Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sec61_beta | PF03911 | 39 - 63 | 4e-06 | Sec61beta family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 41 |
| AccB1I | GGYRCC | 1 cut(s) | 110 |
| AccIII | TCCGGA | 3 cut(s) | 77, 258, 286 |
| AciI | CCGC | 5 cut(s) | 63, 90, 96, 99, 245 |
| AclWI | GGATC | 5 cut(s) | 230, 269, 278, 281, 291 |
| AcsI | RAATTY | 1 cut(s) | 254 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AjiI | CACGTC | 1 cut(s) | 210 |
| AjnI | CCWGG | 1 cut(s) | 151 |
| AluBI | AGCT | 5 cut(s) | 20, 32, 75, 222, 250 |
| AluI | AGCT | 5 cut(s) | 20, 32, 75, 222, 250 |
| AlwI | GGATC | 5 cut(s) | 230, 269, 278, 281, 291 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| Aor13HI | TCCGGA | 3 cut(s) | 77, 258, 286 |
| ApeKI | GCWGC | 4 cut(s) | 20, 23, 42, 93 |
| ApoI | RAATTY | 1 cut(s) | 254 |
| AspLEI | GCGC | 1 cut(s) | 42 |
| BamHI | GGATCC | 1 cut(s) | 283 |
| BanI | GGYRCC | 1 cut(s) | 110 |
| BauI | CACGAG | 1 cut(s) | 9 |
| BbsI | GAAGAC | 1 cut(s) | 204 |
| BbvI | GCAGC | 4 cut(s) | 7, 10, 54, 105 |
| BceAI | ACGGC | 1 cut(s) | 30 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 174, 208 |
| BciT130I | CCWGG | 1 cut(s) | 153 |
| BglII | AGATCT | 1 cut(s) | 162 |
| BisI | GCNGC | 7 cut(s) | 21, 24, 43, 64, 91, 94, 97 |
| BlsI | GCNGC | 7 cut(s) | 22, 25, 44, 65, 92, 95, 98 |
| Bme1390I | CCNGG | 1 cut(s) | 153 |
| BmgBI | CACGTC | 1 cut(s) | 210 |
| BmiI | GGNNCC | 3 cut(s) | 6, 112, 285 |
| BmrFI | CCNGG | 1 cut(s) | 153 |
| BmsI | GCATC | 1 cut(s) | 194 |
| BpiI | GAAGAC | 1 cut(s) | 204 |
| BpmI | CTGGAG | 1 cut(s) | 55 |
| BsaWI | WCCGGW | 3 cut(s) | 77, 258, 286 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bse118I | RCCGGY | 1 cut(s) | 241 |
| BseAI | TCCGGA | 3 cut(s) | 77, 258, 286 |
| BseBI | CCWGG | 1 cut(s) | 153 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseXI | GCAGC | 4 cut(s) | 7, 10, 54, 105 |
| BshNI | GGYRCC | 1 cut(s) | 110 |
| BsiSI | CCGG | 5 cut(s) | 78, 114, 242, 259, 287 |
| BsmI | GAATGC | 1 cut(s) | 42 |
| Bsp13I | TCCGGA | 3 cut(s) | 77, 258, 286 |
| Bsp143I | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| BspACI | CCGC | 5 cut(s) | 63, 90, 96, 99, 245 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspEI | TCCGGA | 3 cut(s) | 77, 258, 286 |
| BspLI | GGNNCC | 3 cut(s) | 6, 112, 285 |
| BspPI | GGATC | 5 cut(s) | 230, 269, 278, 281, 291 |
| BspT107I | GGYRCC | 1 cut(s) | 110 |
| BsrFI | RCCGGY | 1 cut(s) | 241 |
| BssAI | RCCGGY | 1 cut(s) | 241 |
| BssMI | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| BssSI | CACGAG | 1 cut(s) | 9 |
| Bst2BI | CACGAG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 1 cut(s) | 153 |
| Bst4CI | ACNGT | 1 cut(s) | 175 |
| BstC8I | GCNNGC | 2 cut(s) | 183, 220 |
| BstDEI | CTNAG | 1 cut(s) | 128 |
| BstHHI | GCGC | 1 cut(s) | 42 |
| BstKTI | GATC | 5 cut(s) | 165, 238, 264, 276, 286 |
| BstMBI | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 29, 72, 81, 90, 96, 102 |
| BstNI | CCWGG | 1 cut(s) | 153 |
| BstSCI | CCNGG | 1 cut(s) | 151 |
| BstV1I | GCAGC | 4 cut(s) | 7, 10, 54, 105 |
| BstV2I | GAAGAC | 1 cut(s) | 204 |
| BstX2I | RGATCY | 3 cut(s) | 162, 261, 283 |
| BstYI | RGATCY | 3 cut(s) | 162, 261, 283 |
| BtrI | CACGTC | 1 cut(s) | 210 |
| BtsI | GCAGTG | 1 cut(s) | 197 |
| BtsIMutI | CAGTG | 1 cut(s) | 197 |
| Cac8I | GCNNGC | 2 cut(s) | 183, 220 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| CfoI | GCGC | 1 cut(s) | 42 |
| Cfr10I | RCCGGY | 1 cut(s) | 241 |
| CviAII | CATG | 2 cut(s) | 85, 178 |
| DdeI | CTNAG | 1 cut(s) | 128 |
| DpnI | GATC | 5 cut(s) | 164, 237, 263, 275, 285 |
| DpnII | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| EciI | GGCGGA | 1 cut(s) | 260 |
| EcoRII | CCWGG | 1 cut(s) | 151 |
| FaeI | CATG | 2 cut(s) | 88, 181 |
| FaiI | YATR | 3 cut(s) | 86, 125, 179 |
| FatI | CATG | 2 cut(s) | 84, 177 |
| Fnu4HI | GCNGC | 7 cut(s) | 21, 24, 43, 64, 91, 94, 97 |
| Fsp4HI | GCNGC | 7 cut(s) | 21, 24, 43, 64, 91, 94, 97 |
| FspI | TGCGCA | 1 cut(s) | 41 |
| GlaI | GCGC | 1 cut(s) | 41 |
| GluI | GCNGC | 7 cut(s) | 21, 24, 43, 64, 91, 94, 97 |
| GsuI | CTGGAG | 1 cut(s) | 55 |
| HapII | CCGG | 5 cut(s) | 78, 114, 242, 259, 287 |
| HhaI | GCGC | 1 cut(s) | 42 |
| Hin1II | CATG | 2 cut(s) | 88, 181 |
| Hin6I | GCGC | 1 cut(s) | 40 |
| HinP1I | GCGC | 1 cut(s) | 40 |
| HpaII | CCGG | 5 cut(s) | 78, 114, 242, 259, 287 |
| Hpy188III | TCNNGA | 4 cut(s) | 78, 259, 281, 287 |
| Hpy99I | CGWCG | 1 cut(s) | 51 |
| HpyCH4III | ACNGT | 1 cut(s) | 175 |
| HpyCH4IV | ACGT | 1 cut(s) | 209 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 29, 72, 81, 90, 96, 102 |
| HpyF3I | CTNAG | 1 cut(s) | 128 |
| HpySE526I | ACGT | 1 cut(s) | 209 |
| Hsp92II | CATG | 2 cut(s) | 88, 181 |
| HspAI | GCGC | 1 cut(s) | 40 |
| Kpn2I | TCCGGA | 3 cut(s) | 77, 258, 286 |
| Kzo9I | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| LmnI | GCTCC | 4 cut(s) | 10, 80, 154, 247 |
| Lsp1109I | GCAGC | 4 cut(s) | 7, 10, 54, 105 |
| LweI | GCATC | 1 cut(s) | 194 |
| MaeII | ACGT | 1 cut(s) | 209 |
| MaeIII | GTNAC | 1 cut(s) | 195 |
| MalI | GATC | 5 cut(s) | 164, 237, 263, 275, 285 |
| MboI | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| MboII | GAAGA | 2 cut(s) | 172, 204 |
| MflI | RGATCY | 3 cut(s) | 162, 261, 283 |
| MluCI | AATT | 1 cut(s) | 254 |
| MnlI | CCTC | 6 cut(s) | 18, 53, 74, 214, 238, 283 |
| MroI | TCCGGA | 3 cut(s) | 77, 258, 286 |
| MseI | TTAA | 2 cut(s) | 252, 266 |
| MslI | CAYNNNNRTG | 1 cut(s) | 176 |
| MspA1I | CMGCKG | 3 cut(s) | 20, 32, 96 |
| MspI | CCGG | 5 cut(s) | 78, 114, 242, 259, 287 |
| MspR9I | CCNGG | 1 cut(s) | 153 |
| Mva1269I | GAATGC | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 29, 72, 81, 90, 96, 102 |
| NdeII | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| NlaIII | CATG | 2 cut(s) | 88, 181 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 112, 285 |
| NmuCI | GTSAC | 1 cut(s) | 195 |
| NsbI | TGCGCA | 1 cut(s) | 41 |
| PctI | GAATGC | 1 cut(s) | 42 |
| PkrI | GCNGC | 7 cut(s) | 22, 25, 44, 65, 92, 95, 98 |
| Psp6I | CCWGG | 1 cut(s) | 151 |
| PspGI | CCWGG | 1 cut(s) | 151 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 112, 285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| PsuI | RGATCY | 3 cut(s) | 162, 261, 283 |
| PvuII | CAGCTG | 2 cut(s) | 20, 32 |
| RseI | CAYNNNNRTG | 1 cut(s) | 176 |
| SaqAI | TTAA | 2 cut(s) | 252, 266 |
| SatI | GCNGC | 7 cut(s) | 21, 24, 43, 64, 91, 94, 97 |
| Sau3AI | GATC | 5 cut(s) | 162, 235, 261, 273, 283 |
| ScrFI | CCNGG | 1 cut(s) | 153 |
| SetI | ASST | 9 cut(s) | 22, 34, 77, 134, 212, 224, 230, 252, 294 |
| SfaNI | GCATC | 1 cut(s) | 194 |
| SgrAI | CRCCGGYG | 1 cut(s) | 241 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 176 |
| Sse9I | AATT | 1 cut(s) | 254 |
| SsiI | CCGC | 5 cut(s) | 63, 90, 96, 99, 245 |
| StyD4I | CCNGG | 1 cut(s) | 151 |
| TaaI | ACNGT | 1 cut(s) | 175 |
| TaiI | ACGT | 1 cut(s) | 212 |
| TasI | AATT | 1 cut(s) | 254 |
| TauI | GCSGC | 3 cut(s) | 66, 93, 99 |
| Tru1I | TTAA | 2 cut(s) | 252, 266 |
| Tru9I | TTAA | 2 cut(s) | 252, 266 |
| TscAI | CASTG | 1 cut(s) | 204 |
| TseFI | GTSAC | 1 cut(s) | 195 |
| TseI | GCWGC | 4 cut(s) | 20, 23, 42, 93 |
| Tsp45I | GTSAC | 1 cut(s) | 195 |
| TspGWI | ACGGA | 1 cut(s) | 286 |
| TspRI | CASTG | 1 cut(s) | 204 |
| XapI | RAATTY | 1 cut(s) | 254 |