ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 615 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 555, 751 |
| AccBSI | CCGCTC | 1 cut(s) | 792 |
| AciI | CCGC | 2 cut(s) | 103, 790 |
| AclWI | GGATC | 3 cut(s) | 63, 772, 785 |
| AcoI | YGGCCR | 1 cut(s) | 546 |
| AcuI | CTGAAG | 3 cut(s) | 147, 174, 789 |
| AdeI | CACNNNGTG | 1 cut(s) | 434 |
| AfaI | GTAC | 1 cut(s) | 834 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 73, 74, 555, 751, 829 |
| AgsI | TTSAA | 3 cut(s) | 40, 360, 664 |
| AjnI | CCWGG | 4 cut(s) | 50, 567, 744, 781 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 248, 280 |
| AluBI | AGCT | 5 cut(s) | 237, 283, 287, 354, 803 |
| AluI | AGCT | 5 cut(s) | 237, 283, 287, 354, 803 |
| Alw26I | GTCTC | 4 cut(s) | 25, 247, 341, 704 |
| AlwI | GGATC | 3 cut(s) | 63, 772, 785 |
| Ama87I | CYCGRG | 1 cut(s) | 67 |
| AoxI | GGCC | 4 cut(s) | 546, 742, 785, 808 |
| ApaI | GGGCCC | 1 cut(s) | 789 |
| ApeKI | GCWGC | 1 cut(s) | 61 |
| AseI | ATTAAT | 1 cut(s) | 222 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 500 |
| AspS9I | GGNCC | 3 cut(s) | 655, 785, 786 |
| AsuC2I | CCSGG | 2 cut(s) | 68, 69 |
| AsuHPI | GGTGA | 3 cut(s) | 575, 760, 809 |
| AsuII | TTCGAA | 1 cut(s) | 504 |
| AsuNHI | GCTAGC | 1 cut(s) | 283 |
| AvaI | CYCGRG | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 655 |
| BaeGI | GKGCMC | 1 cut(s) | 789 |
| BalI | TGGCCA | 1 cut(s) | 548 |
| BamHI | GGATCC | 1 cut(s) | 777 |
| BanII | GRGCYC | 2 cut(s) | 51, 789 |
| BbvI | GCAGC | 1 cut(s) | 48 |
| BccI | CCATC | 6 cut(s) | 408, 538, 688, 745, 754, 823 |
| BceAI | ACGGC | 1 cut(s) | 219 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 53, 87, 504, 538 |
| BciT130I | CCWGG | 4 cut(s) | 52, 569, 746, 783 |
| BcnI | CCSGG | 2 cut(s) | 68, 69 |
| BcoDI | GTCTC | 4 cut(s) | 25, 247, 341, 704 |
| BfaI | CTAG | 2 cut(s) | 138, 284 |
| BglII | AGATCT | 1 cut(s) | 183 |
| BisI | GCNGC | 1 cut(s) | 62 |
| BlsI | GCNGC | 1 cut(s) | 63 |
| Bme1390I | CCNGG | 6 cut(s) | 52, 68, 69, 569, 746, 783 |
| Bme18I | GGWCC | 1 cut(s) | 655 |
| BmeT110I | CYCGRG | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 3 cut(s) | 655, 785, 786 |
| BmiI | GGNNCC | 3 cut(s) | 779, 787, 788 |
| BmrFI | CCNGG | 6 cut(s) | 52, 68, 69, 569, 746, 783 |
| BmsI | GCATC | 1 cut(s) | 544 |
| BmtI | GCTAGC | 1 cut(s) | 287 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| Bpu14I | TTCGAA | 1 cut(s) | 504 |
| BpuEI | CTTGAG | 2 cut(s) | 191, 723 |
| BpuMI | CCSGG | 2 cut(s) | 68, 69 |
| BsaI | GGTCTC | 2 cut(s) | 341, 704 |
| BsaJI | CCNNGG | 7 cut(s) | 50, 51, 67, 201, 568, 781, 782 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 73, 74, 555, 751, 829 |
| Bse1I | ACTGG | 2 cut(s) | 282, 658 |
| BseBI | CCWGG | 4 cut(s) | 52, 569, 746, 783 |
| BseDI | CCNNGG | 7 cut(s) | 50, 51, 67, 201, 568, 781, 782 |
| BseGI | GGATG | 3 cut(s) | 419, 699, 834 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 73, 74, 555, 751, 829 |
| BseMII | CTCAG | 2 cut(s) | 182, 336 |
| BseNI | ACTGG | 2 cut(s) | 282, 658 |
| BseRI | GAGGAG | 2 cut(s) | 107, 173 |
| BseSI | GKGCMC | 1 cut(s) | 789 |
| BseXI | GCAGC | 1 cut(s) | 48 |
| BsgI | GTGCAG | 2 cut(s) | 47, 106 |
| BshFI | GGCC | 4 cut(s) | 548, 744, 787, 810 |
| BsiHKCI | CYCGRG | 1 cut(s) | 67 |
| BsiSI | CCGG | 1 cut(s) | 68 |
| BslFI | GGGAC | 3 cut(s) | 104, 434, 603 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 73, 74, 555, 751, 829 |
| BsmAI | GTCTC | 4 cut(s) | 25, 247, 341, 704 |
| BsmFI | GGGAC | 3 cut(s) | 104, 434, 603 |
| BsmI | GAATGC | 1 cut(s) | 170 |
| BsnI | GGCC | 4 cut(s) | 548, 744, 787, 810 |
| Bso31I | GGTCTC | 2 cut(s) | 341, 704 |
| BsoBI | CYCGRG | 1 cut(s) | 67 |
| Bsp119I | TTCGAA | 1 cut(s) | 504 |
| Bsp120I | GGGCCC | 1 cut(s) | 785 |
| Bsp1286I | GDGCHC | 2 cut(s) | 51, 789 |
| Bsp143I | GATC | 3 cut(s) | 55, 183, 777 |
| BspACI | CCGC | 2 cut(s) | 103, 790 |
| BspANI | GGCC | 4 cut(s) | 548, 744, 787, 810 |
| BspCNI | CTCAG | 2 cut(s) | 183, 337 |
| BspLI | GGNNCC | 3 cut(s) | 779, 787, 788 |
| BspOI | GCTAGC | 1 cut(s) | 287 |
| BspPI | GGATC | 3 cut(s) | 63, 772, 785 |
| BspT104I | TTCGAA | 1 cut(s) | 504 |
| BspTNI | GGTCTC | 2 cut(s) | 341, 704 |
| BsrBI | CCGCTC | 1 cut(s) | 792 |
| BsrI | ACTGG | 2 cut(s) | 282, 658 |
| BssECI | CCNNGG | 7 cut(s) | 50, 51, 67, 201, 568, 781, 782 |
| BssMI | GATC | 3 cut(s) | 55, 183, 777 |
| Bst2UI | CCWGG | 4 cut(s) | 52, 569, 746, 783 |
| Bst4CI | ACNGT | 4 cut(s) | 8, 19, 466, 733 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 395 |
| BstBI | TTCGAA | 1 cut(s) | 504 |
| BstC8I | GCNNGC | 3 cut(s) | 285, 442, 597 |
| BstDEI | CTNAG | 3 cut(s) | 191, 345, 431 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstEII | GGTNACC | 1 cut(s) | 563 |
| BstF5I | GGATG | 3 cut(s) | 419, 699, 834 |
| BstKTI | GATC | 3 cut(s) | 58, 186, 780 |
| BstMAI | GTCTC | 4 cut(s) | 25, 247, 341, 704 |
| BstMBI | GATC | 3 cut(s) | 55, 183, 777 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 280, 677, 686 |
| BstNI | CCWGG | 4 cut(s) | 52, 569, 746, 783 |
| BstPI | GGTNACC | 1 cut(s) | 563 |
| BstSCI | CCNGG | 6 cut(s) | 50, 66, 67, 567, 744, 781 |
| BstSLI | GKGCMC | 1 cut(s) | 789 |
| BstV1I | GCAGC | 1 cut(s) | 48 |
| BstX2I | RGATCY | 3 cut(s) | 55, 183, 777 |
| BstYI | RGATCY | 3 cut(s) | 55, 183, 777 |
| BsuRI | GGCC | 4 cut(s) | 548, 744, 787, 810 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtsCI | GGATG | 3 cut(s) | 419, 699, 834 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| Cac8I | GCNNGC | 3 cut(s) | 285, 442, 597 |
| Cfr13I | GGNCC | 3 cut(s) | 655, 785, 786 |
| Cfr9I | CCCGGG | 1 cut(s) | 67 |
| Csp6I | GTAC | 1 cut(s) | 833 |
| CviAII | CATG | 4 cut(s) | 320, 527, 600, 668 |
| CviQI | GTAC | 1 cut(s) | 833 |
| DdeI | CTNAG | 3 cut(s) | 191, 345, 431 |
| DpnI | GATC | 3 cut(s) | 57, 185, 779 |
| DpnII | GATC | 3 cut(s) | 55, 183, 777 |
| DraIII | CACNNNGTG | 1 cut(s) | 434 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 615 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 615 |
| EaeI | YGGCCR | 1 cut(s) | 546 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 395 |
| EarI | CTCTTC | 2 cut(s) | 150, 395 |
| Eco24I | GRGCYC | 2 cut(s) | 51, 789 |
| Eco31I | GGTCTC | 2 cut(s) | 341, 704 |
| Eco47I | GGWCC | 1 cut(s) | 655 |
| Eco57I | CTGAAG | 3 cut(s) | 147, 174, 789 |
| Eco88I | CYCGRG | 1 cut(s) | 67 |
| Eco91I | GGTNACC | 1 cut(s) | 563 |
| EcoO109I | RGGNCCY | 1 cut(s) | 786 |
| EcoO65I | GGTNACC | 1 cut(s) | 563 |
| EcoRII | CCWGG | 4 cut(s) | 50, 567, 744, 781 |
| EcoT22I | ATGCAT | 1 cut(s) | 537 |
| EcoT38I | GRGCYC | 2 cut(s) | 51, 789 |
| FaeI | CATG | 4 cut(s) | 323, 530, 603, 671 |
| FaqI | GGGAC | 3 cut(s) | 104, 434, 603 |
| FatI | CATG | 4 cut(s) | 319, 526, 599, 667 |
| FauI | CCCGC | 2 cut(s) | 110, 797 |
| Fnu4HI | GCNGC | 1 cut(s) | 62 |
| FokI | GGATG | 3 cut(s) | 426, 706, 841 |
| FriOI | GRGCYC | 2 cut(s) | 51, 789 |
| Fsp4HI | GCNGC | 1 cut(s) | 62 |
| FspBI | CTAG | 2 cut(s) | 138, 284 |
| GluI | GCNGC | 1 cut(s) | 62 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 4 cut(s) | 548, 744, 787, 810 |
| HapII | CCGG | 1 cut(s) | 68 |
| Hin1II | CATG | 4 cut(s) | 323, 530, 603, 671 |
| HinfI | GANTC | 2 cut(s) | 92, 704 |
| HpaII | CCGG | 1 cut(s) | 68 |
| HphI | GGTGA | 3 cut(s) | 575, 760, 809 |
| Hpy166II | GTNNAC | 1 cut(s) | 313 |
| Hpy188I | TCNGA | 2 cut(s) | 647, 709 |
| Hpy188III | TCNNGA | 1 cut(s) | 138 |
| Hpy8I | GTNNAC | 1 cut(s) | 313 |
| HpyAV | CCTTC | 1 cut(s) | 623 |
| HpyCH4III | ACNGT | 4 cut(s) | 8, 19, 466, 733 |
| HpyCH4V | TGCA | 5 cut(s) | 64, 123, 535, 599, 671 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 280, 677, 686 |
| HpyF3I | CTNAG | 3 cut(s) | 191, 345, 431 |
| Hsp92II | CATG | 4 cut(s) | 323, 530, 603, 671 |
| Kzo9I | GATC | 3 cut(s) | 55, 183, 777 |
| LmnI | GCTCC | 2 cut(s) | 280, 797 |
| Lsp1109I | GCAGC | 1 cut(s) | 48 |
| LweI | GCATC | 1 cut(s) | 544 |
| MaeI | CTAG | 2 cut(s) | 138, 284 |
| MaeIII | GTNAC | 2 cut(s) | 563, 733 |
| MalI | GATC | 3 cut(s) | 57, 185, 779 |
| MbiI | CCGCTC | 1 cut(s) | 792 |
| MboI | GATC | 3 cut(s) | 55, 183, 777 |
| MboII | GAAGA | 3 cut(s) | 167, 412, 592 |
| MflI | RGATCY | 3 cut(s) | 55, 183, 777 |
| MhlI | GDGCHC | 2 cut(s) | 51, 789 |
| MlsI | TGGCCA | 1 cut(s) | 548 |
| MluCI | AATT | 3 cut(s) | 219, 223, 841 |
| MluNI | TGGCCA | 1 cut(s) | 548 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| Mox20I | TGGCCA | 1 cut(s) | 548 |
| Mph1103I | ATGCAT | 1 cut(s) | 537 |
| MroXI | GAANNNNTTC | 1 cut(s) | 500 |
| MscI | TGGCCA | 1 cut(s) | 548 |
| MseI | TTAA | 4 cut(s) | 80, 222, 383, 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 412 |
| Msp20I | TGGCCA | 1 cut(s) | 548 |
| MspI | CCGG | 1 cut(s) | 68 |
| MspR9I | CCNGG | 6 cut(s) | 52, 68, 69, 569, 746, 783 |
| Mva1269I | GAATGC | 1 cut(s) | 170 |
| MvaI | CCWGG | 4 cut(s) | 52, 569, 746, 783 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 280, 677, 686 |
| NciI | CCSGG | 2 cut(s) | 68, 69 |
| NdeII | GATC | 3 cut(s) | 55, 183, 777 |
| NheI | GCTAGC | 1 cut(s) | 283 |
| NlaIII | CATG | 4 cut(s) | 323, 530, 603, 671 |
| NlaIV | GGNNCC | 3 cut(s) | 779, 787, 788 |
| NmuCI | GTSAC | 1 cut(s) | 563 |
| NsiI | ATGCAT | 1 cut(s) | 537 |
| NspV | TTCGAA | 1 cut(s) | 504 |
| PasI | CCCWGGG | 2 cut(s) | 51, 782 |
| PctI | GAATGC | 1 cut(s) | 170 |
| PdmI | GAANNNNTTC | 1 cut(s) | 500 |
| PfeI | GAWTC | 1 cut(s) | 704 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 555, 751 |
| PkrI | GCNGC | 1 cut(s) | 63 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| PshBI | ATTAAT | 1 cut(s) | 222 |
| Psp6I | CCWGG | 4 cut(s) | 50, 567, 744, 781 |
| PspEI | GGTNACC | 1 cut(s) | 563 |
| PspGI | CCWGG | 4 cut(s) | 50, 567, 744, 781 |
| PspN4I | GGNNCC | 3 cut(s) | 779, 787, 788 |
| PspOMI | GGGCCC | 1 cut(s) | 785 |
| PspPI | GGNCC | 3 cut(s) | 655, 785, 786 |
| PsuI | RGATCY | 3 cut(s) | 55, 183, 777 |
| RsaI | GTAC | 1 cut(s) | 834 |
| RsaNI | GTAC | 1 cut(s) | 833 |
| RseI | CAYNNNNRTG | 1 cut(s) | 412 |
| SaqAI | TTAA | 4 cut(s) | 80, 222, 383, 459 |
| SatI | GCNGC | 1 cut(s) | 62 |
| Sau3AI | GATC | 3 cut(s) | 55, 183, 777 |
| Sau96I | GGNCC | 3 cut(s) | 655, 785, 786 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 6 cut(s) | 52, 68, 69, 569, 746, 783 |
| SduI | GDGCHC | 2 cut(s) | 51, 789 |
| SetI | ASST | 9 cut(s) | 111, 239, 285, 289, 356, 643, 716, 750, 805 |
| SfaNI | GCATC | 1 cut(s) | 544 |
| SfuI | TTCGAA | 1 cut(s) | 504 |
| SinI | GGWCC | 1 cut(s) | 655 |
| SmaI | CCCGGG | 1 cut(s) | 69 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 412 |
| SmlI | CTYRAG | 2 cut(s) | 170, 738 |
| SmoI | CTYRAG | 2 cut(s) | 170, 738 |
| Sse9I | AATT | 3 cut(s) | 219, 223, 841 |
| SsiI | CCGC | 2 cut(s) | 103, 790 |
| SspMI | CTAG | 2 cut(s) | 138, 284 |
| StyD4I | CCNGG | 6 cut(s) | 50, 66, 67, 567, 744, 781 |
| TaaI | ACNGT | 4 cut(s) | 8, 19, 466, 733 |
| TaqI | TCGA | 2 cut(s) | 504, 514 |
| TasI | AATT | 3 cut(s) | 219, 223, 841 |
| TfiI | GAWTC | 1 cut(s) | 704 |
| Tru1I | TTAA | 4 cut(s) | 80, 222, 383, 459 |
| Tru9I | TTAA | 4 cut(s) | 80, 222, 383, 459 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TseFI | GTSAC | 1 cut(s) | 563 |
| TseI | GCWGC | 1 cut(s) | 61 |
| Tsp45I | GTSAC | 1 cut(s) | 563 |
| TspDTI | ATGAA | 3 cut(s) | 17, 509, 642 |
| TspGWI | ACGGA | 1 cut(s) | 365 |
| TspMI | CCCGGG | 1 cut(s) | 67 |
| TspRI | CASTG | 1 cut(s) | 130 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 555, 751 |
| VpaK11BI | GGWCC | 1 cut(s) | 655 |
| VspI | ATTAAT | 1 cut(s) | 222 |
| XbaI | TCTAGA | 1 cut(s) | 137 |
| XmaI | CCCGGG | 1 cut(s) | 67 |
| XmnI | GAANNNNTTC | 1 cut(s) | 500 |
| XspI | CTAG | 2 cut(s) | 138, 284 |
| Zsp2I | ATGCAT | 1 cut(s) | 537 |