Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AjnI | CCWGG | 1 cut(s) | 177 |
| AluBI | AGCT | 3 cut(s) | 62, 249, 272 |
| AluI | AGCT | 3 cut(s) | 62, 249, 272 |
| Alw26I | GTCTC | 1 cut(s) | 26 |
| ApeKI | GCWGC | 2 cut(s) | 62, 269 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 221 |
| AsuHPI | GGTGA | 1 cut(s) | 131 |
| AsuII | TTCGAA | 1 cut(s) | 80 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 2 cut(s) | 49, 281 |
| BciT130I | CCWGG | 1 cut(s) | 179 |
| BcnI | CCSGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 1 cut(s) | 26 |
| BfaI | CTAG | 1 cut(s) | 246 |
| BisI | GCNGC | 2 cut(s) | 63, 270 |
| BlsI | GCNGC | 2 cut(s) | 64, 271 |
| Bme1390I | CCNGG | 2 cut(s) | 179, 221 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 1 cut(s) | 138 |
| BmrFI | CCNGG | 2 cut(s) | 179, 221 |
| BmrI | ACTGGG | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 6 |
| BmuI | ACTGGG | 1 cut(s) | 104 |
| Bpu14I | TTCGAA | 1 cut(s) | 80 |
| BpuMI | CCSGG | 1 cut(s) | 221 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 2 cut(s) | 75, 99 |
| BseBI | CCWGG | 1 cut(s) | 179 |
| BseNI | ACTGG | 2 cut(s) | 75, 99 |
| BseXI | GCAGC | 2 cut(s) | 49, 281 |
| BsiSI | CCGG | 2 cut(s) | 20, 220 |
| BsmAI | GTCTC | 1 cut(s) | 26 |
| Bsp119I | TTCGAA | 1 cut(s) | 80 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspLI | GGNNCC | 1 cut(s) | 138 |
| BspT104I | TTCGAA | 1 cut(s) | 80 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrI | ACTGG | 2 cut(s) | 75, 99 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssMI | GATC | 1 cut(s) | 199 |
| Bst2UI | CCWGG | 1 cut(s) | 179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 203 |
| BstBI | TTCGAA | 1 cut(s) | 80 |
| BstC8I | GCNNGC | 2 cut(s) | 21, 101 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 1 cut(s) | 26 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 269, 275 |
| BstNI | CCWGG | 1 cut(s) | 179 |
| BstSCI | CCNGG | 2 cut(s) | 177, 219 |
| BstV1I | GCAGC | 2 cut(s) | 49, 281 |
| Cac8I | GCNNGC | 2 cut(s) | 21, 101 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 284 |
| CsiI | ACCWGGT | 1 cut(s) | 177 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 162, 197 |
| CviAII | CATG | 2 cut(s) | 13, 203 |
| CviJI | RGCY | 6 cut(s) | 23, 62, 103, 185, 249, 272 |
| CviKI_1 | RGCY | 6 cut(s) | 23, 62, 103, 185, 249, 272 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 1 cut(s) | 177 |
| FaeI | CATG | 2 cut(s) | 16, 206 |
| FaiI | YATR | 8 cut(s) | 9, 14, 106, 159, 161, 204, 234, 287 |
| FatI | CATG | 2 cut(s) | 12, 202 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 270 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 270 |
| FspBI | CTAG | 1 cut(s) | 246 |
| GluI | GCNGC | 2 cut(s) | 63, 270 |
| HapII | CCGG | 2 cut(s) | 20, 220 |
| HgaI | GACGC | 1 cut(s) | 284 |
| Hin1II | CATG | 2 cut(s) | 16, 206 |
| HinfI | GANTC | 2 cut(s) | 38, 236 |
| HpaII | CCGG | 2 cut(s) | 20, 220 |
| HphI | GGTGA | 1 cut(s) | 131 |
| HpyCH4V | TGCA | 2 cut(s) | 197, 269 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 269, 275 |
| Hsp92II | CATG | 2 cut(s) | 16, 206 |
| KroI | GCCGGC | 1 cut(s) | 19 |
| KroNI | GCCGGC | 1 cut(s) | 21 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LmnI | GCTCC | 1 cut(s) | 165 |
| LpnPI | CCDG | 7 cut(s) | 33, 80, 85, 88, 164, 191, 233 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 281 |
| LweI | GCATC | 1 cut(s) | 6 |
| MabI | ACCWGGT | 1 cut(s) | 177 |
| MaeI | CTAG | 1 cut(s) | 246 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 1 cut(s) | 182 |
| MluCI | AATT | 1 cut(s) | 150 |
| MnlI | CCTC | 3 cut(s) | 115, 163, 217 |
| MroNI | GCCGGC | 1 cut(s) | 19 |
| MseI | TTAA | 1 cut(s) | 128 |
| MspA1I | CMGCKG | 1 cut(s) | 272 |
| MspI | CCGG | 2 cut(s) | 20, 220 |
| MspR9I | CCNGG | 2 cut(s) | 179, 221 |
| MvaI | CCWGG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 269, 275 |
| NaeI | GCCGGC | 1 cut(s) | 21 |
| NciI | CCSGG | 1 cut(s) | 221 |
| NdeII | GATC | 1 cut(s) | 199 |
| NgoMIV | GCCGGC | 1 cut(s) | 19 |
| NlaIII | CATG | 2 cut(s) | 16, 206 |
| NlaIV | GGNNCC | 1 cut(s) | 138 |
| NspV | TTCGAA | 1 cut(s) | 80 |
| PdiI | GCCGGC | 1 cut(s) | 21 |
| PfeI | GAWTC | 2 cut(s) | 38, 236 |
| PkrI | GCNGC | 2 cut(s) | 64, 271 |
| Psp6I | CCWGG | 1 cut(s) | 177 |
| PspGI | CCWGG | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 138 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PvuII | CAGCTG | 1 cut(s) | 272 |
| SaqAI | TTAA | 1 cut(s) | 128 |
| SatI | GCNGC | 2 cut(s) | 63, 270 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 2 cut(s) | 179, 221 |
| SetI | ASST | 8 cut(s) | 64, 126, 134, 183, 228, 247, 251, 274 |
| SexAI | ACCWGGT | 1 cut(s) | 177 |
| SfaNI | GCATC | 1 cut(s) | 6 |
| SfuI | TTCGAA | 1 cut(s) | 80 |
| SinI | GGWCC | 1 cut(s) | 4 |
| Sse9I | AATT | 1 cut(s) | 150 |
| SspMI | CTAG | 1 cut(s) | 246 |
| StyD4I | CCNGG | 2 cut(s) | 177, 219 |
| TaqI | TCGA | 1 cut(s) | 80 |
| TasI | AATT | 1 cut(s) | 150 |
| TfiI | GAWTC | 2 cut(s) | 38, 236 |
| Tru1I | TTAA | 1 cut(s) | 128 |
| Tru9I | TTAA | 1 cut(s) | 128 |
| TseI | GCWGC | 2 cut(s) | 62, 269 |
| TspDTI | ATGAA | 2 cut(s) | 59, 146 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XspI | CTAG | 1 cut(s) | 246 |