Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1144 |
| AccII | CGCG | 1 cut(s) | 1564 |
| AciI | CCGC | 4 cut(s) | 235, 491, 608, 1144 |
| AclI | AACGTT | 1 cut(s) | 690 |
| AclWI | GGATC | 1 cut(s) | 1345 |
| AcsI | RAATTY | 2 cut(s) | 194, 322 |
| AfaI | GTAC | 2 cut(s) | 82, 160 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 557, 1736 |
| AflIII | ACRYGT | 1 cut(s) | 1095 |
| AjnI | CCWGG | 2 cut(s) | 562, 1688 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 99, 131 |
| AleI | CACNNNNGTG | 2 cut(s) | 137, 932 |
| AluBI | AGCT | 6 cut(s) | 190, 293, 812, 1208, 1288, 1463 |
| AluI | AGCT | 6 cut(s) | 190, 293, 812, 1208, 1288, 1463 |
| AlwI | GGATC | 1 cut(s) | 1345 |
| Ama87I | CYCGRG | 1 cut(s) | 721 |
| AoxI | GGCC | 4 cut(s) | 232, 559, 633, 1299 |
| ApoI | RAATTY | 2 cut(s) | 194, 322 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1151, 1183 |
| AseI | ATTAAT | 1 cut(s) | 678 |
| AspLEI | GCGC | 1 cut(s) | 1564 |
| AspS9I | GGNCC | 2 cut(s) | 560, 566 |
| AsuC2I | CCSGG | 2 cut(s) | 722, 723 |
| AsuHPI | GGTGA | 4 cut(s) | 212, 409, 466, 1069 |
| AsuNHI | GCTAGC | 1 cut(s) | 302 |
| AvaI | CYCGRG | 1 cut(s) | 721 |
| AvaII | GGWCC | 1 cut(s) | 566 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1415, 1448 |
| BanII | GRGCYC | 1 cut(s) | 1403 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1594, 1626 |
| BbsI | GAAGAC | 3 cut(s) | 1166, 1559, 1767 |
| BccI | CCATC | 3 cut(s) | 92, 566, 957 |
| BceAI | ACGGC | 2 cut(s) | 620, 800 |
| BciT130I | CCWGG | 2 cut(s) | 564, 1690 |
| BclI | TGATCA | 2 cut(s) | 327, 1771 |
| BcnI | CCSGG | 2 cut(s) | 722, 723 |
| BfaI | CTAG | 2 cut(s) | 303, 1742 |
| BisI | GCNGC | 1 cut(s) | 235 |
| BlsI | GCNGC | 1 cut(s) | 236 |
| Bme1390I | CCNGG | 4 cut(s) | 564, 722, 723, 1690 |
| Bme18I | GGWCC | 1 cut(s) | 566 |
| BmeT110I | CYCGRG | 1 cut(s) | 721 |
| BmgT120I | GGNCC | 2 cut(s) | 560, 566 |
| BmiI | GGNNCC | 1 cut(s) | 185 |
| BmrFI | CCNGG | 4 cut(s) | 564, 722, 723, 1690 |
| BmsI | GCATC | 6 cut(s) | 334, 556, 991, 1254, 1359, 1501 |
| BmtI | GCTAGC | 1 cut(s) | 306 |
| BpiI | GAAGAC | 3 cut(s) | 1166, 1559, 1767 |
| BpmI | CTGGAG | 2 cut(s) | 197, 650 |
| BpuMI | CCSGG | 2 cut(s) | 722, 723 |
| Bsa29I | ATCGAT | 1 cut(s) | 1080 |
| BsaAI | YACGTR | 1 cut(s) | 1631 |
| BsaJI | CCNNGG | 5 cut(s) | 464, 562, 721, 722, 1688 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 22, 52 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 557, 1736 |
| Bse3DI | GCAATG | 1 cut(s) | 127 |
| BseBI | CCWGG | 2 cut(s) | 564, 1690 |
| BseCI | ATCGAT | 1 cut(s) | 1080 |
| BseDI | CCNNGG | 5 cut(s) | 464, 562, 721, 722, 1688 |
| BseGI | GGATG | 9 cut(s) | 229, 376, 523, 547, 628, 717, 1006, 1588, 1687 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 557, 1736 |
| BseMI | GCAATG | 1 cut(s) | 127 |
| BseMII | CTCAG | 3 cut(s) | 854, 1259, 1539 |
| BseRI | GAGGAG | 1 cut(s) | 43 |
| BsgI | GTGCAG | 1 cut(s) | 1293 |
| Bsh1236I | CGCG | 1 cut(s) | 1564 |
| BshFI | GGCC | 4 cut(s) | 234, 561, 635, 1301 |
| BshVI | ATCGAT | 1 cut(s) | 1080 |
| BsiHKCI | CYCGRG | 1 cut(s) | 721 |
| BsiSI | CCGG | 1 cut(s) | 722 |
| BslFI | GGGAC | 4 cut(s) | 631, 739, 1454, 1650 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 557, 1736 |
| BsmFI | GGGAC | 4 cut(s) | 631, 739, 1454, 1650 |
| BsmI | GAATGC | 1 cut(s) | 493 |
| BsnI | GGCC | 4 cut(s) | 234, 561, 635, 1301 |
| BsoBI | CYCGRG | 1 cut(s) | 721 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1403 |
| Bsp143I | GATC | 3 cut(s) | 327, 1350, 1771 |
| BspACI | CCGC | 4 cut(s) | 235, 491, 608, 1144 |
| BspANI | GGCC | 4 cut(s) | 234, 561, 635, 1301 |
| BspCNI | CTCAG | 3 cut(s) | 855, 1260, 1540 |
| BspDI | ATCGAT | 1 cut(s) | 1080 |
| BspFNI | CGCG | 1 cut(s) | 1564 |
| BspLI | GGNNCC | 1 cut(s) | 185 |
| BspOI | GCTAGC | 1 cut(s) | 306 |
| BspPI | GGATC | 1 cut(s) | 1345 |
| BsrBI | CCGCTC | 1 cut(s) | 1144 |
| BsrDI | GCAATG | 1 cut(s) | 127 |
| BssECI | CCNNGG | 5 cut(s) | 464, 562, 721, 722, 1688 |
| BssMI | GATC | 3 cut(s) | 327, 1350, 1771 |
| BssT1I | CCWWGG | 1 cut(s) | 464 |
| Bst2UI | CCWGG | 2 cut(s) | 564, 1690 |
| Bst4CI | ACNGT | 1 cut(s) | 311 |
| Bst6I | CTCTTC | 5 cut(s) | 20, 427, 1232, 1404, 1729 |
| BstBAI | YACGTR | 1 cut(s) | 1631 |
| BstC8I | GCNNGC | 3 cut(s) | 188, 304, 1113 |
| BstDEI | CTNAG | 6 cut(s) | 705, 863, 1245, 1268, 1386, 1548 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 9 cut(s) | 229, 376, 523, 547, 628, 717, 1006, 1588, 1687 |
| BstFNI | CGCG | 1 cut(s) | 1564 |
| BstHHI | GCGC | 1 cut(s) | 1564 |
| BstKTI | GATC | 3 cut(s) | 330, 1353, 1774 |
| BstMBI | GATC | 3 cut(s) | 327, 1350, 1771 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 299, 1121, 1141 |
| BstNI | CCWGG | 2 cut(s) | 564, 1690 |
| BstNSI | RCATGY | 1 cut(s) | 1139 |
| BstSCI | CCNGG | 4 cut(s) | 562, 720, 721, 1688 |
| BstSNI | TACGTA | 1 cut(s) | 1631 |
| BstUI | CGCG | 1 cut(s) | 1564 |
| BstV2I | GAAGAC | 3 cut(s) | 1166, 1559, 1767 |
| Bsu15I | ATCGAT | 1 cut(s) | 1080 |
| BsuRI | GGCC | 4 cut(s) | 234, 561, 635, 1301 |
| BsuTUI | ATCGAT | 1 cut(s) | 1080 |
| BtsCI | GGATG | 9 cut(s) | 229, 376, 523, 547, 628, 717, 1006, 1588, 1687 |
| BtsI | GCAGTG | 1 cut(s) | 1281 |
| BtsIMutI | CAGTG | 1 cut(s) | 1281 |
| Cac8I | GCNNGC | 3 cut(s) | 188, 304, 1113 |
| CfoI | GCGC | 1 cut(s) | 1564 |
| Cfr13I | GGNCC | 2 cut(s) | 560, 566 |
| Cfr9I | CCCGGG | 1 cut(s) | 721 |
| ClaI | ATCGAT | 1 cut(s) | 1080 |
| CseI | GACGC | 2 cut(s) | 736, 1553 |
| Csp6I | GTAC | 2 cut(s) | 81, 159 |
| CviAII | CATG | 6 cut(s) | 364, 826, 911, 1136, 1157, 1437 |
| CviQI | GTAC | 2 cut(s) | 81, 159 |
| DdeI | CTNAG | 6 cut(s) | 705, 863, 1245, 1268, 1386, 1548 |
| DpnI | GATC | 3 cut(s) | 329, 1352, 1773 |
| DpnII | GATC | 3 cut(s) | 327, 1350, 1771 |
| DraI | TTTAAA | 1 cut(s) | 816 |
| Eam1104I | CTCTTC | 5 cut(s) | 20, 427, 1232, 1404, 1729 |
| EarI | CTCTTC | 5 cut(s) | 20, 427, 1232, 1404, 1729 |
| Eco105I | TACGTA | 1 cut(s) | 1631 |
| Eco130I | CCWWGG | 1 cut(s) | 464 |
| Eco24I | GRGCYC | 1 cut(s) | 1403 |
| Eco32I | GATATC | 1 cut(s) | 510 |
| Eco47I | GGWCC | 1 cut(s) | 566 |
| Eco88I | CYCGRG | 1 cut(s) | 721 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 555 |
| EcoO109I | RGGNCCY | 1 cut(s) | 560 |
| EcoRII | CCWGG | 2 cut(s) | 562, 1688 |
| EcoRV | GATATC | 1 cut(s) | 510 |
| EcoT14I | CCWWGG | 1 cut(s) | 464 |
| EcoT22I | ATGCAT | 3 cut(s) | 549, 1374, 1494 |
| EcoT38I | GRGCYC | 1 cut(s) | 1403 |
| ErhI | CCWWGG | 1 cut(s) | 464 |
| FaeI | CATG | 6 cut(s) | 367, 829, 914, 1139, 1160, 1440 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 698, 730 |
| FaqI | GGGAC | 4 cut(s) | 631, 739, 1454, 1650 |
| FatI | CATG | 6 cut(s) | 363, 825, 910, 1135, 1156, 1436 |
| FauI | CCCGC | 1 cut(s) | 1137 |
| FauNDI | CATATG | 2 cut(s) | 838, 1324 |
| FbaI | TGATCA | 2 cut(s) | 327, 1771 |
| Fnu4HI | GCNGC | 1 cut(s) | 235 |
| FokI | GGATG | 9 cut(s) | 236, 383, 530, 534, 635, 704, 1013, 1595, 1694 |
| FriOI | GRGCYC | 1 cut(s) | 1403 |
| Fsp4HI | GCNGC | 1 cut(s) | 235 |
| FspBI | CTAG | 2 cut(s) | 303, 1742 |
| GlaI | GCGC | 1 cut(s) | 1563 |
| GluI | GCNGC | 1 cut(s) | 235 |
| GsuI | CTGGAG | 2 cut(s) | 197, 650 |
| HaeIII | GGCC | 4 cut(s) | 234, 561, 635, 1301 |
| HapII | CCGG | 1 cut(s) | 722 |
| HgaI | GACGC | 2 cut(s) | 736, 1553 |
| HhaI | GCGC | 1 cut(s) | 1564 |
| Hin1II | CATG | 6 cut(s) | 367, 829, 914, 1139, 1160, 1440 |
| Hin6I | GCGC | 1 cut(s) | 1562 |
| HinP1I | GCGC | 1 cut(s) | 1562 |
| HindIII | AAGCTT | 1 cut(s) | 1206 |
| HinfI | GANTC | 5 cut(s) | 667, 915, 968, 1550, 1693 |
| HpaII | CCGG | 1 cut(s) | 722 |
| HphI | GGTGA | 4 cut(s) | 212, 409, 466, 1069 |
| Hpy166II | GTNNAC | 4 cut(s) | 81, 417, 659, 1593 |
| Hpy188I | TCNGA | 8 cut(s) | 332, 675, 739, 864, 1053, 1221, 1293, 1350 |
| Hpy8I | GTNNAC | 4 cut(s) | 81, 417, 659, 1593 |
| Hpy99I | CGWCG | 2 cut(s) | 168, 786 |
| HpyAV | CCTTC | 6 cut(s) | 130, 139, 291, 309, 561, 724 |
| HpyCH4III | ACNGT | 1 cut(s) | 311 |
| HpyCH4IV | ACGT | 6 cut(s) | 456, 690, 798, 1095, 1228, 1630 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 299, 1121, 1141 |
| HpyF3I | CTNAG | 6 cut(s) | 705, 863, 1245, 1268, 1386, 1548 |
| HpySE526I | ACGT | 6 cut(s) | 456, 690, 798, 1095, 1228, 1630 |
| Hsp92II | CATG | 6 cut(s) | 367, 829, 914, 1139, 1160, 1440 |
| HspAI | GCGC | 1 cut(s) | 1562 |
| Ksp22I | TGATCA | 2 cut(s) | 327, 1771 |
| Kzo9I | GATC | 3 cut(s) | 327, 1350, 1771 |
| LmnI | GCTCC | 4 cut(s) | 183, 809, 1141, 1285 |
| LweI | GCATC | 6 cut(s) | 334, 556, 991, 1254, 1359, 1501 |
| MaeI | CTAG | 2 cut(s) | 303, 1742 |
| MaeII | ACGT | 6 cut(s) | 456, 690, 798, 1095, 1228, 1630 |
| MaeIII | GTNAC | 6 cut(s) | 38, 452, 472, 691, 1551, 1609 |
| MalI | GATC | 3 cut(s) | 329, 1352, 1773 |
| MbiI | CCGCTC | 1 cut(s) | 1144 |
| MboI | GATC | 3 cut(s) | 327, 1350, 1771 |
| MhlI | GDGCHC | 1 cut(s) | 1403 |
| MlyI | GAGTC | 2 cut(s) | 661, 1559 |
| MmeI | TCCRAC | 2 cut(s) | 455, 1508 |
| Mph1103I | ATGCAT | 3 cut(s) | 549, 1374, 1494 |
| MseI | TTAA | 7 cut(s) | 206, 536, 678, 815, 1013, 1296, 1500 |
| MslI | CAYNNNNRTG | 2 cut(s) | 137, 932 |
| MspA1I | CMGCKG | 1 cut(s) | 190 |
| MspI | CCGG | 1 cut(s) | 722 |
| MspR9I | CCNGG | 4 cut(s) | 564, 722, 723, 1690 |
| Mva1269I | GAATGC | 1 cut(s) | 493 |
| MvaI | CCWGG | 2 cut(s) | 564, 1690 |
| MvnI | CGCG | 1 cut(s) | 1564 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 299, 1121, 1141 |
| NciI | CCSGG | 2 cut(s) | 722, 723 |
| NdeI | CATATG | 2 cut(s) | 838, 1324 |
| NdeII | GATC | 3 cut(s) | 327, 1350, 1771 |
| NheI | GCTAGC | 1 cut(s) | 302 |
| NlaIII | CATG | 6 cut(s) | 367, 829, 914, 1139, 1160, 1440 |
| NlaIV | GGNNCC | 1 cut(s) | 185 |
| NmuCI | GTSAC | 4 cut(s) | 38, 452, 472, 1551 |
| NsiI | ATGCAT | 3 cut(s) | 549, 1374, 1494 |
| NspI | RCATGY | 1 cut(s) | 1139 |
| OliI | CACNNNNGTG | 2 cut(s) | 137, 932 |
| PctI | GAATGC | 1 cut(s) | 493 |
| PfeI | GAWTC | 3 cut(s) | 915, 968, 1693 |
| PkrI | GCNGC | 1 cut(s) | 236 |
| PleI | GAGTC | 2 cut(s) | 661, 1558 |
| PpsI | GAGTC | 2 cut(s) | 661, 1558 |
| Ppu21I | YACGTR | 1 cut(s) | 1631 |
| PshBI | ATTAAT | 1 cut(s) | 678 |
| Psp1406I | AACGTT | 1 cut(s) | 690 |
| Psp6I | CCWGG | 2 cut(s) | 562, 1688 |
| PspGI | CCWGG | 2 cut(s) | 562, 1688 |
| PspN4I | GGNNCC | 1 cut(s) | 185 |
| PspPI | GGNCC | 2 cut(s) | 560, 566 |
| PvuII | CAGCTG | 1 cut(s) | 190 |
| RsaI | GTAC | 2 cut(s) | 82, 160 |
| RsaNI | GTAC | 2 cut(s) | 81, 159 |
| RseI | CAYNNNNRTG | 2 cut(s) | 137, 932 |
| SaqAI | TTAA | 7 cut(s) | 206, 536, 678, 815, 1013, 1296, 1500 |
| SatI | GCNGC | 1 cut(s) | 235 |
| Sau3AI | GATC | 3 cut(s) | 327, 1350, 1771 |
| Sau96I | GGNCC | 2 cut(s) | 560, 566 |
| SchI | GAGTC | 2 cut(s) | 661, 1559 |
| ScrFI | CCNGG | 4 cut(s) | 564, 722, 723, 1690 |
| SduI | GDGCHC | 1 cut(s) | 1403 |
| SfaNI | GCATC | 6 cut(s) | 334, 556, 991, 1254, 1359, 1501 |
| SinI | GGWCC | 1 cut(s) | 566 |
| SmaI | CCCGGG | 1 cut(s) | 723 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 137, 932 |
| SnaBI | TACGTA | 1 cut(s) | 1631 |
| SsiI | CCGC | 4 cut(s) | 235, 491, 608, 1144 |
| SspI | AATATT | 1 cut(s) | 1166 |
| SspMI | CTAG | 2 cut(s) | 303, 1742 |
| StyD4I | CCNGG | 4 cut(s) | 562, 720, 721, 1688 |
| StyI | CCWWGG | 1 cut(s) | 464 |
| TaaI | ACNGT | 1 cut(s) | 311 |
| TaiI | ACGT | 6 cut(s) | 459, 693, 801, 1098, 1231, 1633 |
| TaqI | TCGA | 4 cut(s) | 313, 406, 1080, 1758 |
| TatI | WGTACW | 1 cut(s) | 158 |
| TauI | GCSGC | 1 cut(s) | 237 |
| TfiI | GAWTC | 3 cut(s) | 915, 968, 1693 |
| Tru1I | TTAA | 7 cut(s) | 206, 536, 678, 815, 1013, 1296, 1500 |
| Tru9I | TTAA | 7 cut(s) | 206, 536, 678, 815, 1013, 1296, 1500 |
| TscAI | CASTG | 1 cut(s) | 1281 |
| TseFI | GTSAC | 4 cut(s) | 38, 452, 472, 1551 |
| Tsp45I | GTSAC | 4 cut(s) | 38, 452, 472, 1551 |
| TspDTI | ATGAA | 9 cut(s) | 34, 384, 515, 534, 637, 706, 960, 1239, 1425 |
| TspGWI | ACGGA | 3 cut(s) | 635, 679, 1217 |
| TspMI | CCCGGG | 1 cut(s) | 721 |
| TspRI | CASTG | 1 cut(s) | 1281 |
| VpaK11BI | GGWCC | 1 cut(s) | 566 |
| VspI | ATTAAT | 1 cut(s) | 678 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 555 |
| XapI | RAATTY | 2 cut(s) | 194, 322 |
| XbaI | TCTAGA | 1 cut(s) | 1741 |
| XceI | RCATGY | 1 cut(s) | 1139 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 194, 1655 |
| XmaI | CCCGGG | 1 cut(s) | 721 |
| XspI | CTAG | 2 cut(s) | 303, 1742 |
| Zsp2I | ATGCAT | 3 cut(s) | 549, 1374, 1494 |