Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 426, 993 |
| AccII | CGCG | 1 cut(s) | 102 |
| AclI | AACGTT | 1 cut(s) | 393 |
| AclWI | GGATC | 3 cut(s) | 36, 67, 87 |
| AcsI | RAATTY | 2 cut(s) | 360, 376 |
| AfaI | GTAC | 4 cut(s) | 172, 285, 444, 591 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 240, 426, 621, 993 |
| AgsI | TTSAA | 7 cut(s) | 51, 381, 389, 634, 683, 856, 892 |
| AjnI | CCWGG | 3 cut(s) | 239, 670, 896 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 712, 744 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 114, 146 |
| AluBI | AGCT | 5 cut(s) | 212, 318, 701, 728, 946 |
| AluI | AGCT | 5 cut(s) | 212, 318, 701, 728, 946 |
| Alw26I | GTCTC | 1 cut(s) | 467 |
| AlwI | GGATC | 3 cut(s) | 36, 67, 87 |
| AoxI | GGCC | 1 cut(s) | 912 |
| ApeKI | GCWGC | 1 cut(s) | 842 |
| ApoI | RAATTY | 2 cut(s) | 360, 376 |
| AsuHPI | GGTGA | 1 cut(s) | 425 |
| BauI | CACGAG | 1 cut(s) | 579 |
| BbsI | GAAGAC | 1 cut(s) | 268 |
| BbvI | GCAGC | 1 cut(s) | 854 |
| BccI | CCATC | 3 cut(s) | 148, 296, 404 |
| BceAI | ACGGC | 1 cut(s) | 579 |
| BciT130I | CCWGG | 3 cut(s) | 241, 672, 898 |
| BciVI | GTATCC | 2 cut(s) | 330, 740 |
| BcoDI | GTCTC | 1 cut(s) | 467 |
| BfuI | GTATCC | 2 cut(s) | 330, 740 |
| BisI | GCNGC | 1 cut(s) | 843 |
| BlsI | GCNGC | 1 cut(s) | 844 |
| BmcAI | AGTACT | 2 cut(s) | 172, 591 |
| Bme1390I | CCNGG | 3 cut(s) | 241, 672, 898 |
| BmiI | GGNNCC | 1 cut(s) | 669 |
| BmrFI | CCNGG | 3 cut(s) | 241, 672, 898 |
| BmsI | GCATC | 2 cut(s) | 94, 214 |
| BpiI | GAAGAC | 1 cut(s) | 268 |
| BpmI | CTGGAG | 2 cut(s) | 262, 300 |
| BsaI | GGTCTC | 1 cut(s) | 467 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 82, 112, 114, 144, 688, 718 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 240, 426, 621, 993 |
| Bse118I | RCCGGY | 2 cut(s) | 178, 370 |
| Bse1I | ACTGG | 3 cut(s) | 96, 134, 266 |
| Bse3DI | GCAATG | 1 cut(s) | 870 |
| BseBI | CCWGG | 3 cut(s) | 241, 672, 898 |
| BseGI | GGATG | 1 cut(s) | 906 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 240, 426, 621, 993 |
| BseMI | GCAATG | 1 cut(s) | 870 |
| BseMII | CTCAG | 4 cut(s) | 60, 462, 525, 607 |
| BseNI | ACTGG | 3 cut(s) | 96, 134, 266 |
| BseRI | GAGGAG | 2 cut(s) | 42, 259 |
| BseXI | GCAGC | 1 cut(s) | 854 |
| BsgI | GTGCAG | 1 cut(s) | 810 |
| Bsh1236I | CGCG | 1 cut(s) | 102 |
| Bsh1285I | CGRYCG | 2 cut(s) | 144, 371 |
| BshFI | GGCC | 1 cut(s) | 914 |
| BsiEI | CGRYCG | 2 cut(s) | 144, 371 |
| BsiSI | CCGG | 3 cut(s) | 179, 206, 371 |
| BslFI | GGGAC | 2 cut(s) | 638, 770 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 240, 426, 621, 993 |
| BsmAI | GTCTC | 1 cut(s) | 467 |
| BsmFI | GGGAC | 2 cut(s) | 638, 770 |
| BsmI | GAATGC | 1 cut(s) | 486 |
| BsnI | GGCC | 1 cut(s) | 914 |
| Bso31I | GGTCTC | 1 cut(s) | 467 |
| Bsp1407I | TGTACA | 1 cut(s) | 442 |
| Bsp143I | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| Bsp68I | TCGCGA | 1 cut(s) | 102 |
| BspANI | GGCC | 1 cut(s) | 914 |
| BspCNI | CTCAG | 4 cut(s) | 61, 463, 526, 606 |
| BspFNI | CGCG | 1 cut(s) | 102 |
| BspLI | GGNNCC | 1 cut(s) | 669 |
| BspPI | GGATC | 3 cut(s) | 36, 67, 87 |
| BspTNI | GGTCTC | 1 cut(s) | 467 |
| BsrDI | GCAATG | 1 cut(s) | 870 |
| BsrFI | RCCGGY | 2 cut(s) | 178, 370 |
| BsrGI | TGTACA | 1 cut(s) | 442 |
| BsrI | ACTGG | 3 cut(s) | 96, 134, 266 |
| BssAI | RCCGGY | 2 cut(s) | 178, 370 |
| BssMI | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| BssSI | CACGAG | 1 cut(s) | 579 |
| Bst2BI | CACGAG | 1 cut(s) | 579 |
| Bst2UI | CCWGG | 3 cut(s) | 241, 672, 898 |
| Bst4CI | ACNGT | 2 cut(s) | 867, 980 |
| Bst6I | CTCTTC | 1 cut(s) | 19 |
| BstAUI | TGTACA | 1 cut(s) | 442 |
| BstC8I | GCNNGC | 2 cut(s) | 180, 276 |
| BstDEI | CTNAG | 4 cut(s) | 69, 471, 534, 593 |
| BstF5I | GGATG | 1 cut(s) | 906 |
| BstFNI | CGCG | 1 cut(s) | 102 |
| BstKTI | GATC | 5 cut(s) | 44, 75, 95, 144, 517 |
| BstMAI | GTCTC | 1 cut(s) | 467 |
| BstMBI | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| BstMCI | CGRYCG | 2 cut(s) | 144, 371 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 698, 839 |
| BstNI | CCWGG | 3 cut(s) | 241, 672, 898 |
| BstNSI | RCATGY | 1 cut(s) | 278 |
| BstSCI | CCNGG | 3 cut(s) | 239, 670, 896 |
| BstUI | CGCG | 1 cut(s) | 102 |
| BstV1I | GCAGC | 1 cut(s) | 854 |
| BstV2I | GAAGAC | 1 cut(s) | 268 |
| BstX2I | RGATCY | 3 cut(s) | 41, 72, 92 |
| BstYI | RGATCY | 3 cut(s) | 41, 72, 92 |
| BsuI | GTATCC | 2 cut(s) | 330, 740 |
| BsuRI | GGCC | 1 cut(s) | 914 |
| BtsCI | GGATG | 1 cut(s) | 906 |
| BtsIMutI | CAGTG | 1 cut(s) | 559 |
| BtuMI | TCGCGA | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 2 cut(s) | 180, 276 |
| Cfr10I | RCCGGY | 2 cut(s) | 178, 370 |
| CseI | GACGC | 1 cut(s) | 54 |
| Csp6I | GTAC | 4 cut(s) | 171, 284, 443, 590 |
| CviAII | CATG | 9 cut(s) | 151, 275, 434, 620, 693, 883, 929, 952, 988 |
| CviJI | RGCY | 9 cut(s) | 212, 318, 505, 532, 637, 701, 728, 914, 946 |
| CviKI_1 | RGCY | 9 cut(s) | 212, 318, 505, 532, 637, 701, 728, 914, 946 |
| CviQI | GTAC | 4 cut(s) | 171, 284, 443, 590 |
| DdeI | CTNAG | 4 cut(s) | 69, 471, 534, 593 |
| DpnI | GATC | 5 cut(s) | 43, 74, 94, 143, 516 |
| DpnII | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| Eam1104I | CTCTTC | 1 cut(s) | 19 |
| EarI | CTCTTC | 1 cut(s) | 19 |
| Eco147I | AGGCCT | 1 cut(s) | 914 |
| Eco31I | GGTCTC | 1 cut(s) | 467 |
| EcoRI | GAATTC | 1 cut(s) | 360 |
| EcoRII | CCWGG | 3 cut(s) | 239, 670, 896 |
| EcoT22I | ATGCAT | 1 cut(s) | 694 |
| FaeI | CATG | 9 cut(s) | 154, 278, 437, 623, 696, 886, 932, 955, 991 |
| FaqI | GGGAC | 2 cut(s) | 638, 770 |
| FatI | CATG | 9 cut(s) | 150, 274, 433, 619, 692, 882, 928, 951, 987 |
| Fnu4HI | GCNGC | 1 cut(s) | 843 |
| FokI | GGATG | 1 cut(s) | 913 |
| Fsp4HI | GCNGC | 1 cut(s) | 843 |
| GluI | GCNGC | 1 cut(s) | 843 |
| GsuI | CTGGAG | 2 cut(s) | 262, 300 |
| HaeIII | GGCC | 1 cut(s) | 914 |
| HapII | CCGG | 3 cut(s) | 179, 206, 371 |
| HgaI | GACGC | 1 cut(s) | 54 |
| Hin1II | CATG | 9 cut(s) | 154, 278, 437, 623, 696, 886, 932, 955, 991 |
| HindIII | AAGCTT | 3 cut(s) | 316, 726, 944 |
| HinfI | GANTC | 5 cut(s) | 34, 125, 626, 957, 966 |
| HpaII | CCGG | 3 cut(s) | 179, 206, 371 |
| HphI | GGTGA | 1 cut(s) | 425 |
| Hpy166II | GTNNAC | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 4 cut(s) | 70, 90, 141, 400 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 581, 655, 970 |
| Hpy8I | GTNNAC | 1 cut(s) | 445 |
| HpyAV | CCTTC | 6 cut(s) | 240, 244, 319, 495, 779, 862 |
| HpyCH4III | ACNGT | 2 cut(s) | 867, 980 |
| HpyCH4IV | ACGT | 1 cut(s) | 393 |
| HpyCH4V | TGCA | 7 cut(s) | 85, 274, 486, 692, 827, 875, 925 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 698, 839 |
| HpyF3I | CTNAG | 4 cut(s) | 69, 471, 534, 593 |
| HpySE526I | ACGT | 1 cut(s) | 393 |
| Hsp92II | CATG | 9 cut(s) | 154, 278, 437, 623, 696, 886, 932, 955, 991 |
| KroI | GCCGGC | 1 cut(s) | 178 |
| KroNI | GCCGGC | 1 cut(s) | 180 |
| Kzo9I | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 854 |
| LweI | GCATC | 2 cut(s) | 94, 214 |
| MaeII | ACGT | 1 cut(s) | 393 |
| MaeIII | GTNAC | 3 cut(s) | 413, 581, 704 |
| MalI | GATC | 5 cut(s) | 43, 74, 94, 143, 516 |
| MboI | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| MboII | GAAGA | 6 cut(s) | 36, 51, 273, 524, 803, 985 |
| MfeI | CAATTG | 1 cut(s) | 763 |
| MflI | RGATCY | 3 cut(s) | 41, 72, 92 |
| MluCI | AATT | 8 cut(s) | 343, 360, 376, 405, 709, 763, 834, 856 |
| MlyI | GAGTC | 2 cut(s) | 43, 620 |
| MmeI | TCCRAC | 2 cut(s) | 100, 885 |
| MnlI | CCTC | 7 cut(s) | 14, 20, 158, 237, 360, 625, 858 |
| Mph1103I | ATGCAT | 1 cut(s) | 694 |
| MreI | CGCCGGCG | 1 cut(s) | 178 |
| MroNI | GCCGGC | 1 cut(s) | 178 |
| MseI | TTAA | 3 cut(s) | 494, 558, 917 |
| MspI | CCGG | 3 cut(s) | 179, 206, 371 |
| MspR9I | CCNGG | 3 cut(s) | 241, 672, 898 |
| MunI | CAATTG | 1 cut(s) | 763 |
| Mva1269I | GAATGC | 1 cut(s) | 486 |
| MvaI | CCWGG | 3 cut(s) | 241, 672, 898 |
| MvnI | CGCG | 1 cut(s) | 102 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 698, 839 |
| NaeI | GCCGGC | 1 cut(s) | 180 |
| NdeII | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| NgoMIV | GCCGGC | 1 cut(s) | 178 |
| NlaIII | CATG | 9 cut(s) | 154, 278, 437, 623, 696, 886, 932, 955, 991 |
| NlaIV | GGNNCC | 1 cut(s) | 669 |
| NmuCI | GTSAC | 2 cut(s) | 413, 581 |
| NruI | TCGCGA | 1 cut(s) | 102 |
| NsiI | ATGCAT | 1 cut(s) | 694 |
| NspI | RCATGY | 1 cut(s) | 278 |
| PaeI | GCATGC | 1 cut(s) | 278 |
| PceI | AGGCCT | 1 cut(s) | 914 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 43, 364 |
| PctI | GAATGC | 1 cut(s) | 486 |
| PdiI | GCCGGC | 1 cut(s) | 180 |
| PfeI | GAWTC | 3 cut(s) | 125, 957, 966 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 426, 993 |
| PfoI | TCCNGGA | 2 cut(s) | 239, 670 |
| PkrI | GCNGC | 1 cut(s) | 844 |
| Ple19I | CGATCG | 1 cut(s) | 144 |
| PleI | GAGTC | 2 cut(s) | 42, 620 |
| PpsI | GAGTC | 2 cut(s) | 42, 620 |
| Psp1406I | AACGTT | 1 cut(s) | 393 |
| Psp6I | CCWGG | 3 cut(s) | 239, 670, 896 |
| PspGI | CCWGG | 3 cut(s) | 239, 670, 896 |
| PspN4I | GGNNCC | 1 cut(s) | 669 |
| PsuI | RGATCY | 3 cut(s) | 41, 72, 92 |
| PvuI | CGATCG | 1 cut(s) | 144 |
| RruI | TCGCGA | 1 cut(s) | 102 |
| RsaI | GTAC | 4 cut(s) | 172, 285, 444, 591 |
| RsaNI | GTAC | 4 cut(s) | 171, 284, 443, 590 |
| SaqAI | TTAA | 3 cut(s) | 494, 558, 917 |
| SatI | GCNGC | 1 cut(s) | 843 |
| Sau3AI | GATC | 5 cut(s) | 41, 72, 92, 141, 514 |
| ScaI | AGTACT | 2 cut(s) | 172, 591 |
| SchI | GAGTC | 2 cut(s) | 43, 620 |
| ScrFI | CCNGG | 3 cut(s) | 241, 672, 898 |
| SfaNI | GCATC | 2 cut(s) | 94, 214 |
| SgrAI | CRCCGGYG | 1 cut(s) | 178 |
| SphI | GCATGC | 1 cut(s) | 278 |
| Sse9I | AATT | 8 cut(s) | 343, 360, 376, 405, 709, 763, 834, 856 |
| SseBI | AGGCCT | 1 cut(s) | 914 |
| StuI | AGGCCT | 1 cut(s) | 914 |
| StyD4I | CCNGG | 3 cut(s) | 239, 670, 896 |
| TaaI | ACNGT | 2 cut(s) | 867, 980 |
| TaiI | ACGT | 1 cut(s) | 396 |
| TaqI | TCGA | 5 cut(s) | 37, 358, 367, 599, 862 |
| TasI | AATT | 8 cut(s) | 343, 360, 376, 405, 709, 763, 834, 856 |
| TatI | WGTACW | 4 cut(s) | 170, 283, 442, 589 |
| TfiI | GAWTC | 3 cut(s) | 125, 957, 966 |
| Tru1I | TTAA | 3 cut(s) | 494, 558, 917 |
| Tru9I | TTAA | 3 cut(s) | 494, 558, 917 |
| TscAI | CASTG | 1 cut(s) | 559 |
| TseFI | GTSAC | 2 cut(s) | 413, 581 |
| TseI | GCWGC | 1 cut(s) | 842 |
| Tsp45I | GTSAC | 2 cut(s) | 413, 581 |
| TspDTI | ATGAA | 4 cut(s) | 353, 525, 804, 945 |
| TspRI | CASTG | 1 cut(s) | 559 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 426, 993 |
| XapI | RAATTY | 2 cut(s) | 360, 376 |
| XceI | RCATGY | 1 cut(s) | 278 |
| ZrmI | AGTACT | 2 cut(s) | 172, 591 |
| Zsp2I | ATGCAT | 1 cut(s) | 694 |