Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 51 - 484 | 4.8e-102 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1163 |
| Acc36I | ACCTGC | 1 cut(s) | 1163 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 179 |
| AccBSI | CCGCTC | 1 cut(s) | 216 |
| AccII | CGCG | 2 cut(s) | 757, 971 |
| AccIII | TCCGGA | 2 cut(s) | 125, 1282 |
| AciI | CCGC | 6 cut(s) | 152, 209, 214, 757, 969, 1382 |
| AclI | AACGTT | 1 cut(s) | 671 |
| AclWI | GGATC | 2 cut(s) | 62, 136 |
| AcoI | YGGCCR | 4 cut(s) | 306, 547, 1017, 1461 |
| AcsI | RAATTY | 2 cut(s) | 625, 1253 |
| AfaI | GTAC | 2 cut(s) | 422, 1541 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 179, 472, 1448 |
| AgsI | TTSAA | 7 cut(s) | 28, 70, 455, 763, 809, 875, 966 |
| AhlI | ACTAGT | 2 cut(s) | 283, 959 |
| AjnI | CCWGG | 2 cut(s) | 1320, 1366 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 492, 524 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1316, 1348 |
| Alw26I | GTCTC | 5 cut(s) | 421, 558, 903, 1460, 1499 |
| AlwI | GGATC | 2 cut(s) | 62, 136 |
| Ama87I | CYCGRG | 1 cut(s) | 906 |
| Aor13HI | TCCGGA | 2 cut(s) | 125, 1282 |
| AoxI | GGCC | 6 cut(s) | 244, 306, 547, 1017, 1318, 1461 |
| ApeKI | GCWGC | 3 cut(s) | 365, 1388, 1391 |
| ApoI | RAATTY | 2 cut(s) | 625, 1253 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 386, 418 |
| AseI | ATTAAT | 1 cut(s) | 561 |
| AspLEI | GCGC | 1 cut(s) | 757 |
| AspS9I | GGNCC | 2 cut(s) | 245, 1246 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 1009 |
| AsuII | TTCGAA | 1 cut(s) | 137 |
| AvaI | CYCGRG | 1 cut(s) | 906 |
| AvaII | GGWCC | 1 cut(s) | 1246 |
| BalI | TGGCCA | 2 cut(s) | 308, 1019 |
| BbsI | GAAGAC | 1 cut(s) | 329 |
| BbvI | GCAGC | 3 cut(s) | 352, 1375, 1403 |
| BccI | CCATC | 5 cut(s) | 163, 670, 720, 779, 932 |
| BceAI | ACGGC | 1 cut(s) | 333 |
| BciT130I | CCWGG | 2 cut(s) | 1322, 1368 |
| BclI | TGATCA | 1 cut(s) | 796 |
| BcoDI | GTCTC | 5 cut(s) | 421, 558, 903, 1460, 1499 |
| BcuI | ACTAGT | 2 cut(s) | 283, 959 |
| BfaI | CTAG | 7 cut(s) | 197, 284, 606, 929, 960, 1158, 1443 |
| BfmI | CTRYAG | 2 cut(s) | 360, 1389 |
| BfuAI | ACCTGC | 1 cut(s) | 1163 |
| BisI | GCNGC | 3 cut(s) | 366, 1389, 1392 |
| BlsI | GCNGC | 3 cut(s) | 367, 1390, 1393 |
| BmcAI | AGTACT | 1 cut(s) | 422 |
| Bme1390I | CCNGG | 2 cut(s) | 1322, 1368 |
| Bme18I | GGWCC | 1 cut(s) | 1246 |
| BmeT110I | CYCGRG | 1 cut(s) | 906 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 1246 |
| BmiI | GGNNCC | 2 cut(s) | 1247, 1248 |
| BmrFI | CCNGG | 2 cut(s) | 1322, 1368 |
| BmrI | ACTGGG | 1 cut(s) | 44 |
| BmsI | GCATC | 3 cut(s) | 377, 564, 894 |
| BmuI | ACTGGG | 1 cut(s) | 44 |
| BpiI | GAAGAC | 1 cut(s) | 329 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1286, 1318 |
| BpmI | CTGGAG | 5 cut(s) | 328, 445, 851, 1122, 1389 |
| Bpu14I | TTCGAA | 1 cut(s) | 137 |
| BpuEI | CTTGAG | 1 cut(s) | 128 |
| BsaI | GGTCTC | 2 cut(s) | 1460, 1499 |
| BsaJI | CCNNGG | 4 cut(s) | 309, 544, 843, 1470 |
| BsaWI | WCCGGW | 2 cut(s) | 125, 1282 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 179, 472, 1448 |
| Bse1I | ACTGG | 4 cut(s) | 39, 428, 550, 1330 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| BseAI | TCCGGA | 2 cut(s) | 125, 1282 |
| BseBI | CCWGG | 2 cut(s) | 1322, 1368 |
| BseDI | CCNNGG | 4 cut(s) | 309, 544, 843, 1470 |
| BseGI | GGATG | 5 cut(s) | 392, 885, 924, 1075, 1132 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 179, 472, 1448 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseMII | CTCAG | 2 cut(s) | 475, 1317 |
| BseNI | ACTGG | 4 cut(s) | 39, 428, 550, 1330 |
| BseRI | GAGGAG | 5 cut(s) | 80, 854, 1134, 1286, 1506 |
| BseXI | GCAGC | 3 cut(s) | 352, 1375, 1403 |
| Bsh1236I | CGCG | 2 cut(s) | 757, 971 |
| BshFI | GGCC | 6 cut(s) | 246, 308, 549, 1019, 1320, 1463 |
| BsiHKCI | CYCGRG | 1 cut(s) | 906 |
| BsiSI | CCGG | 2 cut(s) | 126, 1283 |
| BslFI | GGGAC | 3 cut(s) | 336, 1259, 1274 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 179, 472, 1448 |
| BsmAI | GTCTC | 5 cut(s) | 421, 558, 903, 1460, 1499 |
| BsmFI | GGGAC | 3 cut(s) | 336, 1259, 1274 |
| BsmI | GAATGC | 1 cut(s) | 1231 |
| BsnI | GGCC | 6 cut(s) | 246, 308, 549, 1019, 1320, 1463 |
| Bso31I | GGTCTC | 2 cut(s) | 1460, 1499 |
| BsoBI | CYCGRG | 1 cut(s) | 906 |
| Bsp119I | TTCGAA | 1 cut(s) | 137 |
| Bsp13I | TCCGGA | 2 cut(s) | 125, 1282 |
| Bsp143I | GATC | 3 cut(s) | 54, 128, 796 |
| BspACI | CCGC | 6 cut(s) | 152, 209, 214, 757, 969, 1382 |
| BspANI | GGCC | 6 cut(s) | 246, 308, 549, 1019, 1320, 1463 |
| BspCNI | CTCAG | 2 cut(s) | 474, 1316 |
| BspEI | TCCGGA | 2 cut(s) | 125, 1282 |
| BspFNI | CGCG | 2 cut(s) | 757, 971 |
| BspHI | TCATGA | 1 cut(s) | 318 |
| BspLI | GGNNCC | 2 cut(s) | 1247, 1248 |
| BspMAI | CTGCAG | 1 cut(s) | 1393 |
| BspMI | ACCTGC | 1 cut(s) | 1163 |
| BspPI | GGATC | 2 cut(s) | 62, 136 |
| BspT104I | TTCGAA | 1 cut(s) | 137 |
| BspTNI | GGTCTC | 2 cut(s) | 1460, 1499 |
| BsrBI | CCGCTC | 1 cut(s) | 216 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrI | ACTGG | 4 cut(s) | 39, 428, 550, 1330 |
| BssECI | CCNNGG | 4 cut(s) | 309, 544, 843, 1470 |
| BssMI | GATC | 3 cut(s) | 54, 128, 796 |
| BssT1I | CCWWGG | 3 cut(s) | 309, 843, 1470 |
| Bst2UI | CCWGG | 2 cut(s) | 1322, 1368 |
| Bst4CI | ACNGT | 4 cut(s) | 337, 737, 1493, 1501 |
| Bst6I | CTCTTC | 1 cut(s) | 1524 |
| BstBI | TTCGAA | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 2 cut(s) | 541, 1407 |
| BstDEI | CTNAG | 6 cut(s) | 234, 461, 566, 740, 1124, 1303 |
| BstEII | GGTNACC | 1 cut(s) | 168 |
| BstF5I | GGATG | 5 cut(s) | 392, 885, 924, 1075, 1132 |
| BstFNI | CGCG | 2 cut(s) | 757, 971 |
| BstHHI | GCGC | 1 cut(s) | 757 |
| BstKTI | GATC | 3 cut(s) | 57, 131, 799 |
| BstMAI | GTCTC | 5 cut(s) | 421, 558, 903, 1460, 1499 |
| BstMBI | GATC | 3 cut(s) | 54, 128, 796 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 222, 305, 1388 |
| BstNI | CCWGG | 2 cut(s) | 1322, 1368 |
| BstNSI | RCATGY | 1 cut(s) | 940 |
| BstPI | GGTNACC | 1 cut(s) | 168 |
| BstSCI | CCNGG | 2 cut(s) | 1320, 1366 |
| BstSFI | CTRYAG | 2 cut(s) | 360, 1389 |
| BstUI | CGCG | 2 cut(s) | 757, 971 |
| BstV1I | GCAGC | 3 cut(s) | 352, 1375, 1403 |
| BstV2I | GAAGAC | 1 cut(s) | 329 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 931 |
| BsuRI | GGCC | 6 cut(s) | 246, 308, 549, 1019, 1320, 1463 |
| BtgZI | GCGATG | 1 cut(s) | 1321 |
| BtsCI | GGATG | 5 cut(s) | 392, 885, 924, 1075, 1132 |
| BtsIMutI | CAGTG | 1 cut(s) | 1497 |
| BveI | ACCTGC | 1 cut(s) | 1163 |
| Cac8I | GCNNGC | 2 cut(s) | 541, 1407 |
| CciI | TCATGA | 1 cut(s) | 318 |
| CfoI | GCGC | 1 cut(s) | 757 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 1246 |
| Csp6I | GTAC | 2 cut(s) | 421, 1540 |
| CviAII | CATG | 6 cut(s) | 21, 319, 329, 937, 1477, 1523 |
| CviQI | GTAC | 2 cut(s) | 421, 1540 |
| DdeI | CTNAG | 6 cut(s) | 234, 461, 566, 740, 1124, 1303 |
| DpnI | GATC | 3 cut(s) | 56, 130, 798 |
| DpnII | GATC | 3 cut(s) | 54, 128, 796 |
| EaeI | YGGCCR | 4 cut(s) | 306, 547, 1017, 1461 |
| Eam1104I | CTCTTC | 1 cut(s) | 1524 |
| EarI | CTCTTC | 1 cut(s) | 1524 |
| Eco130I | CCWWGG | 3 cut(s) | 309, 843, 1470 |
| Eco31I | GGTCTC | 2 cut(s) | 1460, 1499 |
| Eco32I | GATATC | 1 cut(s) | 1081 |
| Eco47I | GGWCC | 1 cut(s) | 1246 |
| Eco88I | CYCGRG | 1 cut(s) | 906 |
| Eco91I | GGTNACC | 1 cut(s) | 168 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1246 |
| EcoO65I | GGTNACC | 1 cut(s) | 168 |
| EcoRI | GAATTC | 1 cut(s) | 1253 |
| EcoRII | CCWGG | 2 cut(s) | 1320, 1366 |
| EcoRV | GATATC | 1 cut(s) | 1081 |
| EcoT14I | CCWWGG | 3 cut(s) | 309, 843, 1470 |
| EcoT22I | ATGCAT | 1 cut(s) | 1231 |
| ErhI | CCWWGG | 3 cut(s) | 309, 843, 1470 |
| FaeI | CATG | 6 cut(s) | 24, 322, 332, 940, 1480, 1526 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1503, 1535 |
| FaqI | GGGAC | 3 cut(s) | 336, 1259, 1274 |
| FatI | CATG | 6 cut(s) | 20, 318, 328, 936, 1476, 1522 |
| FauI | CCCGC | 1 cut(s) | 216 |
| FbaI | TGATCA | 1 cut(s) | 796 |
| Fnu4HI | GCNGC | 3 cut(s) | 366, 1389, 1392 |
| FokI | GGATG | 5 cut(s) | 399, 872, 911, 1082, 1119 |
| Fsp4HI | GCNGC | 3 cut(s) | 366, 1389, 1392 |
| FspBI | CTAG | 7 cut(s) | 197, 284, 606, 929, 960, 1158, 1443 |
| GlaI | GCGC | 1 cut(s) | 756 |
| GluI | GCNGC | 3 cut(s) | 366, 1389, 1392 |
| GsuI | CTGGAG | 5 cut(s) | 328, 445, 851, 1122, 1389 |
| HaeIII | GGCC | 6 cut(s) | 246, 308, 549, 1019, 1320, 1463 |
| HapII | CCGG | 2 cut(s) | 126, 1283 |
| HhaI | GCGC | 1 cut(s) | 757 |
| Hin1II | CATG | 6 cut(s) | 24, 322, 332, 940, 1480, 1526 |
| Hin6I | GCGC | 1 cut(s) | 755 |
| HinP1I | GCGC | 1 cut(s) | 755 |
| HinfI | GANTC | 3 cut(s) | 28, 789, 839 |
| HpaII | CCGG | 2 cut(s) | 126, 1283 |
| HphI | GGTGA | 2 cut(s) | 49, 1009 |
| Hpy166II | GTNNAC | 3 cut(s) | 523, 934, 1489 |
| Hpy188I | TCNGA | 3 cut(s) | 438, 704, 1316 |
| Hpy188III | TCNNGA | 6 cut(s) | 126, 319, 452, 666, 908, 1283 |
| Hpy8I | GTNNAC | 3 cut(s) | 523, 934, 1489 |
| HpyAV | CCTTC | 5 cut(s) | 76, 726, 1289, 1350, 1424 |
| HpyCH4III | ACNGT | 4 cut(s) | 337, 737, 1493, 1501 |
| HpyCH4IV | ACGT | 1 cut(s) | 671 |
| HpyCH4V | TGCA | 9 cut(s) | 368, 478, 494, 1172, 1229, 1235, 1391, 1409, 1457 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 222, 305, 1388 |
| HpyF3I | CTNAG | 6 cut(s) | 234, 461, 566, 740, 1124, 1303 |
| HpySE526I | ACGT | 1 cut(s) | 671 |
| Hsp92II | CATG | 6 cut(s) | 24, 322, 332, 940, 1480, 1526 |
| HspAI | GCGC | 1 cut(s) | 755 |
| KflI | GGGWCCC | 1 cut(s) | 1246 |
| Kpn2I | TCCGGA | 2 cut(s) | 125, 1282 |
| Ksp22I | TGATCA | 1 cut(s) | 796 |
| Kzo9I | GATC | 3 cut(s) | 54, 128, 796 |
| LmnI | GCTCC | 3 cut(s) | 412, 1147, 1519 |
| Lsp1109I | GCAGC | 3 cut(s) | 352, 1375, 1403 |
| LweI | GCATC | 3 cut(s) | 377, 564, 894 |
| MaeI | CTAG | 7 cut(s) | 197, 284, 606, 929, 960, 1158, 1443 |
| MaeII | ACGT | 1 cut(s) | 671 |
| MaeIII | GTNAC | 4 cut(s) | 147, 168, 1190, 1372 |
| MalI | GATC | 3 cut(s) | 56, 130, 798 |
| MbiI | CCGCTC | 1 cut(s) | 216 |
| MboI | GATC | 3 cut(s) | 54, 128, 796 |
| MboII | GAAGA | 7 cut(s) | 334, 512, 515, 647, 703, 1043, 1511 |
| MfeI | CAATTG | 1 cut(s) | 1167 |
| MlsI | TGGCCA | 2 cut(s) | 308, 1019 |
| MluNI | TGGCCA | 2 cut(s) | 308, 1019 |
| MmeI | TCCRAC | 4 cut(s) | 185, 302, 615, 954 |
| Mox20I | TGGCCA | 2 cut(s) | 308, 1019 |
| Mph1103I | ATGCAT | 1 cut(s) | 1231 |
| MroI | TCCGGA | 2 cut(s) | 125, 1282 |
| MscI | TGGCCA | 2 cut(s) | 308, 1019 |
| MseI | TTAA | 4 cut(s) | 561, 803, 983, 1151 |
| MslI | CAYNNNNRTG | 1 cut(s) | 929 |
| Msp20I | TGGCCA | 2 cut(s) | 308, 1019 |
| MspA1I | CMGCKG | 2 cut(s) | 365, 1394 |
| MspI | CCGG | 2 cut(s) | 126, 1283 |
| MspR9I | CCNGG | 2 cut(s) | 1322, 1368 |
| MunI | CAATTG | 1 cut(s) | 1167 |
| Mva1269I | GAATGC | 1 cut(s) | 1231 |
| MvaI | CCWGG | 2 cut(s) | 1322, 1368 |
| MvnI | CGCG | 2 cut(s) | 757, 971 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 222, 305, 1388 |
| NdeII | GATC | 3 cut(s) | 54, 128, 796 |
| NlaIII | CATG | 6 cut(s) | 24, 322, 332, 940, 1480, 1526 |
| NlaIV | GGNNCC | 2 cut(s) | 1247, 1248 |
| NmeAIII | GCCGAG | 2 cut(s) | 525, 1489 |
| NmuCI | GTSAC | 1 cut(s) | 1372 |
| NsiI | ATGCAT | 1 cut(s) | 1231 |
| NspI | RCATGY | 1 cut(s) | 940 |
| NspV | TTCGAA | 1 cut(s) | 137 |
| PaeR7I | CTCGAG | 1 cut(s) | 906 |
| PagI | TCATGA | 1 cut(s) | 318 |
| PaqCI | CACCTGC | 1 cut(s) | 1163 |
| PctI | GAATGC | 1 cut(s) | 1231 |
| PfeI | GAWTC | 3 cut(s) | 28, 789, 839 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 179 |
| PfoI | TCCNGGA | 1 cut(s) | 1366 |
| PkrI | GCNGC | 3 cut(s) | 367, 1390, 1393 |
| PpuMI | RGGWCCY | 1 cut(s) | 1246 |
| PshBI | ATTAAT | 1 cut(s) | 561 |
| Psp1406I | AACGTT | 1 cut(s) | 671 |
| Psp5II | RGGWCCY | 1 cut(s) | 1246 |
| Psp6I | CCWGG | 2 cut(s) | 1320, 1366 |
| PspEI | GGTNACC | 1 cut(s) | 168 |
| PspGI | CCWGG | 2 cut(s) | 1320, 1366 |
| PspN4I | GGNNCC | 2 cut(s) | 1247, 1248 |
| PspPI | GGNCC | 2 cut(s) | 245, 1246 |
| PspPPI | RGGWCCY | 1 cut(s) | 1246 |
| PstI | CTGCAG | 1 cut(s) | 1393 |
| PvuII | CAGCTG | 2 cut(s) | 365, 1394 |
| RsaI | GTAC | 2 cut(s) | 422, 1541 |
| RsaNI | GTAC | 2 cut(s) | 421, 1540 |
| RseI | CAYNNNNRTG | 1 cut(s) | 929 |
| SaqAI | TTAA | 4 cut(s) | 561, 803, 983, 1151 |
| SatI | GCNGC | 3 cut(s) | 366, 1389, 1392 |
| Sau3AI | GATC | 3 cut(s) | 54, 128, 796 |
| Sau96I | GGNCC | 2 cut(s) | 245, 1246 |
| ScaI | AGTACT | 1 cut(s) | 422 |
| ScrFI | CCNGG | 2 cut(s) | 1322, 1368 |
| SfaNI | GCATC | 3 cut(s) | 377, 564, 894 |
| SfcI | CTRYAG | 2 cut(s) | 360, 1389 |
| Sfr274I | CTCGAG | 1 cut(s) | 906 |
| SfuI | TTCGAA | 1 cut(s) | 137 |
| SinI | GGWCC | 1 cut(s) | 1246 |
| SlaI | CTCGAG | 1 cut(s) | 906 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 929 |
| SmlI | CTYRAG | 2 cut(s) | 143, 906 |
| SmoI | CTYRAG | 2 cut(s) | 143, 906 |
| SpeI | ACTAGT | 2 cut(s) | 283, 959 |
| SsiI | CCGC | 6 cut(s) | 152, 209, 214, 757, 969, 1382 |
| SspMI | CTAG | 7 cut(s) | 197, 284, 606, 929, 960, 1158, 1443 |
| StyD4I | CCNGG | 2 cut(s) | 1320, 1366 |
| StyI | CCWWGG | 3 cut(s) | 309, 843, 1470 |
| TaaI | ACNGT | 4 cut(s) | 337, 737, 1493, 1501 |
| TaiI | ACGT | 1 cut(s) | 674 |
| TaqI | TCGA | 5 cut(s) | 137, 777, 897, 907, 1083 |
| TatI | WGTACW | 2 cut(s) | 420, 1539 |
| TfiI | GAWTC | 3 cut(s) | 28, 789, 839 |
| Tru1I | TTAA | 4 cut(s) | 561, 803, 983, 1151 |
| Tru9I | TTAA | 4 cut(s) | 561, 803, 983, 1151 |
| TscAI | CASTG | 1 cut(s) | 1504 |
| TseFI | GTSAC | 1 cut(s) | 1372 |
| TseI | GCWGC | 3 cut(s) | 365, 1388, 1391 |
| Tsp45I | GTSAC | 1 cut(s) | 1372 |
| TspDTI | ATGAA | 6 cut(s) | 97, 108, 282, 335, 1324, 1511 |
| TspGWI | ACGGA | 1 cut(s) | 1496 |
| TspRI | CASTG | 1 cut(s) | 1504 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 1 cut(s) | 1246 |
| VspI | ATTAAT | 1 cut(s) | 561 |
| XapI | RAATTY | 2 cut(s) | 625, 1253 |
| XceI | RCATGY | 1 cut(s) | 940 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 850 |
| XhoI | CTCGAG | 1 cut(s) | 906 |
| XspI | CTAG | 7 cut(s) | 197, 284, 606, 929, 960, 1158, 1443 |
| ZrmI | AGTACT | 1 cut(s) | 422 |
| Zsp2I | ATGCAT | 1 cut(s) | 1231 |