCGC | 5 cut(s) | 164, 244, 420, 428, 553 |
| AclWI | GGATC | 2 cut(s) | 621, 646 |
| AcoI | YGGCCR | 1 cut(s) | 60 |
| AcuI | CTGAAG | 2 cut(s) | 456, 662 |
| AfaI | GTAC | 3 cut(s) | 151, 188, 396 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 163, 318, 532 |
| AgsI | TTSAA | 3 cut(s) | 37, 127, 468 |
| AjnI | CCWGG | 2 cut(s) | 57, 239 |
| AluBI | AGCT | 3 cut(s) | 17, 434, 584 |
| AluI | AGCT | 3 cut(s) | 17, 434, 584 |
| Alw21I | GWGCWC | 1 cut(s) | 664 |
| Alw26I | GTCTC | 1 cut(s) | 474 |
| AlwI | GGATC | 2 cut(s) | 621, 646 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 332 |
| Ama87I | CYCGRG | 1 cut(s) | 579 |
| AoxI | GGCC | 2 cut(s) | 60, 320 |
| ApeKI | GCWGC | 3 cut(s) | 389, 584, 700 |
| AspA2I | CCTAGG | 1 cut(s) | 655 |
| AspLEI | GCGC | 1 cut(s) | 133 |
| AspS9I | GGNCC | 1 cut(s) | 491 |
| AsuC2I | CCSGG | 1 cut(s) | 610 |
| AvaI | CYCGRG | 1 cut(s) | 579 |
| AvaII | GGWCC | 1 cut(s) | 491 |
| AvrII | CCTAGG | 1 cut(s) | 655 |
| BalI | TGGCCA | 1 cut(s) | 62 |
| BanII | GRGCYC | 1 cut(s) | 508 |
| BbsI | GAAGAC | 1 cut(s) | 675 |
| Bbv12I | GWGCWC | 1 cut(s) | 664 |
| BbvI | GCAGC | 3 cut(s) | 376, 571, 687 |
| BccI | CCATC | 4 cut(s) | 75, 105, 190, 681 |
| BciT130I | CCWGG | 2 cut(s) | 59, 241 |
| BcnI | CCSGG | 1 cut(s) | 610 |
| BcoDI | GTCTC | 1 cut(s) | 474 |
| BfaI | CTAG | 1 cut(s) | 656 |
| BfmI | CTRYAG | 1 cut(s) | 645 |
| BfoI | RGCGCY | 1 cut(s) | 134 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 68 |
| BisI | GCNGC | 3 cut(s) | 390, 585, 701 |
| BlnI | CCTAGG | 1 cut(s) | 655 |
| BlsI | GCNGC | 3 cut(s) | 391, 586, 702 |
| Bme1390I | CCNGG | 3 cut(s) | 59, 241, 610 |
| Bme18I | GGWCC | 1 cut(s) | 491 |
| BmeT110I | CYCGRG | 1 cut(s) | 579 |
| BmgT120I | GGNCC | 1 cut(s) | 491 |
| BmrFI | CCNGG | 3 cut(s) | 59, 241, 610 |
| BmrI | ACTGGG | 1 cut(s) | 522 |
| BmuI | ACTGGG | 1 cut(s) | 522 |
| BpiI | GAAGAC | 1 cut(s) | 675 |
| BpmI | CTGGAG | 2 cut(s) | 309, 520 |
| BpuMI | CCSGG | 1 cut(s) | 610 |
| BsaI | GGTCTC | 1 cut(s) | 474 |
| BsaJI | CCNNGG | 2 cut(s) | 609, 655 |
| BsaWI | WCCGGW | 1 cut(s) | 493 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 163, 318, 532 |
| Bse1I | ACTGG | 5 cut(s) | 290, 364, 457, 528, 631 |
| BseBI | CCWGG | 2 cut(s) | 59, 241 |
| BseDI | CCNNGG | 2 cut(s) | 609, 655 |
| BseGI | GGATG | 3 cut(s) | 86, 97, 388 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 163, 318, 532 |
| BseMII | CTCAG | 1 cut(s) | 428 |
| BseNI | ACTGG | 5 cut(s) | 290, 364, 457, 528, 631 |
| BseRI | GAGGAG | 2 cut(s) | 211, 654 |
| BseXI | GCAGC | 3 cut(s) | 376, 571, 687 |
| BshFI | GGCC | 2 cut(s) | 62, 322 |
| BsiHKAI | GWGCWC | 1 cut(s) | 664 |
| BsiHKCI | CYCGRG | 1 cut(s) | 579 |
| BsiSI | CCGG | 3 cut(s) | 319, 494, 609 |
| BslFI | GGGAC | 2 cut(s) | 509, 621 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 163, 318, 532 |
| BsmAI | GTCTC | 1 cut(s) | 474 |
| BsmFI | GGGAC | 2 cut(s) | 509, 621 |
| BsnI | GGCC | 2 cut(s) | 62, 322 |
| Bso31I | GGTCTC | 1 cut(s) | 474 |
| BsoBI | CYCGRG | 1 cut(s) | 579 |
| Bsp1286I | GDGCHC | 2 cut(s) | 508, 664 |
| Bsp143I | GATC | 3 cut(s) | 439, 613, 651 |
| BspACI | CCGC | 5 cut(s) | 164, 244, 420, 428, 553 |
| BspANI | GGCC | 2 cut(s) | 62, 322 |
| BspCNI | CTCAG | 1 cut(s) | 427 |
| BspPI | GGATC | 2 cut(s) | 621, 646 |
| BspTNI | GGTCTC | 1 cut(s) | 474 |
| BsrI | ACTGG | 5 cut(s) | 290, 364, 457, 528, 631 |
| BssECI | CCNNGG | 2 cut(s) | 609, 655 |
| BssMI | GATC | 3 cut(s) | 439, 613, 651 |
| BssT1I | CCWWGG | 1 cut(s) | 655 |
| Bst2UI | CCWGG | 2 cut(s) | 59, 241 |
| Bst4CI | ACNGT | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 2 cut(s) | 228, 555 |
| BstDEI | CTNAG | 2 cut(s) | 313, 414 |
| BstF5I | GGATG | 3 cut(s) | 86, 97, 388 |
| BstH2I | RGCGCY | 1 cut(s) | 134 |
| BstHHI | GCGC | 1 cut(s) | 133 |
| BstKTI | GATC | 3 cut(s) | 442, 616, 654 |
| BstMAI | GTCTC | 1 cut(s) | 474 |
| BstMBI | GATC | 3 cut(s) | 439, 613, 651 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 82, 223, 559 |
| BstNI | CCWGG | 2 cut(s) | 59, 241 |
| BstSCI | CCNGG | 3 cut(s) | 57, 239, 608 |
| BstSFI | CTRYAG | 1 cut(s) | 645 |
| BstV1I | GCAGC | 3 cut(s) | 376, 571, 687 |
| BstV2I | GAAGAC | 1 cut(s) | 675 |
| BstX2I | RGATCY | 2 cut(s) | 613, 651 |
| BstYI | RGATCY | 2 cut(s) | 613, 651 |
| BsuRI | GGCC | 2 cut(s) | 62, 322 |
| BtsCI | GGATG | 3 cut(s) | 86, 97, 388 |
| BtsI | GCAGTG | 2 cut(s) | 159, 564 |
| BtsIMutI | CAGTG | 3 cut(s) | 159, 564, 638 |
| Cac8I | GCNNGC | 2 cut(s) | 228, 555 |
| CaiI | CAGNNNCTG | 1 cut(s) | 332 |
| CfoI | GCGC | 1 cut(s) | 133 |
| Cfr13I | GGNCC | 1 cut(s) | 491 |
| Csp6I | GTAC | 3 cut(s) | 150, 187, 395 |
| CviAII | CATG | 5 cut(s) | 47, 64, 146, 372, 448 |
| CviQI | GTAC | 3 cut(s) | 150, 187, 395 |
| DdeI | CTNAG | 2 cut(s) | 313, 414 |
| DpnI | GATC | 3 cut(s) | 441, 615, 653 |
| DpnII | GATC | 3 cut(s) | 439, 613, 651 |
| EaeI | YGGCCR | 1 cut(s) | 60 |
| EciI | GGCGGA | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 1 cut(s) | 655 |
| Eco24I | GRGCYC | 1 cut(s) | 508 |
| Eco31I | GGTCTC | 1 cut(s) | 474 |
| Eco47I | GGWCC | 1 cut(s) | 491 |
| Eco57I | CTGAAG | 2 cut(s) | 456, 662 |
| Eco88I | CYCGRG | 1 cut(s) | 579 |
| EcoRII | CCWGG | 2 cut(s) | 57, 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 655 |
| EcoT38I | GRGCYC | 1 cut(s) | 508 |
| ErhI | CCWWGG | 1 cut(s) | 655 |
| FaeI | CATG | 5 cut(s) | 50, 67, 149, 375, 451 |
| FaqI | GGGAC | 2 cut(s) | 509, 621 |
| FatI | CATG | 5 cut(s) | 46, 63, 145, 371, 447 |
| FauI | CCCGC | 1 cut(s) | 546 |
| FblI | GTMKAC | 2 cut(s) | 368, 593 |
| Fnu4HI | GCNGC | 3 cut(s) | 390, 585, 701 |
| FokI | GGATG | 3 cut(s) | 84, 93, 395 |
| FriOI | GRGCYC | 1 cut(s) | 508 |
| Fsp4HI | GCNGC | 3 cut(s) | 390, 585, 701 |
| FspBI | CTAG | 1 cut(s) | 656 |
| GlaI | GCGC | 1 cut(s) | 132 |
| GluI | GCNGC | 3 cut(s) | 390, 585, 701 |
| GsuI | CTGGAG | 2 cut(s) | 309, 520 |
| HaeII | RGCGCY | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 62, 322 |
| HapII | CCGG | 3 cut(s) | 319, 494, 609 |
| HhaI | GCGC | 1 cut(s) | 133 |
| Hin1II | CATG | 5 cut(s) | 50, 67, 149, 375, 451 |
| Hin6I | GCGC | 1 cut(s) | 131 |
| HinP1I | GCGC | 1 cut(s) | 131 |
| HincII | GTYRAC | 1 cut(s) | 594 |
| HindII | GTYRAC | 1 cut(s) | 594 |
| HinfI | GANTC | 2 cut(s) | 278, 289 |
| HpaII | CCGG | 3 cut(s) | 319, 494, 609 |
| Hpy166II | GTNNAC | 2 cut(s) | 369, 594 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 2 cut(s) | 326, 499 |
| Hpy8I | GTNNAC | 2 cut(s) | 369, 594 |
| HpyAV | CCTTC | 5 cut(s) | 17, 111, 508, 581, 649 |
| HpyCH4III | ACNGT | 1 cut(s) | 334 |
| HpyCH4V | TGCA | 4 cut(s) | 350, 562, 619, 703 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 82, 223, 559 |
| HpyF3I | CTNAG | 2 cut(s) | 313, 414 |
| Hsp92II | CATG | 5 cut(s) | 50, 67, 149, 375, 451 |
| HspAI | GCGC | 1 cut(s) | 131 |
| Kzo9I | GATC | 3 cut(s) | 439, 613, 651 |
| LmnI | GCTCC | 2 cut(s) | 175, 667 |
| Lsp1109I | GCAGC | 3 cut(s) | 376, 571, 687 |
| MaeI | CTAG | 1 cut(s) | 656 |
| MalI | GATC | 3 cut(s) | 441, 615, 653 |
| MboI | GATC | 3 cut(s) | 439, 613, 651 |
| MboII | GAAGA | 3 cut(s) | 35, 668, 675 |
| MflI | RGATCY | 2 cut(s) | 613, 651 |
| MhlI | GDGCHC | 2 cut(s) | 508, 664 |
| MlsI | TGGCCA | 1 cut(s) | 62 |
| MluNI | TGGCCA | 1 cut(s) | 62 |
| MmeI | TCCRAC | 1 cut(s) | 457 |
| Mox20I | TGGCCA | 1 cut(s) | 62 |
| MscI | TGGCCA | 1 cut(s) | 62 |
| MseI | TTAA | 2 cut(s) | 236, 360 |
| MslI | CAYNNNNRTG | 1 cut(s) | 376 |
| Msp20I | TGGCCA | 1 cut(s) | 62 |
| MspI | CCGG | 3 cut(s) | 319, 494, 609 |
| MspR9I | CCNGG | 3 cut(s) | 59, 241, 610 |
| MvaI | CCWGG | 2 cut(s) | 59, 241 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 82, 223, 559 |
| NciI | CCSGG | 1 cut(s) | 610 |
| NdeII | GATC | 3 cut(s) | 439, 613, 651 |
| NlaIII | CATG | 5 cut(s) | 50, 67, 149, 375, 451 |
| PaeR7I | CTCGAG | 1 cut(s) | 579 |
| PfeI | GAWTC | 2 cut(s) | 278, 289 |
| PkrI | GCNGC | 3 cut(s) | 391, 586, 702 |
| Psp6I | CCWGG | 2 cut(s) | 57, 239 |
| PspGI | CCWGG | 2 cut(s) | 57, 239 |
| PspPI | GGNCC | 1 cut(s) | 491 |
| PspXI | VCTCGAGB | 1 cut(s) | 579 |
| PstNI | CAGNNNCTG | 1 cut(s) | 332 |
| PsuI | RGATCY | 2 cut(s) | 613, 651 |
| RsaI | GTAC | 3 cut(s) | 151, 188, 396 |
| RsaNI | GTAC | 3 cut(s) | 150, 187, 395 |
| RseI | CAYNNNNRTG | 1 cut(s) | 376 |
| SalI | GTCGAC | 1 cut(s) | 592 |
| SaqAI | TTAA | 2 cut(s) | 236, 360 |
| SatI | GCNGC | 3 cut(s) | 390, 585, 701 |
| Sau3AI | GATC | 3 cut(s) | 439, 613, 651 |
| Sau96I | GGNCC | 1 cut(s) | 491 |
| ScrFI | CCNGG | 3 cut(s) | 59, 241, 610 |
| SduI | GDGCHC | 2 cut(s) | 508, 664 |
| SfcI | CTRYAG | 1 cut(s) | 645 |
| Sfr274I | CTCGAG | 1 cut(s) | 579 |
| SinI | GGWCC | 1 cut(s) | 491 |
| SlaI | CTCGAG | 1 cut(s) | 579 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 376 |
| SmlI | CTYRAG | 2 cut(s) | 18, 579 |
| SmoI | CTYRAG | 2 cut(s) | 18, 579 |
| SsiI | CCGC | 5 cut(s) | 164, 244, 420, 428, 553 |
| SspMI | CTAG | 1 cut(s) | 656 |
| StyD4I | CCNGG | 3 cut(s) | 57, 239, 608 |
| StyI | CCWWGG | 1 cut(s) | 655 |
| TaaI | ACNGT | 1 cut(s) | 334 |
| TaqI | TCGA | 2 cut(s) | 580, 593 |
| TatI | WGTACW | 1 cut(s) | 394 |
| TfiI | GAWTC | 2 cut(s) | 278, 289 |
| Tru1I | TTAA | 2 cut(s) | 236, 360 |
| Tru9I | TTAA | 2 cut(s) | 236, 360 |
| TscAI | CASTG | 3 cut(s) | 166, 564, 638 |
| TseI | GCWGC | 3 cut(s) | 389, 584, 700 |
| TspDTI | ATGAA | 2 cut(s) | 35, 675 |
| TspGWI | ACGGA | 1 cut(s) | 657 |
| TspRI | CASTG | 3 cut(s) | 166, 564, 638 |
| VpaK11BI | GGWCC | 1 cut(s) | 491 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 189 |
| XhoI | CTCGAG | 1 cut(s) | 579 |
| XmaJI | CCTAGG | 1 cut(s) | 655 |
| XmiI | GTMKAC | 2 cut(s) | 368, 593 |
| XspI | CTAG | 1 cut(s) | 656 |