Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 82 - 204 | 3.4e-21 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 595 |
| AclWI | GGATC | 1 cut(s) | 15 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AcyI | GRCGYC | 1 cut(s) | 294 |
| AfaI | GTAC | 2 cut(s) | 57, 641 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 227, 281 |
| AgsI | TTSAA | 2 cut(s) | 455, 500 |
| Alw21I | GWGCWC | 2 cut(s) | 350, 483 |
| Alw44I | GTGCAC | 1 cut(s) | 479 |
| AlwI | GGATC | 1 cut(s) | 15 |
| ApaLI | GTGCAC | 1 cut(s) | 479 |
| ApeKI | GCWGC | 3 cut(s) | 255, 326, 559 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| BaeGI | GKGCMC | 1 cut(s) | 483 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 47, 80 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BbsI | GAAGAC | 1 cut(s) | 188 |
| Bbv12I | GWGCWC | 2 cut(s) | 350, 483 |
| BbvCI | CCTCAGC | 1 cut(s) | 225 |
| BbvI | GCAGC | 3 cut(s) | 267, 338, 571 |
| BccI | CCATC | 3 cut(s) | 46, 214, 245 |
| BfaI | CTAG | 7 cut(s) | 168, 380, 570, 599, 603, 621, 627 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BisI | GCNGC | 3 cut(s) | 256, 327, 560 |
| BlsI | GCNGC | 3 cut(s) | 257, 328, 561 |
| BpiI | GAAGAC | 1 cut(s) | 188 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 282, 314 |
| BpmI | CTGGAG | 1 cut(s) | 204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 225 |
| BpuEI | CTTGAG | 1 cut(s) | 8 |
| BsaHI | GRCGYC | 1 cut(s) | 294 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 227, 281 |
| Bse1I | ACTGG | 2 cut(s) | 402, 427 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 227, 281 |
| BseMII | CTCAG | 2 cut(s) | 216, 313 |
| BseNI | ACTGG | 2 cut(s) | 402, 427 |
| BseRI | GAGGAG | 1 cut(s) | 297 |
| BseSI | GKGCMC | 1 cut(s) | 483 |
| BseXI | GCAGC | 3 cut(s) | 267, 338, 571 |
| BsgI | GTGCAG | 1 cut(s) | 578 |
| BsiHKAI | GWGCWC | 2 cut(s) | 350, 483 |
| BslFI | GGGAC | 1 cut(s) | 408 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 227, 281 |
| BsmFI | GGGAC | 1 cut(s) | 408 |
| BsmI | GAATGC | 1 cut(s) | 270 |
| Bsp1286I | GDGCHC | 2 cut(s) | 350, 483 |
| Bsp143I | GATC | 2 cut(s) | 7, 629 |
| BspACI | CCGC | 1 cut(s) | 595 |
| BspCNI | CTCAG | 2 cut(s) | 217, 312 |
| BspHI | TCATGA | 1 cut(s) | 118 |
| BspPI | GGATC | 1 cut(s) | 15 |
| BsrI | ACTGG | 2 cut(s) | 402, 427 |
| BssMI | GATC | 2 cut(s) | 7, 629 |
| BssNI | GRCGYC | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 1 cut(s) | 556 |
| BstACI | GRCGYC | 1 cut(s) | 294 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 564 |
| BstDEI | CTNAG | 2 cut(s) | 225, 299 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstKTI | GATC | 2 cut(s) | 10, 632 |
| BstMBI | GATC | 2 cut(s) | 7, 629 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 332, 536, 608, 617 |
| BstNSI | RCATGY | 1 cut(s) | 566 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstSLI | GKGCMC | 1 cut(s) | 483 |
| BstV1I | GCAGC | 3 cut(s) | 267, 338, 571 |
| BstV2I | GAAGAC | 1 cut(s) | 188 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| BtsIMutI | CAGTG | 1 cut(s) | 561 |
| Cac8I | GCNNGC | 1 cut(s) | 564 |
| CciI | TCATGA | 1 cut(s) | 118 |
| CseI | GACGC | 1 cut(s) | 283 |
| Csp6I | GTAC | 2 cut(s) | 56, 640 |
| CviAII | CATG | 5 cut(s) | 11, 119, 210, 323, 563 |
| CviQI | GTAC | 2 cut(s) | 56, 640 |
| DdeI | CTNAG | 2 cut(s) | 225, 299 |
| DpnI | GATC | 2 cut(s) | 9, 631 |
| DpnII | GATC | 2 cut(s) | 7, 629 |
| Ecl136II | GAGCTC | 1 cut(s) | 348 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco53kI | GAGCTC | 1 cut(s) | 348 |
| EcoICRI | GAGCTC | 1 cut(s) | 348 |
| EcoT22I | ATGCAT | 1 cut(s) | 16 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| FaeI | CATG | 5 cut(s) | 14, 122, 213, 326, 566 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 492, 524 |
| FaqI | GGGAC | 1 cut(s) | 408 |
| FatI | CATG | 5 cut(s) | 10, 118, 209, 322, 562 |
| Fnu4HI | GCNGC | 3 cut(s) | 256, 327, 560 |
| FokI | GGATG | 1 cut(s) | 263 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 3 cut(s) | 256, 327, 560 |
| FspBI | CTAG | 7 cut(s) | 168, 380, 570, 599, 603, 621, 627 |
| GluI | GCNGC | 3 cut(s) | 256, 327, 560 |
| GsuI | CTGGAG | 1 cut(s) | 204 |
| HgaI | GACGC | 1 cut(s) | 283 |
| Hin1I | GRCGYC | 1 cut(s) | 294 |
| Hin1II | CATG | 5 cut(s) | 14, 122, 213, 326, 566 |
| HinfI | GANTC | 1 cut(s) | 440 |
| Hpy166II | GTNNAC | 2 cut(s) | 481, 689 |
| Hpy188I | TCNGA | 4 cut(s) | 302, 445, 666, 675 |
| Hpy188III | TCNNGA | 3 cut(s) | 119, 452, 696 |
| Hpy8I | GTNNAC | 2 cut(s) | 481, 689 |
| HpyCH4III | ACNGT | 1 cut(s) | 556 |
| HpyCH4V | TGCA | 7 cut(s) | 14, 162, 326, 335, 362, 481, 559 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 332, 536, 608, 617 |
| HpyF3I | CTNAG | 2 cut(s) | 225, 299 |
| Hsp92I | GRCGYC | 1 cut(s) | 294 |
| Hsp92II | CATG | 5 cut(s) | 14, 122, 213, 326, 566 |
| Kzo9I | GATC | 2 cut(s) | 7, 629 |
| LmnI | GCTCC | 1 cut(s) | 571 |
| LpnPI | CCDG | 6 cut(s) | 234, 354, 383, 408, 622, 666 |
| Lsp1109I | GCAGC | 3 cut(s) | 267, 338, 571 |
| MaeI | CTAG | 7 cut(s) | 168, 380, 570, 599, 603, 621, 627 |
| MaeIII | GTNAC | 1 cut(s) | 550 |
| MalI | GATC | 2 cut(s) | 9, 631 |
| MboI | GATC | 2 cut(s) | 7, 629 |
| MboII | GAAGA | 2 cut(s) | 193, 668 |
| MhlI | GDGCHC | 2 cut(s) | 350, 483 |
| MluCI | AATT | 4 cut(s) | 89, 155, 239, 676 |
| MmeI | TCCRAC | 2 cut(s) | 215, 268 |
| MnlI | CCTC | 7 cut(s) | 32, 220, 228, 275, 284, 308, 385 |
| Mph1103I | ATGCAT | 1 cut(s) | 16 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MseI | TTAA | 2 cut(s) | 17, 242 |
| MspA1I | CMGCKG | 1 cut(s) | 224 |
| Mva1269I | GAATGC | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 332, 536, 608, 617 |
| NdeII | GATC | 2 cut(s) | 7, 629 |
| NlaIII | CATG | 5 cut(s) | 14, 122, 213, 326, 566 |
| NmuCI | GTSAC | 1 cut(s) | 550 |
| NsiI | ATGCAT | 1 cut(s) | 16 |
| NspI | RCATGY | 1 cut(s) | 566 |
| PaeI | GCATGC | 1 cut(s) | 566 |
| PagI | TCATGA | 1 cut(s) | 118 |
| PctI | GAATGC | 1 cut(s) | 270 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PkrI | GCNGC | 3 cut(s) | 257, 328, 561 |
| Psp124BI | GAGCTC | 1 cut(s) | 350 |
| PvuII | CAGCTG | 1 cut(s) | 224 |
| RsaI | GTAC | 2 cut(s) | 57, 641 |
| RsaNI | GTAC | 2 cut(s) | 56, 640 |
| SacI | GAGCTC | 1 cut(s) | 350 |
| SaqAI | TTAA | 2 cut(s) | 17, 242 |
| SatI | GCNGC | 3 cut(s) | 256, 327, 560 |
| Sau3AI | GATC | 2 cut(s) | 7, 629 |
| SduI | GDGCHC | 2 cut(s) | 350, 483 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 1 cut(s) | 23 |
| SmoI | CTYRAG | 1 cut(s) | 23 |
| SphI | GCATGC | 1 cut(s) | 566 |
| Sse9I | AATT | 4 cut(s) | 89, 155, 239, 676 |
| SsiI | CCGC | 1 cut(s) | 595 |
| SspMI | CTAG | 7 cut(s) | 168, 380, 570, 599, 603, 621, 627 |
| SstI | GAGCTC | 1 cut(s) | 350 |
| TaaI | ACNGT | 1 cut(s) | 556 |
| TaqI | TCGA | 2 cut(s) | 438, 523 |
| TasI | AATT | 4 cut(s) | 89, 155, 239, 676 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| Tru1I | TTAA | 2 cut(s) | 17, 242 |
| Tru9I | TTAA | 2 cut(s) | 17, 242 |
| TscAI | CASTG | 1 cut(s) | 561 |
| TseFI | GTSAC | 1 cut(s) | 550 |
| TseI | GCWGC | 3 cut(s) | 255, 326, 559 |
| Tsp45I | GTSAC | 1 cut(s) | 550 |
| TspDTI | ATGAA | 3 cut(s) | 168, 311, 630 |
| TspRI | CASTG | 1 cut(s) | 561 |
| VneI | GTGCAC | 1 cut(s) | 479 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XceI | RCATGY | 1 cut(s) | 566 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 7 cut(s) | 168, 380, 570, 599, 603, 621, 627 |
| Zsp2I | ATGCAT | 1 cut(s) | 16 |