Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1027, 1069 |
| AccI | GTMKAC | 1 cut(s) | 190 |
| AciI | CCGC | 2 cut(s) | 89, 1032 |
| AclWI | GGATC | 1 cut(s) | 547 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcsI | RAATTY | 2 cut(s) | 373, 829 |
| AcuI | CTGAAG | 2 cut(s) | 887, 894 |
| AfaI | GTAC | 4 cut(s) | 299, 391, 624, 1151 |
| AflIII | ACRYGT | 1 cut(s) | 1204 |
| AgeI | ACCGGT | 1 cut(s) | 208 |
| AgsI | TTSAA | 8 cut(s) | 25, 115, 200, 217, 332, 400, 884, 1174 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 277, 309 |
| AluBI | AGCT | 6 cut(s) | 152, 463, 474, 934, 1194, 1213 |
| AluI | AGCT | 6 cut(s) | 152, 463, 474, 934, 1194, 1213 |
| Alw26I | GTCTC | 1 cut(s) | 716 |
| AlwI | GGATC | 1 cut(s) | 547 |
| AoxI | GGCC | 3 cut(s) | 57, 311, 543 |
| ApeKI | GCWGC | 2 cut(s) | 518, 788 |
| ApoI | RAATTY | 2 cut(s) | 373, 829 |
| AsiGI | ACCGGT | 1 cut(s) | 208 |
| AsuHPI | GGTGA | 4 cut(s) | 254, 347, 710, 737 |
| BaeGI | GKGCMC | 1 cut(s) | 764 |
| BalI | TGGCCA | 1 cut(s) | 59 |
| BbvI | GCAGC | 2 cut(s) | 505, 800 |
| BccI | CCATC | 4 cut(s) | 63, 239, 1082, 1229 |
| BclI | TGATCA | 2 cut(s) | 78, 352 |
| BcoDI | GTCTC | 1 cut(s) | 716 |
| BfaI | CTAG | 2 cut(s) | 158, 1011 |
| BfmI | CTRYAG | 1 cut(s) | 786 |
| BfuAI | ACCTGC | 2 cut(s) | 1027, 1069 |
| BisI | GCNGC | 2 cut(s) | 519, 789 |
| BlsI | GCNGC | 2 cut(s) | 520, 790 |
| BmcAI | AGTACT | 1 cut(s) | 391 |
| BmiI | GGNNCC | 2 cut(s) | 168, 677 |
| BmrI | ACTGGG | 1 cut(s) | 523 |
| BmsI | GCATC | 1 cut(s) | 262 |
| BmuI | ACTGGG | 1 cut(s) | 523 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 418, 450, 660, 692, 1119, 1151 |
| BpuEI | CTTGAG | 1 cut(s) | 1013 |
| BsaJI | CCNNGG | 1 cut(s) | 546 |
| BsaWI | WCCGGW | 1 cut(s) | 208 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 155, 185, 226, 256, 631, 661 |
| Bse118I | RCCGGY | 1 cut(s) | 208 |
| Bse1I | ACTGG | 2 cut(s) | 518, 1178 |
| Bse3DI | GCAATG | 3 cut(s) | 57, 765, 1041 |
| BseDI | CCNNGG | 1 cut(s) | 546 |
| BseGI | GGATG | 3 cut(s) | 74, 81, 849 |
| BseMI | GCAATG | 3 cut(s) | 57, 765, 1041 |
| BseMII | CTCAG | 2 cut(s) | 119, 416 |
| BseNI | ACTGG | 2 cut(s) | 518, 1178 |
| BseRI | GAGGAG | 3 cut(s) | 199, 668, 704 |
| BseSI | GKGCMC | 1 cut(s) | 764 |
| BseXI | GCAGC | 2 cut(s) | 505, 800 |
| BshFI | GGCC | 3 cut(s) | 59, 313, 545 |
| BshTI | ACCGGT | 1 cut(s) | 208 |
| BsiSI | CCGG | 1 cut(s) | 209 |
| BslFI | GGGAC | 1 cut(s) | 540 |
| BsmAI | GTCTC | 1 cut(s) | 716 |
| BsmFI | GGGAC | 1 cut(s) | 540 |
| BsmI | GAATGC | 1 cut(s) | 429 |
| BsnI | GGCC | 3 cut(s) | 59, 313, 545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 764 |
| Bsp143I | GATC | 4 cut(s) | 78, 343, 352, 539 |
| BspACI | CCGC | 2 cut(s) | 89, 1032 |
| BspANI | GGCC | 3 cut(s) | 59, 313, 545 |
| BspCNI | CTCAG | 2 cut(s) | 118, 417 |
| BspLI | GGNNCC | 2 cut(s) | 168, 677 |
| BspMAI | CTGCAG | 1 cut(s) | 790 |
| BspMI | ACCTGC | 2 cut(s) | 1027, 1069 |
| BspPI | GGATC | 1 cut(s) | 547 |
| BsrDI | GCAATG | 3 cut(s) | 57, 765, 1041 |
| BsrFI | RCCGGY | 1 cut(s) | 208 |
| BsrI | ACTGG | 2 cut(s) | 518, 1178 |
| BssAI | RCCGGY | 1 cut(s) | 208 |
| BssECI | CCNNGG | 1 cut(s) | 546 |
| BssMI | GATC | 4 cut(s) | 78, 343, 352, 539 |
| BssNAI | GTATAC | 1 cut(s) | 191 |
| BssT1I | CCWWGG | 1 cut(s) | 546 |
| Bst1107I | GTATAC | 1 cut(s) | 191 |
| Bst4CI | ACNGT | 3 cut(s) | 499, 795, 958 |
| Bst6I | CTCTTC | 1 cut(s) | 864 |
| BstC8I | GCNNGC | 1 cut(s) | 1032 |
| BstDEI | CTNAG | 3 cut(s) | 105, 315, 425 |
| BstEII | GGTNACC | 1 cut(s) | 566 |
| BstF5I | GGATG | 3 cut(s) | 74, 81, 849 |
| BstKTI | GATC | 4 cut(s) | 81, 346, 355, 542 |
| BstMAI | GTCTC | 1 cut(s) | 716 |
| BstMBI | GATC | 4 cut(s) | 78, 343, 352, 539 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 460, 515, 1036 |
| BstNSI | RCATGY | 1 cut(s) | 1208 |
| BstPI | GGTNACC | 1 cut(s) | 566 |
| BstSFI | CTRYAG | 1 cut(s) | 786 |
| BstSLI | GKGCMC | 1 cut(s) | 764 |
| BstV1I | GCAGC | 2 cut(s) | 505, 800 |
| BstZ17I | GTATAC | 1 cut(s) | 191 |
| BsuRI | GGCC | 3 cut(s) | 59, 313, 545 |
| BtsCI | GGATG | 3 cut(s) | 74, 81, 849 |
| BtsI | GCAGTG | 1 cut(s) | 738 |
| BtsIMutI | CAGTG | 2 cut(s) | 495, 738 |
| BveI | ACCTGC | 2 cut(s) | 1027, 1069 |
| Cac8I | GCNNGC | 1 cut(s) | 1032 |
| Cfr10I | RCCGGY | 1 cut(s) | 208 |
| CseI | GACGC | 1 cut(s) | 369 |
| Csp6I | GTAC | 4 cut(s) | 298, 390, 623, 1150 |
| CspAI | ACCGGT | 1 cut(s) | 208 |
| CviAII | CATG | 7 cut(s) | 11, 16, 276, 369, 664, 725, 1205 |
| CviQI | GTAC | 4 cut(s) | 298, 390, 623, 1150 |
| DdeI | CTNAG | 3 cut(s) | 105, 315, 425 |
| DpnI | GATC | 4 cut(s) | 80, 345, 354, 541 |
| DpnII | GATC | 4 cut(s) | 78, 343, 352, 539 |
| DraI | TTTAAA | 2 cut(s) | 577, 828 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 1 cut(s) | 864 |
| EarI | CTCTTC | 1 cut(s) | 864 |
| Eco130I | CCWWGG | 1 cut(s) | 546 |
| Eco147I | AGGCCT | 1 cut(s) | 313 |
| Eco32I | GATATC | 1 cut(s) | 967 |
| Eco57I | CTGAAG | 2 cut(s) | 887, 894 |
| Eco91I | GGTNACC | 1 cut(s) | 566 |
| EcoO65I | GGTNACC | 1 cut(s) | 566 |
| EcoRV | GATATC | 1 cut(s) | 967 |
| EcoT14I | CCWWGG | 1 cut(s) | 546 |
| EcoT22I | ATGCAT | 1 cut(s) | 277 |
| ErhI | CCWWGG | 1 cut(s) | 546 |
| FaeI | CATG | 7 cut(s) | 14, 19, 279, 372, 667, 728, 1208 |
| FaqI | GGGAC | 1 cut(s) | 540 |
| FatI | CATG | 7 cut(s) | 10, 15, 275, 368, 663, 724, 1204 |
| FauI | CCCGC | 1 cut(s) | 1039 |
| FbaI | TGATCA | 2 cut(s) | 78, 352 |
| FblI | GTMKAC | 1 cut(s) | 190 |
| Fnu4HI | GCNGC | 2 cut(s) | 519, 789 |
| FokI | GGATG | 3 cut(s) | 81, 88, 856 |
| Fsp4HI | GCNGC | 2 cut(s) | 519, 789 |
| FspBI | CTAG | 2 cut(s) | 158, 1011 |
| GluI | GCNGC | 2 cut(s) | 519, 789 |
| HaeIII | GGCC | 3 cut(s) | 59, 313, 545 |
| HapII | CCGG | 1 cut(s) | 209 |
| HgaI | GACGC | 1 cut(s) | 369 |
| Hin1II | CATG | 7 cut(s) | 14, 19, 279, 372, 667, 728, 1208 |
| HincII | GTYRAC | 1 cut(s) | 1183 |
| HindII | GTYRAC | 1 cut(s) | 1183 |
| HinfI | GANTC | 2 cut(s) | 28, 280 |
| HpaI | GTTAAC | 1 cut(s) | 1183 |
| HpaII | CCGG | 1 cut(s) | 209 |
| HphI | GGTGA | 4 cut(s) | 254, 347, 710, 737 |
| Hpy166II | GTNNAC | 4 cut(s) | 191, 259, 1016, 1183 |
| Hpy188I | TCNGA | 5 cut(s) | 108, 426, 867, 1005, 1139 |
| Hpy188III | TCNNGA | 3 cut(s) | 25, 773, 1054 |
| Hpy8I | GTNNAC | 4 cut(s) | 191, 259, 1016, 1183 |
| HpyAV | CCTTC | 6 cut(s) | 194, 303, 585, 862, 1000, 1223 |
| HpyCH4III | ACNGT | 3 cut(s) | 499, 795, 958 |
| HpyCH4IV | ACGT | 1 cut(s) | 326 |
| HpyCH4V | TGCA | 8 cut(s) | 10, 275, 454, 509, 521, 788, 952, 1039 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 460, 515, 1036 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 315, 425 |
| HpySE526I | ACGT | 1 cut(s) | 326 |
| Hsp92II | CATG | 7 cut(s) | 14, 19, 279, 372, 667, 728, 1208 |
| Ksp22I | TGATCA | 2 cut(s) | 78, 352 |
| KspAI | GTTAAC | 1 cut(s) | 1183 |
| Kzo9I | GATC | 4 cut(s) | 78, 343, 352, 539 |
| LmnI | GCTCC | 5 cut(s) | 172, 471, 681, 850, 1091 |
| Lsp1109I | GCAGC | 2 cut(s) | 505, 800 |
| LweI | GCATC | 1 cut(s) | 262 |
| MaeI | CTAG | 2 cut(s) | 158, 1011 |
| MaeII | ACGT | 1 cut(s) | 326 |
| MaeIII | GTNAC | 6 cut(s) | 409, 443, 566, 647, 689, 958 |
| MalI | GATC | 4 cut(s) | 80, 345, 354, 541 |
| MboI | GATC | 4 cut(s) | 78, 343, 352, 539 |
| MboII | GAAGA | 3 cut(s) | 484, 552, 851 |
| MfeI | CAATTG | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 764 |
| MlsI | TGGCCA | 1 cut(s) | 59 |
| MluCI | AATT | 6 cut(s) | 43, 133, 237, 286, 373, 829 |
| MluNI | TGGCCA | 1 cut(s) | 59 |
| MmeI | TCCRAC | 2 cut(s) | 828, 1105 |
| Mox20I | TGGCCA | 1 cut(s) | 59 |
| Mph1103I | ATGCAT | 1 cut(s) | 277 |
| MscI | TGGCCA | 1 cut(s) | 59 |
| MseI | TTAA | 5 cut(s) | 576, 827, 834, 1079, 1182 |
| MslI | CAYNNNNRTG | 2 cut(s) | 630, 729 |
| Msp20I | TGGCCA | 1 cut(s) | 59 |
| MspI | CCGG | 1 cut(s) | 209 |
| MunI | CAATTG | 1 cut(s) | 133 |
| Mva1269I | GAATGC | 1 cut(s) | 429 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 460, 515, 1036 |
| NdeII | GATC | 4 cut(s) | 78, 343, 352, 539 |
| NlaIII | CATG | 7 cut(s) | 14, 19, 279, 372, 667, 728, 1208 |
| NlaIV | GGNNCC | 2 cut(s) | 168, 677 |
| NsiI | ATGCAT | 1 cut(s) | 277 |
| NspI | RCATGY | 1 cut(s) | 1208 |
| PceI | AGGCCT | 1 cut(s) | 313 |
| PciI | ACATGT | 1 cut(s) | 1204 |
| PctI | GAATGC | 1 cut(s) | 429 |
| PfeI | GAWTC | 2 cut(s) | 28, 280 |
| PinAI | ACCGGT | 1 cut(s) | 208 |
| PkrI | GCNGC | 2 cut(s) | 520, 790 |
| PscI | ACATGT | 1 cut(s) | 1204 |
| PspEI | GGTNACC | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 2 cut(s) | 168, 677 |
| PstI | CTGCAG | 1 cut(s) | 790 |
| RsaI | GTAC | 4 cut(s) | 299, 391, 624, 1151 |
| RsaNI | GTAC | 4 cut(s) | 298, 390, 623, 1150 |
| RseI | CAYNNNNRTG | 2 cut(s) | 630, 729 |
| SaqAI | TTAA | 5 cut(s) | 576, 827, 834, 1079, 1182 |
| SatI | GCNGC | 2 cut(s) | 519, 789 |
| Sau3AI | GATC | 4 cut(s) | 78, 343, 352, 539 |
| ScaI | AGTACT | 1 cut(s) | 391 |
| SduI | GDGCHC | 1 cut(s) | 764 |
| SfaNI | GCATC | 1 cut(s) | 262 |
| SfcI | CTRYAG | 1 cut(s) | 786 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 630, 729 |
| SmlI | CTYRAG | 1 cut(s) | 992 |
| SmoI | CTYRAG | 1 cut(s) | 992 |
| Sse9I | AATT | 6 cut(s) | 43, 133, 237, 286, 373, 829 |
| SseBI | AGGCCT | 1 cut(s) | 313 |
| SsiI | CCGC | 2 cut(s) | 89, 1032 |
| SspMI | CTAG | 2 cut(s) | 158, 1011 |
| StuI | AGGCCT | 1 cut(s) | 313 |
| StyI | CCWWGG | 1 cut(s) | 546 |
| TaaI | ACNGT | 3 cut(s) | 499, 795, 958 |
| TaiI | ACGT | 1 cut(s) | 329 |
| TaqI | TCGA | 2 cut(s) | 922, 1086 |
| TasI | AATT | 6 cut(s) | 43, 133, 237, 286, 373, 829 |
| TatI | WGTACW | 2 cut(s) | 389, 622 |
| TfiI | GAWTC | 2 cut(s) | 28, 280 |
| Tru1I | TTAA | 5 cut(s) | 576, 827, 834, 1079, 1182 |
| Tru9I | TTAA | 5 cut(s) | 576, 827, 834, 1079, 1182 |
| TscAI | CASTG | 2 cut(s) | 502, 745 |
| TseI | GCWGC | 2 cut(s) | 518, 788 |
| TspDTI | ATGAA | 6 cut(s) | 17, 492, 695, 789, 851, 1088 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| TspRI | CASTG | 2 cut(s) | 502, 745 |
| XapI | RAATTY | 2 cut(s) | 373, 829 |
| XceI | RCATGY | 1 cut(s) | 1208 |
| XmiI | GTMKAC | 1 cut(s) | 190 |
| XspI | CTAG | 2 cut(s) | 158, 1011 |
| ZrmI | AGTACT | 1 cut(s) | 391 |
| Zsp2I | ATGCAT | 1 cut(s) | 277 |