ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 677 - 800 | 8.2e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 326 |
| AccB1I | GGYRCC | 1 cut(s) | 326 |
| AccBSI | CCGCTC | 1 cut(s) | 2072 |
| AccII | CGCG | 1 cut(s) | 1491 |
| AccIII | TCCGGA | 2 cut(s) | 277, 2146 |
| AclWI | GGATC | 2 cut(s) | 67, 1375 |
| AcsI | RAATTY | 3 cut(s) | 79, 1533, 2186 |
| AfaI | GTAC | 6 cut(s) | 118, 270, 328, 423, 1098, 1124 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 535, 1350, 2012, 2064, 2065, 2132, 2153 |
| AflII | CTTAAG | 1 cut(s) | 515 |
| AflIII | ACRYGT | 1 cut(s) | 666 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1013, 1428 |
| AjiI | CACGTC | 2 cut(s) | 651, 685 |
| AjnI | CCWGG | 3 cut(s) | 509, 823, 1125 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 428, 460, 695, 727 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1751, 1783 |
| Alw21I | GWGCWC | 3 cut(s) | 1364, 1846, 2154 |
| Alw26I | GTCTC | 8 cut(s) | 243, 484, 825, 980, 1415, 1628, 2148, 2219 |
| AlwI | GGATC | 2 cut(s) | 67, 1375 |
| Ama87I | CYCGRG | 1 cut(s) | 2096 |
| Aor13HI | TCCGGA | 2 cut(s) | 277, 2146 |
| AoxI | GGCC | 3 cut(s) | 999, 1653, 2356 |
| ApeKI | GCWGC | 5 cut(s) | 94, 2390, 2410, 2453, 2462 |
| ApoI | RAATTY | 3 cut(s) | 79, 1533, 2186 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 674, 706 |
| AseI | ATTAAT | 3 cut(s) | 939, 1701, 2028 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 783 |
| Asp718I | GGTACC | 1 cut(s) | 326 |
| AspA2I | CCTAGG | 1 cut(s) | 46 |
| AspLEI | GCGC | 2 cut(s) | 453, 1491 |
| AspS9I | GGNCC | 3 cut(s) | 526, 827, 999 |
| AsuC2I | CCSGG | 1 cut(s) | 1345 |
| AsuHPI | GGTGA | 2 cut(s) | 2323, 2356 |
| AsuII | TTCGAA | 1 cut(s) | 777 |
| AsuNHI | GCTAGC | 2 cut(s) | 2107, 2164 |
| AvaI | CYCGRG | 1 cut(s) | 2096 |
| AvaII | GGWCC | 2 cut(s) | 526, 827 |
| AvrII | CCTAGG | 1 cut(s) | 46 |
| AxyI | CCTNAGG | 1 cut(s) | 1003 |
| BaeGI | GKGCMC | 1 cut(s) | 1345 |
| BanI | GGYRCC | 1 cut(s) | 326 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1039, 1071 |
| BbsI | GAAGAC | 2 cut(s) | 574, 1163 |
| Bbv12I | GWGCWC | 3 cut(s) | 1364, 1846, 2154 |
| BbvI | GCAGC | 5 cut(s) | 81, 2402, 2422, 2440, 2474 |
| BciT130I | CCWGG | 3 cut(s) | 511, 825, 1127 |
| BciVI | GTATCC | 1 cut(s) | 819 |
| BcnI | CCSGG | 1 cut(s) | 1345 |
| BcoDI | GTCTC | 8 cut(s) | 243, 484, 825, 980, 1415, 1628, 2148, 2219 |
| BfaI | CTAG | 6 cut(s) | 47, 207, 1367, 2108, 2165, 2195 |
| BfmI | CTRYAG | 1 cut(s) | 2454 |
| BfoI | RGCGCY | 1 cut(s) | 454 |
| BfrI | CTTAAG | 1 cut(s) | 515 |
| BfuI | GTATCC | 1 cut(s) | 819 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1481 |
| BisI | GCNGC | 7 cut(s) | 95, 1667, 2359, 2391, 2411, 2454, 2463 |
| BlnI | CCTAGG | 1 cut(s) | 46 |
| BlsI | GCNGC | 7 cut(s) | 96, 1668, 2360, 2392, 2412, 2455, 2464 |
| Bme1390I | CCNGG | 4 cut(s) | 511, 825, 1127, 1345 |
| Bme18I | GGWCC | 2 cut(s) | 526, 827 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1013, 1428 |
| BmeT110I | CYCGRG | 1 cut(s) | 2096 |
| BmgBI | CACGTC | 2 cut(s) | 651, 685 |
| BmgT120I | GGNCC | 3 cut(s) | 526, 827, 999 |
| BmiI | GGNNCC | 3 cut(s) | 53, 328, 527 |
| BmrFI | CCNGG | 4 cut(s) | 511, 825, 1127, 1345 |
| BmrI | ACTGGG | 1 cut(s) | 2142 |
| BmsI | GCATC | 6 cut(s) | 283, 478, 589, 616, 828, 2221 |
| BmtI | GCTAGC | 2 cut(s) | 2111, 2168 |
| BmuI | ACTGGG | 1 cut(s) | 2142 |
| BoxI | GACNNNNGTC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 2 cut(s) | 574, 1163 |
| BpmI | CTGGAG | 1 cut(s) | 807 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2363 |
| Bpu14I | TTCGAA | 1 cut(s) | 777 |
| BpuMI | CCSGG | 1 cut(s) | 1345 |
| BsaAI | YACGTR | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 4 cut(s) | 46, 55, 1126, 1755 |
| BsaWI | WCCGGW | 3 cut(s) | 277, 2008, 2146 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 805, 835, 1897, 1927 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 535, 1350, 2012, 2064, 2065, 2132, 2153 |
| Bse1I | ACTGG | 6 cut(s) | 328, 1104, 1206, 1429, 2137, 2275 |
| Bse21I | CCTNAGG | 1 cut(s) | 1003 |
| Bse3DI | GCAATG | 2 cut(s) | 2187, 2374 |
| BseAI | TCCGGA | 2 cut(s) | 277, 2146 |
| BseBI | CCWGG | 3 cut(s) | 511, 825, 1127 |
| BseDI | CCNNGG | 4 cut(s) | 46, 55, 1126, 1755 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 535, 1350, 2012, 2064, 2065, 2132, 2153 |
| BseMI | GCAATG | 2 cut(s) | 2187, 2374 |
| BseMII | CTCAG | 5 cut(s) | 104, 405, 1017, 1993, 2354 |
| BseNI | ACTGG | 6 cut(s) | 328, 1104, 1206, 1429, 2137, 2275 |
| BseRI | GAGGAG | 7 cut(s) | 314, 491, 635, 916, 1088, 2130, 2427 |
| BseSI | GKGCMC | 1 cut(s) | 1345 |
| BseXI | GCAGC | 5 cut(s) | 81, 2402, 2422, 2440, 2474 |
| BseYI | CCCAGC | 1 cut(s) | 287 |
| BsgI | GTGCAG | 1 cut(s) | 783 |
| Bsh1236I | CGCG | 1 cut(s) | 1491 |
| BshFI | GGCC | 3 cut(s) | 1001, 1655, 2358 |
| BshNI | GGYRCC | 1 cut(s) | 326 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1364, 1846, 2154 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2096 |
| BsiSI | CCGG | 5 cut(s) | 278, 1345, 1556, 2009, 2147 |
| BslFI | GGGAC | 2 cut(s) | 539, 2304 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 535, 1350, 2012, 2064, 2065, 2132, 2153 |
| BsmAI | GTCTC | 8 cut(s) | 243, 484, 825, 980, 1415, 1628, 2148, 2219 |
| BsmFI | GGGAC | 2 cut(s) | 539, 2304 |
| BsmI | GAATGC | 3 cut(s) | 145, 754, 2042 |
| BsnI | GGCC | 3 cut(s) | 1001, 1655, 2358 |
| BsoBI | CYCGRG | 1 cut(s) | 2096 |
| Bsp119I | TTCGAA | 1 cut(s) | 777 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1345, 1364, 1846, 2154 |
| Bsp13I | TCCGGA | 2 cut(s) | 277, 2146 |
| Bsp143I | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| Bsp19I | CCATGG | 1 cut(s) | 55 |
| BspANI | GGCC | 3 cut(s) | 1001, 1655, 2358 |
| BspCNI | CTCAG | 5 cut(s) | 103, 406, 1016, 1992, 2355 |
| BspEI | TCCGGA | 2 cut(s) | 277, 2146 |
| BspFNI | CGCG | 1 cut(s) | 1491 |
| BspLI | GGNNCC | 3 cut(s) | 53, 328, 527 |
| BspMAI | CTGCAG | 1 cut(s) | 2458 |
| BspOI | GCTAGC | 2 cut(s) | 2111, 2168 |
| BspPI | GGATC | 2 cut(s) | 67, 1375 |
| BspT104I | TTCGAA | 1 cut(s) | 777 |
| BspT107I | GGYRCC | 1 cut(s) | 326 |
| BspTI | CTTAAG | 1 cut(s) | 515 |
| BsrBI | CCGCTC | 1 cut(s) | 2072 |
| BsrDI | GCAATG | 2 cut(s) | 2187, 2374 |
| BsrI | ACTGG | 6 cut(s) | 328, 1104, 1206, 1429, 2137, 2275 |
| BssECI | CCNNGG | 4 cut(s) | 46, 55, 1126, 1755 |
| BssMI | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| BssT1I | CCWWGG | 3 cut(s) | 46, 55, 1755 |
| Bst2UI | CCWGG | 3 cut(s) | 511, 825, 1127 |
| Bst4CI | ACNGT | 1 cut(s) | 1578 |
| Bst6I | CTCTTC | 3 cut(s) | 774, 1022, 1546 |
| BstAFI | CTTAAG | 1 cut(s) | 515 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2396 |
| BstBAI | YACGTR | 1 cut(s) | 72 |
| BstBI | TTCGAA | 1 cut(s) | 777 |
| BstC8I | GCNNGC | 6 cut(s) | 1207, 1211, 2074, 2109, 2166, 2401 |
| BstDEI | CTNAG | 7 cut(s) | 90, 150, 414, 1003, 1226, 1979, 2363 |
| BstDSI | CCRYGG | 1 cut(s) | 55 |
| BstFNI | CGCG | 1 cut(s) | 1491 |
| BstH2I | RGCGCY | 1 cut(s) | 454 |
| BstHHI | GCGC | 2 cut(s) | 453, 1491 |
| BstKTI | GATC | 4 cut(s) | 62, 500, 1383, 2050 |
| BstMAI | GTCTC | 8 cut(s) | 243, 484, 825, 980, 1415, 1628, 2148, 2219 |
| BstMBI | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 151, 1472, 1481, 2117, 2364, 2396, 2459, 2462 |
| BstNI | CCWGG | 3 cut(s) | 511, 825, 1127 |
| BstNSI | RCATGY | 1 cut(s) | 670 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 235 |
| BstSCI | CCNGG | 4 cut(s) | 509, 823, 1125, 1343 |
| BstSFI | CTRYAG | 1 cut(s) | 2454 |
| BstSLI | GKGCMC | 1 cut(s) | 1345 |
| BstUI | CGCG | 1 cut(s) | 1491 |
| BstV1I | GCAGC | 5 cut(s) | 81, 2402, 2422, 2440, 2474 |
| BstV2I | GAAGAC | 2 cut(s) | 574, 1163 |
| BstX2I | RGATCY | 2 cut(s) | 59, 1380 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1591 |
| BstYI | RGATCY | 2 cut(s) | 59, 1380 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1003 |
| BsuI | GTATCC | 1 cut(s) | 819 |
| BsuRI | GGCC | 3 cut(s) | 1001, 1655, 2358 |
| BtgI | CCRYGG | 1 cut(s) | 55 |
| BtrI | CACGTC | 2 cut(s) | 651, 685 |
| BtsI | GCAGTG | 2 cut(s) | 617, 903 |
| BtsIMutI | CAGTG | 4 cut(s) | 617, 903, 1041, 2130 |
| Cac8I | GCNNGC | 6 cut(s) | 1207, 1211, 2074, 2109, 2166, 2401 |
| CfoI | GCGC | 2 cut(s) | 453, 1491 |
| Cfr13I | GGNCC | 3 cut(s) | 526, 827, 999 |
| CseI | GACGC | 2 cut(s) | 579, 725 |
| Csp6I | GTAC | 6 cut(s) | 117, 269, 327, 422, 1097, 1123 |
| CviAII | CATG | 8 cut(s) | 56, 185, 605, 667, 791, 1115, 2051, 2351 |
| CviQI | GTAC | 6 cut(s) | 117, 269, 327, 422, 1097, 1123 |
| DdeI | CTNAG | 7 cut(s) | 90, 150, 414, 1003, 1226, 1979, 2363 |
| DpnI | GATC | 4 cut(s) | 61, 499, 1382, 2049 |
| DpnII | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| DraI | TTTAAA | 1 cut(s) | 1300 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1013, 1428 |
| Eam1104I | CTCTTC | 3 cut(s) | 774, 1022, 1546 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1013, 1428 |
| EarI | CTCTTC | 3 cut(s) | 774, 1022, 1546 |
| EciI | GGCGGA | 2 cut(s) | 325, 920 |
| Eco130I | CCWWGG | 3 cut(s) | 46, 55, 1755 |
| Eco47I | GGWCC | 2 cut(s) | 526, 827 |
| Eco81I | CCTNAGG | 1 cut(s) | 1003 |
| Eco88I | CYCGRG | 1 cut(s) | 2096 |
| EcoO109I | RGGNCCY | 1 cut(s) | 999 |
| EcoRI | GAATTC | 1 cut(s) | 79 |
| EcoRII | CCWGG | 3 cut(s) | 509, 823, 1125 |
| EcoT14I | CCWWGG | 3 cut(s) | 46, 55, 1755 |
| ErhI | CCWWGG | 3 cut(s) | 46, 55, 1755 |
| FaeI | CATG | 8 cut(s) | 59, 188, 608, 670, 794, 1118, 2054, 2354 |
| FaqI | GGGAC | 2 cut(s) | 539, 2304 |
| FatI | CATG | 8 cut(s) | 55, 184, 604, 666, 790, 1114, 2050, 2350 |
| FauI | CCCGC | 1 cut(s) | 2065 |
| FauNDI | CATATG | 2 cut(s) | 991, 1141 |
| Fnu4HI | GCNGC | 7 cut(s) | 95, 1667, 2359, 2391, 2411, 2454, 2463 |
| Fsp4HI | GCNGC | 7 cut(s) | 95, 1667, 2359, 2391, 2411, 2454, 2463 |
| FspBI | CTAG | 6 cut(s) | 47, 207, 1367, 2108, 2165, 2195 |
| GlaI | GCGC | 2 cut(s) | 452, 1490 |
| GluI | GCNGC | 7 cut(s) | 95, 1667, 2359, 2391, 2411, 2454, 2463 |
| GsaI | CCCAGC | 1 cut(s) | 291 |
| GsuI | CTGGAG | 1 cut(s) | 807 |
| HaeII | RGCGCY | 1 cut(s) | 454 |
| HaeIII | GGCC | 3 cut(s) | 1001, 1655, 2358 |
| HapII | CCGG | 5 cut(s) | 278, 1345, 1556, 2009, 2147 |
| HgaI | GACGC | 2 cut(s) | 579, 725 |
| HhaI | GCGC | 2 cut(s) | 453, 1491 |
| Hin1II | CATG | 8 cut(s) | 59, 188, 608, 670, 794, 1118, 2054, 2354 |
| Hin6I | GCGC | 2 cut(s) | 451, 1489 |
| HinP1I | GCGC | 2 cut(s) | 451, 1489 |
| HincII | GTYRAC | 2 cut(s) | 972, 1752 |
| HindII | GTYRAC | 2 cut(s) | 972, 1752 |
| HindIII | AAGCTT | 1 cut(s) | 675 |
| HpaII | CCGG | 5 cut(s) | 278, 1345, 1556, 2009, 2147 |
| HphI | GGTGA | 2 cut(s) | 2323, 2356 |
| Hpy166II | GTNNAC | 3 cut(s) | 972, 1752, 1946 |
| Hpy188I | TCNGA | 8 cut(s) | 85, 175, 181, 415, 682, 1256, 1449, 1982 |
| Hpy188III | TCNNGA | 9 cut(s) | 228, 278, 473, 740, 802, 830, 1005, 1367, 2147 |
| Hpy8I | GTNNAC | 3 cut(s) | 972, 1752, 1946 |
| HpyAV | CCTTC | 8 cut(s) | 430, 464, 610, 1516, 1713, 1938, 2170, 2335 |
| HpyCH4III | ACNGT | 1 cut(s) | 1578 |
| HpyCH4IV | ACGT | 6 cut(s) | 71, 650, 684, 773, 1166, 2279 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 151, 1472, 1481, 2117, 2364, 2396, 2459, 2462 |
| HpyF3I | CTNAG | 7 cut(s) | 90, 150, 414, 1003, 1226, 1979, 2363 |
| HpySE526I | ACGT | 6 cut(s) | 71, 650, 684, 773, 1166, 2279 |
| Hsp92II | CATG | 8 cut(s) | 59, 188, 608, 670, 794, 1118, 2054, 2354 |
| HspAI | GCGC | 2 cut(s) | 451, 1489 |
| Kpn2I | TCCGGA | 2 cut(s) | 277, 2146 |
| KpnI | GGTACC | 1 cut(s) | 330 |
| Kzo9I | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| LmnI | GCTCC | 7 cut(s) | 448, 903, 1359, 1841, 2069, 2117, 2149 |
| Lsp1109I | GCAGC | 5 cut(s) | 81, 2402, 2422, 2440, 2474 |
| LweI | GCATC | 6 cut(s) | 283, 478, 589, 616, 828, 2221 |
| MaeI | CTAG | 6 cut(s) | 47, 207, 1367, 2108, 2165, 2195 |
| MaeII | ACGT | 6 cut(s) | 71, 650, 684, 773, 1166, 2279 |
| MaeIII | GTNAC | 8 cut(s) | 505, 646, 924, 1272, 1606, 2053, 2311, 2344 |
| MalI | GATC | 4 cut(s) | 61, 499, 1382, 2049 |
| MbiI | CCGCTC | 1 cut(s) | 2072 |
| MboI | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| MflI | RGATCY | 2 cut(s) | 59, 1380 |
| MhlI | GDGCHC | 4 cut(s) | 1345, 1364, 1846, 2154 |
| MlyI | GAGTC | 5 cut(s) | 1453, 1723, 1951, 2320, 2341 |
| MmeI | TCCRAC | 3 cut(s) | 426, 836, 1170 |
| MroI | TCCGGA | 2 cut(s) | 277, 2146 |
| MroXI | GAANNNNTTC | 1 cut(s) | 783 |
| MslI | CAYNNNNRTG | 1 cut(s) | 952 |
| MspA1I | CMGCKG | 3 cut(s) | 94, 2453, 2465 |
| MspCI | CTTAAG | 1 cut(s) | 515 |
| MspI | CCGG | 5 cut(s) | 278, 1345, 1556, 2009, 2147 |
| MspR9I | CCNGG | 4 cut(s) | 511, 825, 1127, 1345 |
| Mva1269I | GAATGC | 3 cut(s) | 145, 754, 2042 |
| MvaI | CCWGG | 3 cut(s) | 511, 825, 1127 |
| MvnI | CGCG | 1 cut(s) | 1491 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 151, 1472, 1481, 2117, 2364, 2396, 2459, 2462 |
| NciI | CCSGG | 1 cut(s) | 1345 |
| NcoI | CCATGG | 1 cut(s) | 55 |
| NdeI | CATATG | 2 cut(s) | 991, 1141 |
| NdeII | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| NheI | GCTAGC | 2 cut(s) | 2107, 2164 |
| NlaIII | CATG | 8 cut(s) | 59, 188, 608, 670, 794, 1118, 2054, 2354 |
| NlaIV | GGNNCC | 3 cut(s) | 53, 328, 527 |
| NmuCI | GTSAC | 4 cut(s) | 646, 2053, 2311, 2344 |
| NspI | RCATGY | 1 cut(s) | 670 |
| NspV | TTCGAA | 1 cut(s) | 777 |
| PciI | ACATGT | 1 cut(s) | 666 |
| PctI | GAATGC | 3 cut(s) | 145, 754, 2042 |
| PdmI | GAANNNNTTC | 1 cut(s) | 783 |
| PfeI | GAWTC | 5 cut(s) | 176, 369, 1552, 1894, 2083 |
| PkrI | GCNGC | 7 cut(s) | 96, 1668, 2360, 2392, 2412, 2455, 2464 |
| PleI | GAGTC | 5 cut(s) | 1452, 1722, 1950, 2320, 2341 |
| PpsI | GAGTC | 5 cut(s) | 1452, 1722, 1950, 2320, 2341 |
| Ppu21I | YACGTR | 1 cut(s) | 72 |
| PscI | ACATGT | 1 cut(s) | 666 |
| PshAI | GACNNNNGTC | 1 cut(s) | 235 |
| PshBI | ATTAAT | 3 cut(s) | 939, 1701, 2028 |
| Psp6I | CCWGG | 3 cut(s) | 509, 823, 1125 |
| PspFI | CCCAGC | 1 cut(s) | 287 |
| PspGI | CCWGG | 3 cut(s) | 509, 823, 1125 |
| PspN4I | GGNNCC | 3 cut(s) | 53, 328, 527 |
| PspPI | GGNCC | 3 cut(s) | 526, 827, 999 |
| PstI | CTGCAG | 1 cut(s) | 2458 |
| PsuI | RGATCY | 2 cut(s) | 59, 1380 |
| PvuII | CAGCTG | 2 cut(s) | 94, 2453 |
| RsaI | GTAC | 6 cut(s) | 118, 270, 328, 423, 1098, 1124 |
| RsaNI | GTAC | 6 cut(s) | 117, 269, 327, 422, 1097, 1123 |
| RseI | CAYNNNNRTG | 1 cut(s) | 952 |
| SatI | GCNGC | 7 cut(s) | 95, 1667, 2359, 2391, 2411, 2454, 2463 |
| Sau3AI | GATC | 4 cut(s) | 59, 497, 1380, 2047 |
| Sau96I | GGNCC | 3 cut(s) | 526, 827, 999 |
| SchI | GAGTC | 5 cut(s) | 1453, 1723, 1951, 2320, 2341 |
| ScrFI | CCNGG | 4 cut(s) | 511, 825, 1127, 1345 |
| SduI | GDGCHC | 4 cut(s) | 1345, 1364, 1846, 2154 |
| SfaNI | GCATC | 6 cut(s) | 283, 478, 589, 616, 828, 2221 |
| SfcI | CTRYAG | 1 cut(s) | 2454 |
| SfuI | TTCGAA | 1 cut(s) | 777 |
| SinI | GGWCC | 2 cut(s) | 526, 827 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 952 |
| SmlI | CTYRAG | 1 cut(s) | 515 |
| SmoI | CTYRAG | 1 cut(s) | 515 |
| SspI | AATATT | 2 cut(s) | 863, 1705 |
| SspMI | CTAG | 6 cut(s) | 47, 207, 1367, 2108, 2165, 2195 |
| StyD4I | CCNGG | 4 cut(s) | 509, 823, 1125, 1343 |
| StyI | CCWWGG | 3 cut(s) | 46, 55, 1755 |
| TaaI | ACNGT | 1 cut(s) | 1578 |
| TaiI | ACGT | 6 cut(s) | 74, 653, 687, 776, 1169, 2282 |
| TaqI | TCGA | 9 cut(s) | 42, 777, 882, 1082, 1676, 1717, 1781, 2034, 2046 |
| TaqII | GACCGA | 1 cut(s) | 543 |
| TauI | GCSGC | 2 cut(s) | 1669, 2361 |
| TfiI | GAWTC | 5 cut(s) | 176, 369, 1552, 1894, 2083 |
| TscAI | CASTG | 4 cut(s) | 617, 903, 1041, 2137 |
| TseFI | GTSAC | 4 cut(s) | 646, 2053, 2311, 2344 |
| TseI | GCWGC | 5 cut(s) | 94, 2390, 2410, 2453, 2462 |
| Tsp45I | GTSAC | 4 cut(s) | 646, 2053, 2311, 2344 |
| TspDTI | ATGAA | 6 cut(s) | 149, 536, 761, 1131, 1886, 2106 |
| TspGWI | ACGGA | 4 cut(s) | 362, 989, 1466, 2272 |
| TspRI | CASTG | 4 cut(s) | 617, 903, 1041, 2137 |
| Vha464I | CTTAAG | 1 cut(s) | 515 |
| VpaK11BI | GGWCC | 2 cut(s) | 526, 827 |
| VspI | ATTAAT | 3 cut(s) | 939, 1701, 2028 |
| XapI | RAATTY | 3 cut(s) | 79, 1533, 2186 |
| XbaI | TCTAGA | 1 cut(s) | 1366 |
| XceI | RCATGY | 1 cut(s) | 670 |
| XmaJI | CCTAGG | 1 cut(s) | 46 |
| XmnI | GAANNNNTTC | 1 cut(s) | 783 |
| XspI | CTAG | 6 cut(s) | 47, 207, 1367, 2108, 2165, 2195 |