Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 129 |
| Acc36I | ACCTGC | 1 cut(s) | 998 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 924 |
| AciI | CCGC | 2 cut(s) | 464, 543 |
| AclWI | GGATC | 3 cut(s) | 278, 485, 713 |
| AcsI | RAATTY | 1 cut(s) | 123 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AfaI | GTAC | 4 cut(s) | 228, 637, 756, 1188 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 841, 924, 1007 |
| AgsI | TTSAA | 7 cut(s) | 31, 441, 683, 914, 941, 1127, 1234 |
| AjnI | CCWGG | 3 cut(s) | 194, 275, 977 |
| Alw21I | GWGCWC | 2 cut(s) | 266, 304 |
| Alw26I | GTCTC | 3 cut(s) | 653, 1077, 1214 |
| AlwI | GGATC | 3 cut(s) | 278, 485, 713 |
| ApoI | RAATTY | 1 cut(s) | 123 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1213, 1245 |
| AseI | ATTAAT | 1 cut(s) | 704 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 432 |
| AsuC2I | CCSGG | 1 cut(s) | 1142 |
| AsuHPI | GGTGA | 1 cut(s) | 911 |
| BanII | GRGCYC | 2 cut(s) | 266, 304 |
| BbsI | GAAGAC | 2 cut(s) | 99, 879 |
| Bbv12I | GWGCWC | 2 cut(s) | 266, 304 |
| BccI | CCATC | 5 cut(s) | 156, 185, 313, 954, 1009 |
| BceAI | ACGGC | 1 cut(s) | 79 |
| BciT130I | CCWGG | 3 cut(s) | 196, 277, 979 |
| BcnI | CCSGG | 1 cut(s) | 1142 |
| BcoDI | GTCTC | 3 cut(s) | 653, 1077, 1214 |
| BfaI | CTAG | 3 cut(s) | 351, 836, 1202 |
| BfmI | CTRYAG | 1 cut(s) | 891 |
| BfuAI | ACCTGC | 1 cut(s) | 998 |
| Bme1390I | CCNGG | 4 cut(s) | 196, 277, 979, 1142 |
| BmiI | GGNNCC | 1 cut(s) | 1267 |
| BmrFI | CCNGG | 4 cut(s) | 196, 277, 979, 1142 |
| BmsI | GCATC | 4 cut(s) | 154, 221, 613, 640 |
| BpiI | GAAGAC | 2 cut(s) | 99, 879 |
| BpmI | CTGGAG | 3 cut(s) | 153, 217, 298 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 677 |
| BpuMI | CCSGG | 1 cut(s) | 1142 |
| BsaJI | CCNNGG | 3 cut(s) | 57, 287, 1140 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 841, 924, 1007 |
| Bse1I | ACTGG | 1 cut(s) | 44 |
| BseBI | CCWGG | 3 cut(s) | 196, 277, 979 |
| BseDI | CCNNGG | 3 cut(s) | 57, 287, 1140 |
| BseGI | GGATG | 2 cut(s) | 169, 655 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 841, 924, 1007 |
| BseMII | CTCAG | 1 cut(s) | 1101 |
| BseNI | ACTGG | 1 cut(s) | 44 |
| BseYI | CCCAGC | 2 cut(s) | 8, 257 |
| BsiHKAI | GWGCWC | 2 cut(s) | 266, 304 |
| BsiSI | CCGG | 1 cut(s) | 1142 |
| BslFI | GGGAC | 1 cut(s) | 976 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 841, 924, 1007 |
| BsmAI | GTCTC | 3 cut(s) | 653, 1077, 1214 |
| BsmFI | GGGAC | 1 cut(s) | 976 |
| BsmI | GAATGC | 3 cut(s) | 243, 689, 1037 |
| Bsp1286I | GDGCHC | 2 cut(s) | 266, 304 |
| Bsp1407I | TGTACA | 1 cut(s) | 754 |
| Bsp143I | GATC | 3 cut(s) | 283, 490, 718 |
| Bsp19I | CCATGG | 1 cut(s) | 57 |
| BspACI | CCGC | 2 cut(s) | 464, 543 |
| BspCNI | CTCAG | 1 cut(s) | 1100 |
| BspHI | TCATGA | 1 cut(s) | 931 |
| BspLI | GGNNCC | 1 cut(s) | 1267 |
| BspMI | ACCTGC | 1 cut(s) | 998 |
| BspPI | GGATC | 3 cut(s) | 278, 485, 713 |
| BsrGI | TGTACA | 1 cut(s) | 754 |
| BsrI | ACTGG | 1 cut(s) | 44 |
| BssECI | CCNNGG | 3 cut(s) | 57, 287, 1140 |
| BssMI | GATC | 3 cut(s) | 283, 490, 718 |
| BssT1I | CCWWGG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 3 cut(s) | 196, 277, 979 |
| Bst4CI | ACNGT | 2 cut(s) | 895, 1034 |
| Bst6I | CTCTTC | 1 cut(s) | 319 |
| BstAUI | TGTACA | 1 cut(s) | 754 |
| BstC8I | GCNNGC | 1 cut(s) | 525 |
| BstDEI | CTNAG | 3 cut(s) | 696, 1087, 1237 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 287 |
| BstF5I | GGATG | 2 cut(s) | 169, 655 |
| BstKTI | GATC | 3 cut(s) | 286, 493, 721 |
| BstMAI | GTCTC | 3 cut(s) | 653, 1077, 1214 |
| BstMBI | GATC | 3 cut(s) | 283, 490, 718 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 572, 684 |
| BstNI | CCWGG | 3 cut(s) | 196, 277, 979 |
| BstNSI | RCATGY | 1 cut(s) | 1114 |
| BstSCI | CCNGG | 4 cut(s) | 194, 275, 977, 1140 |
| BstSFI | CTRYAG | 1 cut(s) | 891 |
| BstV2I | GAAGAC | 2 cut(s) | 99, 879 |
| BtgI | CCRYGG | 2 cut(s) | 57, 287 |
| BtgZI | GCGATG | 1 cut(s) | 163 |
| BtsCI | GGATG | 2 cut(s) | 169, 655 |
| BveI | ACCTGC | 1 cut(s) | 998 |
| Cac8I | GCNNGC | 1 cut(s) | 525 |
| CciI | TCATGA | 1 cut(s) | 931 |
| Csp6I | GTAC | 4 cut(s) | 227, 636, 755, 1187 |
| CviAII | CATG | 5 cut(s) | 58, 611, 924, 932, 1111 |
| CviQI | GTAC | 4 cut(s) | 227, 636, 755, 1187 |
| DdeI | CTNAG | 3 cut(s) | 696, 1087, 1237 |
| DpnI | GATC | 3 cut(s) | 285, 492, 720 |
| DpnII | GATC | 3 cut(s) | 283, 490, 718 |
| DraI | TTTAAA | 1 cut(s) | 772 |
| Eam1104I | CTCTTC | 1 cut(s) | 319 |
| EarI | CTCTTC | 1 cut(s) | 319 |
| Ecl136II | GAGCTC | 2 cut(s) | 264, 302 |
| Eco130I | CCWWGG | 1 cut(s) | 57 |
| Eco24I | GRGCYC | 2 cut(s) | 266, 304 |
| Eco53kI | GAGCTC | 2 cut(s) | 264, 302 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| EcoICRI | GAGCTC | 2 cut(s) | 264, 302 |
| EcoRII | CCWGG | 3 cut(s) | 194, 275, 977 |
| EcoT14I | CCWWGG | 1 cut(s) | 57 |
| EcoT22I | ATGCAT | 1 cut(s) | 925 |
| EcoT38I | GRGCYC | 2 cut(s) | 266, 304 |
| ErhI | CCWWGG | 1 cut(s) | 57 |
| FaeI | CATG | 5 cut(s) | 61, 614, 927, 935, 1114 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 420, 452 |
| FaqI | GGGAC | 1 cut(s) | 976 |
| FatI | CATG | 5 cut(s) | 57, 610, 923, 931, 1110 |
| FauNDI | CATATG | 1 cut(s) | 1056 |
| FokI | GGATG | 2 cut(s) | 176, 662 |
| FriOI | GRGCYC | 2 cut(s) | 266, 304 |
| FspBI | CTAG | 3 cut(s) | 351, 836, 1202 |
| GsaI | CCCAGC | 2 cut(s) | 12, 261 |
| GsuI | CTGGAG | 3 cut(s) | 153, 217, 298 |
| HapII | CCGG | 1 cut(s) | 1142 |
| Hin1II | CATG | 5 cut(s) | 61, 614, 927, 935, 1114 |
| HincII | GTYRAC | 1 cut(s) | 1252 |
| HindII | GTYRAC | 1 cut(s) | 1252 |
| HindIII | AAGCTT | 2 cut(s) | 564, 824 |
| HinfI | GANTC | 7 cut(s) | 173, 292, 347, 727, 1085, 1226, 1290 |
| HpaII | CCGG | 1 cut(s) | 1142 |
| HphI | GGTGA | 1 cut(s) | 911 |
| Hpy166II | GTNNAC | 2 cut(s) | 1135, 1252 |
| Hpy188I | TCNGA | 3 cut(s) | 649, 1090, 1295 |
| Hpy188III | TCNNGA | 4 cut(s) | 52, 170, 351, 932 |
| Hpy8I | GTNNAC | 2 cut(s) | 1135, 1252 |
| HpyAV | CCTTC | 7 cut(s) | 195, 211, 583, 700, 774, 822, 1085 |
| HpyCH4III | ACNGT | 2 cut(s) | 895, 1034 |
| HpyCH4IV | ACGT | 1 cut(s) | 68 |
| HpyCH4V | TGCA | 6 cut(s) | 119, 212, 604, 653, 923, 1037 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 572, 684 |
| HpyF3I | CTNAG | 3 cut(s) | 696, 1087, 1237 |
| HpySE526I | ACGT | 1 cut(s) | 68 |
| Hsp92II | CATG | 5 cut(s) | 61, 614, 927, 935, 1114 |
| Kzo9I | GATC | 3 cut(s) | 283, 490, 718 |
| LmnI | GCTCC | 5 cut(s) | 172, 187, 261, 269, 307 |
| LweI | GCATC | 4 cut(s) | 154, 221, 613, 640 |
| MaeI | CTAG | 3 cut(s) | 351, 836, 1202 |
| MaeII | ACGT | 1 cut(s) | 68 |
| MaeIII | GTNAC | 1 cut(s) | 452 |
| MalI | GATC | 3 cut(s) | 285, 492, 720 |
| MboI | GATC | 3 cut(s) | 283, 490, 718 |
| MboII | GAAGA | 4 cut(s) | 99, 336, 431, 879 |
| MfeI | CAATTG | 1 cut(s) | 80 |
| MhlI | GDGCHC | 2 cut(s) | 266, 304 |
| MluCI | AATT | 9 cut(s) | 80, 123, 341, 379, 441, 705, 758, 941, 1024 |
| MlyI | GAGTC | 3 cut(s) | 182, 1079, 1284 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 7 cut(s) | 320, 508, 703, 752, 1008, 1147, 1161 |
| Mph1103I | ATGCAT | 1 cut(s) | 925 |
| MroXI | GAANNNNTTC | 1 cut(s) | 432 |
| MseI | TTAA | 7 cut(s) | 231, 332, 378, 399, 615, 704, 771 |
| MslI | CAYNNNNRTG | 3 cut(s) | 609, 673, 1059 |
| MspA1I | CMGCKG | 1 cut(s) | 464 |
| MspI | CCGG | 1 cut(s) | 1142 |
| MspR9I | CCNGG | 4 cut(s) | 196, 277, 979, 1142 |
| MunI | CAATTG | 1 cut(s) | 80 |
| Mva1269I | GAATGC | 3 cut(s) | 243, 689, 1037 |
| MvaI | CCWGG | 3 cut(s) | 196, 277, 979 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 572, 684 |
| NciI | CCSGG | 1 cut(s) | 1142 |
| NcoI | CCATGG | 1 cut(s) | 57 |
| NdeI | CATATG | 1 cut(s) | 1056 |
| NdeII | GATC | 3 cut(s) | 283, 490, 718 |
| NlaIII | CATG | 5 cut(s) | 61, 614, 927, 935, 1114 |
| NlaIV | GGNNCC | 1 cut(s) | 1267 |
| NmuCI | GTSAC | 1 cut(s) | 452 |
| NsiI | ATGCAT | 1 cut(s) | 925 |
| NspI | RCATGY | 1 cut(s) | 1114 |
| PagI | TCATGA | 1 cut(s) | 931 |
| PctI | GAATGC | 3 cut(s) | 243, 689, 1037 |
| PdmI | GAANNNNTTC | 1 cut(s) | 432 |
| PfeI | GAWTC | 4 cut(s) | 292, 347, 727, 1226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 924 |
| PfoI | TCCNGGA | 2 cut(s) | 194, 977 |
| PleI | GAGTC | 3 cut(s) | 181, 1079, 1284 |
| PpsI | GAGTC | 3 cut(s) | 181, 1079, 1284 |
| PshBI | ATTAAT | 1 cut(s) | 704 |
| PsiI | TTATAA | 1 cut(s) | 129 |
| Psp124BI | GAGCTC | 2 cut(s) | 266, 304 |
| Psp6I | CCWGG | 3 cut(s) | 194, 275, 977 |
| PspFI | CCCAGC | 2 cut(s) | 8, 257 |
| PspGI | CCWGG | 3 cut(s) | 194, 275, 977 |
| PspN4I | GGNNCC | 1 cut(s) | 1267 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 628, 660 |
| RsaI | GTAC | 4 cut(s) | 228, 637, 756, 1188 |
| RsaNI | GTAC | 4 cut(s) | 227, 636, 755, 1187 |
| RseI | CAYNNNNRTG | 3 cut(s) | 609, 673, 1059 |
| SacI | GAGCTC | 2 cut(s) | 266, 304 |
| SaqAI | TTAA | 7 cut(s) | 231, 332, 378, 399, 615, 704, 771 |
| Sau3AI | GATC | 3 cut(s) | 283, 490, 718 |
| SchI | GAGTC | 3 cut(s) | 182, 1079, 1284 |
| ScrFI | CCNGG | 4 cut(s) | 196, 277, 979, 1142 |
| SduI | GDGCHC | 2 cut(s) | 266, 304 |
| SfaNI | GCATC | 4 cut(s) | 154, 221, 613, 640 |
| SfcI | CTRYAG | 1 cut(s) | 891 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 609, 673, 1059 |
| SmlI | CTYRAG | 2 cut(s) | 50, 656 |
| SmoI | CTYRAG | 2 cut(s) | 50, 656 |
| Sse9I | AATT | 9 cut(s) | 80, 123, 341, 379, 441, 705, 758, 941, 1024 |
| SsiI | CCGC | 2 cut(s) | 464, 543 |
| SspI | AATATT | 1 cut(s) | 532 |
| SspMI | CTAG | 3 cut(s) | 351, 836, 1202 |
| SstI | GAGCTC | 2 cut(s) | 266, 304 |
| StyD4I | CCNGG | 4 cut(s) | 194, 275, 977, 1140 |
| StyI | CCWWGG | 1 cut(s) | 57 |
| TaaI | ACNGT | 2 cut(s) | 895, 1034 |
| TaiI | ACGT | 1 cut(s) | 71 |
| TaqI | TCGA | 2 cut(s) | 136, 215 |
| TasI | AATT | 9 cut(s) | 80, 123, 341, 379, 441, 705, 758, 941, 1024 |
| TatI | WGTACW | 2 cut(s) | 635, 754 |
| TfiI | GAWTC | 4 cut(s) | 292, 347, 727, 1226 |
| Tru1I | TTAA | 7 cut(s) | 231, 332, 378, 399, 615, 704, 771 |
| Tru9I | TTAA | 7 cut(s) | 231, 332, 378, 399, 615, 704, 771 |
| TseFI | GTSAC | 1 cut(s) | 452 |
| Tsp45I | GTSAC | 1 cut(s) | 452 |
| TspDTI | ATGAA | 4 cut(s) | 177, 355, 719, 920 |
| TspGWI | ACGGA | 2 cut(s) | 93, 276 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 924 |
| VspI | ATTAAT | 1 cut(s) | 704 |
| XapI | RAATTY | 1 cut(s) | 123 |
| XbaI | TCTAGA | 1 cut(s) | 350 |
| XceI | RCATGY | 1 cut(s) | 1114 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1008 |
| XmnI | GAANNNNTTC | 1 cut(s) | 432 |
| XspI | CTAG | 3 cut(s) | 351, 836, 1202 |
| Zsp2I | ATGCAT | 1 cut(s) | 925 |