Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 108 |
| AccB1I | GGYRCC | 2 cut(s) | 108, 592 |
| AccI | GTMKAC | 1 cut(s) | 674 |
| AciI | CCGC | 2 cut(s) | 360, 489 |
| AclWI | GGATC | 2 cut(s) | 256, 269 |
| AcsI | RAATTY | 1 cut(s) | 576 |
| AfaI | GTAC | 4 cut(s) | 110, 210, 405, 1089 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 495, 1106 |
| AflII | CTTAAG | 1 cut(s) | 848 |
| AflIII | ACRYGT | 1 cut(s) | 912 |
| AgsI | TTSAA | 4 cut(s) | 314, 817, 1147, 1173 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 154 |
| AjnI | CCWGG | 1 cut(s) | 543 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 126, 158 |
| AluBI | AGCT | 8 cut(s) | 94, 565, 871, 960, 1008, 1049, 1083, 1151 |
| AluI | AGCT | 8 cut(s) | 94, 565, 871, 960, 1008, 1049, 1083, 1151 |
| Alw26I | GTCTC | 2 cut(s) | 141, 162 |
| AlwI | GGATC | 2 cut(s) | 256, 269 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 983 |
| Ama87I | CYCGRG | 2 cut(s) | 648, 1050 |
| AoxI | GGCC | 3 cut(s) | 188, 1028, 1220 |
| ApeKI | GCWGC | 3 cut(s) | 362, 1046, 1151 |
| ApoI | RAATTY | 1 cut(s) | 576 |
| Asp718I | GGTACC | 1 cut(s) | 108 |
| AspLEI | GCGC | 1 cut(s) | 772 |
| AsuC2I | CCSGG | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 2 cut(s) | 375, 692 |
| AsuNHI | GCTAGC | 1 cut(s) | 973 |
| AvaI | CYCGRG | 2 cut(s) | 648, 1050 |
| BaeGI | GKGCMC | 1 cut(s) | 746 |
| BamHI | GGATCC | 1 cut(s) | 261 |
| BanI | GGYRCC | 2 cut(s) | 108, 592 |
| BanII | GRGCYC | 1 cut(s) | 458 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 458, 490 |
| BbsI | GAAGAC | 1 cut(s) | 723 |
| BbvCI | CCTCAGC | 1 cut(s) | 1184 |
| BbvI | GCAGC | 3 cut(s) | 349, 1058, 1138 |
| BccI | CCATC | 5 cut(s) | 48, 374, 383, 871, 1218 |
| BciT130I | CCWGG | 1 cut(s) | 545 |
| BciVI | GTATCC | 1 cut(s) | 348 |
| BclI | TGATCA | 1 cut(s) | 832 |
| BcnI | CCSGG | 1 cut(s) | 106 |
| BcoDI | GTCTC | 2 cut(s) | 141, 162 |
| BfaI | CTAG | 4 cut(s) | 284, 518, 804, 974 |
| BfrI | CTTAAG | 1 cut(s) | 848 |
| BfuI | GTATCC | 1 cut(s) | 348 |
| BisI | GCNGC | 3 cut(s) | 363, 1047, 1152 |
| BlsI | GCNGC | 3 cut(s) | 364, 1048, 1153 |
| BmcAI | AGTACT | 1 cut(s) | 405 |
| Bme1390I | CCNGG | 2 cut(s) | 106, 545 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 154 |
| BmeT110I | CYCGRG | 2 cut(s) | 648, 1050 |
| BmiI | GGNNCC | 4 cut(s) | 110, 263, 455, 594 |
| BmrFI | CCNGG | 2 cut(s) | 106, 545 |
| BmrI | ACTGGG | 1 cut(s) | 308 |
| BmsI | GCATC | 4 cut(s) | 183, 624, 816, 853 |
| BmtI | GCTAGC | 1 cut(s) | 977 |
| BmuI | ACTGGG | 1 cut(s) | 308 |
| BpiI | GAAGAC | 1 cut(s) | 723 |
| BpmI | CTGGAG | 2 cut(s) | 322, 640 |
| Bpu10I | CCTNAGC | 2 cut(s) | 659, 1184 |
| BpuEI | CTTGAG | 1 cut(s) | 219 |
| BpuMI | CCSGG | 1 cut(s) | 106 |
| BsaJI | CCNNGG | 2 cut(s) | 543, 544 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 208, 238 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 495, 1106 |
| Bse118I | RCCGGY | 1 cut(s) | 1042 |
| Bse1I | ACTGG | 3 cut(s) | 191, 303, 682 |
| Bse3DI | GCAATG | 1 cut(s) | 1064 |
| BseBI | CCWGG | 1 cut(s) | 545 |
| BseDI | CCNNGG | 2 cut(s) | 543, 544 |
| BseGI | GGATG | 5 cut(s) | 59, 174, 366, 706, 831 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 495, 1106 |
| BseMI | GCAATG | 1 cut(s) | 1064 |
| BseMII | CTCAG | 2 cut(s) | 1115, 1198 |
| BseNI | ACTGG | 3 cut(s) | 191, 303, 682 |
| BseSI | GKGCMC | 1 cut(s) | 746 |
| BseXI | GCAGC | 3 cut(s) | 349, 1058, 1138 |
| BsgI | GTGCAG | 1 cut(s) | 708 |
| BshFI | GGCC | 3 cut(s) | 190, 1030, 1222 |
| BshNI | GGYRCC | 2 cut(s) | 108, 592 |
| BsiHKCI | CYCGRG | 2 cut(s) | 648, 1050 |
| BsiSI | CCGG | 2 cut(s) | 106, 1043 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 495, 1106 |
| BsmAI | GTCTC | 2 cut(s) | 141, 162 |
| BsmBI | CGTCTC | 1 cut(s) | 162 |
| BsnI | GGCC | 3 cut(s) | 190, 1030, 1222 |
| BsoBI | CYCGRG | 2 cut(s) | 648, 1050 |
| Bsp1286I | GDGCHC | 2 cut(s) | 458, 746 |
| Bsp143I | GATC | 3 cut(s) | 261, 832, 900 |
| BspACI | CCGC | 2 cut(s) | 360, 489 |
| BspANI | GGCC | 3 cut(s) | 190, 1030, 1222 |
| BspCNI | CTCAG | 2 cut(s) | 1116, 1197 |
| BspHI | TCATGA | 1 cut(s) | 873 |
| BspLI | GGNNCC | 4 cut(s) | 110, 263, 455, 594 |
| BspOI | GCTAGC | 1 cut(s) | 977 |
| BspPI | GGATC | 2 cut(s) | 256, 269 |
| BspT107I | GGYRCC | 2 cut(s) | 108, 592 |
| BspTI | CTTAAG | 1 cut(s) | 848 |
| BsrDI | GCAATG | 1 cut(s) | 1064 |
| BsrFI | RCCGGY | 1 cut(s) | 1042 |
| BsrI | ACTGG | 3 cut(s) | 191, 303, 682 |
| BssAI | RCCGGY | 1 cut(s) | 1042 |
| BssECI | CCNNGG | 2 cut(s) | 543, 544 |
| BssMI | GATC | 3 cut(s) | 261, 832, 900 |
| BssNAI | GTATAC | 1 cut(s) | 675 |
| Bst1107I | GTATAC | 1 cut(s) | 675 |
| Bst2UI | CCWGG | 1 cut(s) | 545 |
| Bst6I | CTCTTC | 1 cut(s) | 1016 |
| BstAFI | CTTAAG | 1 cut(s) | 848 |
| BstC8I | GCNNGC | 4 cut(s) | 531, 585, 628, 975 |
| BstDEI | CTNAG | 4 cut(s) | 419, 659, 1124, 1184 |
| BstEII | GGTNACC | 1 cut(s) | 680 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1104 |
| BstF5I | GGATG | 5 cut(s) | 59, 174, 366, 706, 831 |
| BstHHI | GCGC | 1 cut(s) | 772 |
| BstKTI | GATC | 3 cut(s) | 264, 835, 903 |
| BstMAI | GTCTC | 2 cut(s) | 141, 162 |
| BstMBI | GATC | 3 cut(s) | 261, 832, 900 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 371, 974, 1157 |
| BstNI | CCWGG | 1 cut(s) | 545 |
| BstNSI | RCATGY | 2 cut(s) | 916, 1197 |
| BstPI | GGTNACC | 1 cut(s) | 680 |
| BstSCI | CCNGG | 2 cut(s) | 104, 543 |
| BstSLI | GKGCMC | 1 cut(s) | 746 |
| BstV1I | GCAGC | 3 cut(s) | 349, 1058, 1138 |
| BstV2I | GAAGAC | 1 cut(s) | 723 |
| BstX2I | RGATCY | 1 cut(s) | 261 |
| BstYI | RGATCY | 1 cut(s) | 261 |
| BstZ17I | GTATAC | 1 cut(s) | 675 |
| BsuI | GTATCC | 1 cut(s) | 348 |
| BsuRI | GGCC | 3 cut(s) | 190, 1030, 1222 |
| BtsCI | GGATG | 5 cut(s) | 59, 174, 366, 706, 831 |
| BtsI | GCAGTG | 2 cut(s) | 720, 747 |
| BtsIMutI | CAGTG | 3 cut(s) | 296, 720, 747 |
| Cac8I | GCNNGC | 4 cut(s) | 531, 585, 628, 975 |
| CaiI | CAGNNNCTG | 1 cut(s) | 983 |
| CciI | TCATGA | 1 cut(s) | 873 |
| CfoI | GCGC | 1 cut(s) | 772 |
| Cfr10I | RCCGGY | 1 cut(s) | 1042 |
| Csp6I | GTAC | 4 cut(s) | 109, 209, 404, 1088 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 63, 98 |
| CviAII | CATG | 7 cut(s) | 371, 836, 874, 887, 913, 1103, 1194 |
| CviQI | GTAC | 4 cut(s) | 109, 209, 404, 1088 |
| DdeI | CTNAG | 4 cut(s) | 419, 659, 1124, 1184 |
| DpnI | GATC | 3 cut(s) | 263, 834, 902 |
| DpnII | GATC | 3 cut(s) | 261, 832, 900 |
| DraI | TTTAAA | 2 cut(s) | 10, 100 |
| DriI | GACNNNNNGTC | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 1 cut(s) | 1016 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 154 |
| EarI | CTCTTC | 1 cut(s) | 1016 |
| Eco147I | AGGCCT | 2 cut(s) | 1030, 1222 |
| Eco24I | GRGCYC | 1 cut(s) | 458 |
| Eco88I | CYCGRG | 2 cut(s) | 648, 1050 |
| Eco91I | GGTNACC | 1 cut(s) | 680 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1104 |
| EcoO65I | GGTNACC | 1 cut(s) | 680 |
| EcoRII | CCWGG | 1 cut(s) | 543 |
| EcoT22I | ATGCAT | 1 cut(s) | 617 |
| EcoT38I | GRGCYC | 1 cut(s) | 458 |
| Esp3I | CGTCTC | 1 cut(s) | 162 |
| FaeI | CATG | 7 cut(s) | 374, 839, 877, 890, 916, 1106, 1197 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 126, 158 |
| FatI | CATG | 7 cut(s) | 370, 835, 873, 886, 912, 1102, 1193 |
| FauI | CCCGC | 1 cut(s) | 367 |
| FauNDI | CATATG | 2 cut(s) | 712, 893 |
| FbaI | TGATCA | 1 cut(s) | 832 |
| FblI | GTMKAC | 1 cut(s) | 674 |
| Fnu4HI | GCNGC | 3 cut(s) | 363, 1047, 1152 |
| FokI | GGATG | 5 cut(s) | 66, 161, 353, 693, 838 |
| FriOI | GRGCYC | 1 cut(s) | 458 |
| Fsp4HI | GCNGC | 3 cut(s) | 363, 1047, 1152 |
| FspBI | CTAG | 4 cut(s) | 284, 518, 804, 974 |
| GlaI | GCGC | 1 cut(s) | 771 |
| GluI | GCNGC | 3 cut(s) | 363, 1047, 1152 |
| GsuI | CTGGAG | 2 cut(s) | 322, 640 |
| HaeIII | GGCC | 3 cut(s) | 190, 1030, 1222 |
| HapII | CCGG | 2 cut(s) | 106, 1043 |
| HhaI | GCGC | 1 cut(s) | 772 |
| Hin1II | CATG | 7 cut(s) | 374, 839, 877, 890, 916, 1106, 1197 |
| Hin6I | GCGC | 1 cut(s) | 770 |
| HinP1I | GCGC | 1 cut(s) | 770 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HindIII | AAGCTT | 1 cut(s) | 1081 |
| HinfI | GANTC | 3 cut(s) | 149, 335, 980 |
| HpaII | CCGG | 2 cut(s) | 106, 1043 |
| HphI | GGTGA | 2 cut(s) | 375, 692 |
| Hpy166II | GTNNAC | 3 cut(s) | 241, 675, 704 |
| Hpy188I | TCNGA | 3 cut(s) | 325, 940, 985 |
| Hpy188III | TCNNGA | 4 cut(s) | 560, 619, 874, 1036 |
| Hpy8I | GTNNAC | 3 cut(s) | 241, 675, 704 |
| HpyAV | CCTTC | 3 cut(s) | 180, 460, 1212 |
| HpyCH4V | TGCA | 5 cut(s) | 587, 615, 725, 844, 968 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 371, 974, 1157 |
| HpyF3I | CTNAG | 4 cut(s) | 419, 659, 1124, 1184 |
| Hsp92II | CATG | 7 cut(s) | 374, 839, 877, 890, 916, 1106, 1197 |
| HspAI | GCGC | 1 cut(s) | 770 |
| KpnI | GGTACC | 1 cut(s) | 112 |
| Ksp22I | TGATCA | 1 cut(s) | 832 |
| Kzo9I | GATC | 3 cut(s) | 261, 832, 900 |
| LmnI | GCTCC | 3 cut(s) | 216, 453, 562 |
| Lsp1109I | GCAGC | 3 cut(s) | 349, 1058, 1138 |
| LweI | GCATC | 4 cut(s) | 183, 624, 816, 853 |
| MaeI | CTAG | 4 cut(s) | 284, 518, 804, 974 |
| MaeIII | GTNAC | 3 cut(s) | 639, 680, 997 |
| MalI | GATC | 3 cut(s) | 263, 834, 902 |
| MboI | GATC | 3 cut(s) | 261, 832, 900 |
| MboII | GAAGA | 5 cut(s) | 370, 724, 728, 875, 1033 |
| MflI | RGATCY | 1 cut(s) | 261 |
| MhlI | GDGCHC | 2 cut(s) | 458, 746 |
| MluCI | AATT | 6 cut(s) | 118, 278, 330, 390, 576, 946 |
| MlyI | GAGTC | 3 cut(s) | 143, 329, 989 |
| MmeI | TCCRAC | 2 cut(s) | 93, 431 |
| Mph1103I | ATGCAT | 1 cut(s) | 617 |
| MseI | TTAA | 9 cut(s) | 9, 99, 180, 197, 329, 606, 780, 849, 1068 |
| MslI | CAYNNNNRTG | 2 cut(s) | 711, 1107 |
| MspA1I | CMGCKG | 1 cut(s) | 362 |
| MspCI | CTTAAG | 1 cut(s) | 848 |
| MspI | CCGG | 2 cut(s) | 106, 1043 |
| MspR9I | CCNGG | 2 cut(s) | 106, 545 |
| MvaI | CCWGG | 1 cut(s) | 545 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 371, 974, 1157 |
| NciI | CCSGG | 1 cut(s) | 106 |
| NdeI | CATATG | 2 cut(s) | 712, 893 |
| NdeII | GATC | 3 cut(s) | 261, 832, 900 |
| NheI | GCTAGC | 1 cut(s) | 973 |
| NlaIII | CATG | 7 cut(s) | 374, 839, 877, 890, 916, 1106, 1197 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 263, 455, 594 |
| NmuCI | GTSAC | 1 cut(s) | 680 |
| NsiI | ATGCAT | 1 cut(s) | 617 |
| NspI | RCATGY | 2 cut(s) | 916, 1197 |
| PaeR7I | CTCGAG | 1 cut(s) | 1050 |
| PagI | TCATGA | 1 cut(s) | 873 |
| PasI | CCCWGGG | 1 cut(s) | 544 |
| PceI | AGGCCT | 2 cut(s) | 1030, 1222 |
| PciI | ACATGT | 1 cut(s) | 912 |
| PkrI | GCNGC | 3 cut(s) | 364, 1048, 1153 |
| PleI | GAGTC | 3 cut(s) | 143, 329, 988 |
| PpsI | GAGTC | 3 cut(s) | 143, 329, 988 |
| PscI | ACATGT | 1 cut(s) | 912 |
| Psp6I | CCWGG | 1 cut(s) | 543 |
| PspEI | GGTNACC | 1 cut(s) | 680 |
| PspGI | CCWGG | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 263, 455, 594 |
| PspXI | VCTCGAGB | 1 cut(s) | 1050 |
| PstNI | CAGNNNCTG | 1 cut(s) | 983 |
| PsuI | RGATCY | 1 cut(s) | 261 |
| RsaI | GTAC | 4 cut(s) | 110, 210, 405, 1089 |
| RsaNI | GTAC | 4 cut(s) | 109, 209, 404, 1088 |
| RseI | CAYNNNNRTG | 2 cut(s) | 711, 1107 |
| SaqAI | TTAA | 9 cut(s) | 9, 99, 180, 197, 329, 606, 780, 849, 1068 |
| SatI | GCNGC | 3 cut(s) | 363, 1047, 1152 |
| Sau3AI | GATC | 3 cut(s) | 261, 832, 900 |
| ScaI | AGTACT | 1 cut(s) | 405 |
| SchI | GAGTC | 3 cut(s) | 143, 329, 989 |
| ScrFI | CCNGG | 2 cut(s) | 106, 545 |
| SduI | GDGCHC | 2 cut(s) | 458, 746 |
| SfaNI | GCATC | 4 cut(s) | 183, 624, 816, 853 |
| Sfr274I | CTCGAG | 1 cut(s) | 1050 |
| SlaI | CTCGAG | 1 cut(s) | 1050 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 711, 1107 |
| SmlI | CTYRAG | 3 cut(s) | 234, 848, 1050 |
| SmoI | CTYRAG | 3 cut(s) | 234, 848, 1050 |
| Sse9I | AATT | 6 cut(s) | 118, 278, 330, 390, 576, 946 |
| SseBI | AGGCCT | 2 cut(s) | 1030, 1222 |
| SsiI | CCGC | 2 cut(s) | 360, 489 |
| SspMI | CTAG | 4 cut(s) | 284, 518, 804, 974 |
| StuI | AGGCCT | 2 cut(s) | 1030, 1222 |
| StyD4I | CCNGG | 2 cut(s) | 104, 543 |
| TaqI | TCGA | 2 cut(s) | 1019, 1051 |
| TasI | AATT | 6 cut(s) | 118, 278, 330, 390, 576, 946 |
| TatI | WGTACW | 2 cut(s) | 208, 403 |
| Tru1I | TTAA | 9 cut(s) | 9, 99, 180, 197, 329, 606, 780, 849, 1068 |
| Tru9I | TTAA | 9 cut(s) | 9, 99, 180, 197, 329, 606, 780, 849, 1068 |
| TscAI | CASTG | 3 cut(s) | 303, 727, 754 |
| TseFI | GTSAC | 1 cut(s) | 680 |
| TseI | GCWGC | 3 cut(s) | 362, 1046, 1151 |
| Tsp45I | GTSAC | 1 cut(s) | 680 |
| TspDTI | ATGAA | 3 cut(s) | 278, 729, 875 |
| TspGWI | ACGGA | 1 cut(s) | 144 |
| TspRI | CASTG | 3 cut(s) | 303, 727, 754 |
| Vha464I | CTTAAG | 1 cut(s) | 848 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1104 |
| XapI | RAATTY | 1 cut(s) | 576 |
| XceI | RCATGY | 2 cut(s) | 916, 1197 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1100 |
| XhoI | CTCGAG | 1 cut(s) | 1050 |
| XmiI | GTMKAC | 1 cut(s) | 674 |
| XspI | CTAG | 4 cut(s) | 284, 518, 804, 974 |
| ZrmI | AGTACT | 1 cut(s) | 405 |
| Zsp2I | ATGCAT | 1 cut(s) | 617 |