Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 773 |
| AcsI | RAATTY | 4 cut(s) | 137, 296, 375, 510 |
| AfaI | GTAC | 2 cut(s) | 215, 671 |
| AflII | CTTAAG | 1 cut(s) | 988 |
| AluBI | AGCT | 5 cut(s) | 8, 293, 665, 740, 1075 |
| AluI | AGCT | 5 cut(s) | 8, 293, 665, 740, 1075 |
| Alw21I | GWGCWC | 1 cut(s) | 936 |
| Alw26I | GTCTC | 2 cut(s) | 1078, 1141 |
| Ama87I | CYCGRG | 1 cut(s) | 1141 |
| AoxI | GGCC | 1 cut(s) | 774 |
| ApeKI | GCWGC | 3 cut(s) | 64, 740, 743 |
| ApoI | RAATTY | 4 cut(s) | 137, 296, 375, 510 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 155, 187 |
| AseI | ATTAAT | 1 cut(s) | 459 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 141 |
| AspS9I | GGNCC | 1 cut(s) | 128 |
| AsuC2I | CCSGG | 1 cut(s) | 1110 |
| AsuHPI | GGTGA | 1 cut(s) | 500 |
| AsuNHI | GCTAGC | 1 cut(s) | 220 |
| AvaI | CYCGRG | 1 cut(s) | 1141 |
| AvaII | GGWCC | 1 cut(s) | 128 |
| BanII | GRGCYC | 1 cut(s) | 839 |
| Bbv12I | GWGCWC | 1 cut(s) | 936 |
| BbvI | GCAGC | 3 cut(s) | 76, 727, 730 |
| BccI | CCATC | 1 cut(s) | 609 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 923, 957 |
| BclI | TGATCA | 2 cut(s) | 333, 381 |
| BcnI | CCSGG | 1 cut(s) | 1110 |
| BcoDI | GTCTC | 2 cut(s) | 1078, 1141 |
| BfaI | CTAG | 2 cut(s) | 221, 1088 |
| BfmI | CTRYAG | 1 cut(s) | 744 |
| BfrI | CTTAAG | 1 cut(s) | 988 |
| BglII | AGATCT | 1 cut(s) | 706 |
| BisI | GCNGC | 4 cut(s) | 65, 741, 744, 774 |
| BlsI | GCNGC | 4 cut(s) | 66, 742, 745, 775 |
| Bme1390I | CCNGG | 1 cut(s) | 1110 |
| Bme18I | GGWCC | 1 cut(s) | 128 |
| BmeT110I | CYCGRG | 1 cut(s) | 1141 |
| BmgT120I | GGNCC | 1 cut(s) | 128 |
| BmiI | GGNNCC | 1 cut(s) | 836 |
| BmrFI | CCNGG | 1 cut(s) | 1110 |
| BmrI | ACTGGG | 1 cut(s) | 1160 |
| BmsI | GCATC | 4 cut(s) | 96, 118, 706, 862 |
| BmtI | GCTAGC | 1 cut(s) | 224 |
| BmuI | ACTGGG | 1 cut(s) | 1160 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 761, 793 |
| BpmI | CTGGAG | 1 cut(s) | 911 |
| BpuEI | CTTGAG | 2 cut(s) | 151, 763 |
| BpuMI | CCSGG | 1 cut(s) | 1110 |
| BsaBI | GATNNNNATC | 1 cut(s) | 252 |
| Bse118I | RCCGGY | 1 cut(s) | 216 |
| Bse1I | ACTGG | 4 cut(s) | 753, 894, 1155, 1161 |
| Bse3DI | GCAATG | 2 cut(s) | 423, 737 |
| Bse8I | GATNNNNATC | 1 cut(s) | 252 |
| BseGI | GGATG | 2 cut(s) | 109, 620 |
| BseJI | GATNNNNATC | 1 cut(s) | 252 |
| BseMI | GCAATG | 2 cut(s) | 423, 737 |
| BseNI | ACTGG | 4 cut(s) | 753, 894, 1155, 1161 |
| BseRI | GAGGAG | 2 cut(s) | 185, 1159 |
| BseXI | GCAGC | 3 cut(s) | 76, 727, 730 |
| BsgI | GTGCAG | 1 cut(s) | 78 |
| BshFI | GGCC | 1 cut(s) | 776 |
| BsiHKAI | GWGCWC | 1 cut(s) | 936 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1141 |
| BsiSI | CCGG | 2 cut(s) | 217, 1109 |
| BslFI | GGGAC | 1 cut(s) | 1167 |
| BsmAI | GTCTC | 2 cut(s) | 1078, 1141 |
| BsmFI | GGGAC | 1 cut(s) | 1167 |
| BsmI | GAATGC | 1 cut(s) | 792 |
| BsnI | GGCC | 1 cut(s) | 776 |
| BsoBI | CYCGRG | 1 cut(s) | 1141 |
| Bsp1286I | GDGCHC | 2 cut(s) | 839, 936 |
| Bsp143I | GATC | 3 cut(s) | 333, 381, 706 |
| BspACI | CCGC | 1 cut(s) | 773 |
| BspANI | GGCC | 1 cut(s) | 776 |
| BspLI | GGNNCC | 1 cut(s) | 836 |
| BspMAI | CTGCAG | 1 cut(s) | 748 |
| BspOI | GCTAGC | 1 cut(s) | 224 |
| BspTI | CTTAAG | 1 cut(s) | 988 |
| BsrDI | GCAATG | 2 cut(s) | 423, 737 |
| BsrFI | RCCGGY | 1 cut(s) | 216 |
| BsrI | ACTGG | 4 cut(s) | 753, 894, 1155, 1161 |
| BssAI | RCCGGY | 1 cut(s) | 216 |
| BssMI | GATC | 3 cut(s) | 333, 381, 706 |
| Bst4CI | ACNGT | 2 cut(s) | 1104, 1133 |
| Bst6I | CTCTTC | 1 cut(s) | 492 |
| BstAFI | CTTAAG | 1 cut(s) | 988 |
| BstC8I | GCNNGC | 2 cut(s) | 222, 603 |
| BstDEI | CTNAG | 1 cut(s) | 356 |
| BstF5I | GGATG | 2 cut(s) | 109, 620 |
| BstKTI | GATC | 3 cut(s) | 336, 384, 709 |
| BstMAI | GTCTC | 2 cut(s) | 1078, 1141 |
| BstMBI | GATC | 3 cut(s) | 333, 381, 706 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 299, 602 |
| BstSCI | CCNGG | 1 cut(s) | 1108 |
| BstSFI | CTRYAG | 1 cut(s) | 744 |
| BstV1I | GCAGC | 3 cut(s) | 76, 727, 730 |
| BstX2I | RGATCY | 1 cut(s) | 706 |
| BstYI | RGATCY | 1 cut(s) | 706 |
| BsuRI | GGCC | 1 cut(s) | 776 |
| BtsCI | GGATG | 2 cut(s) | 109, 620 |
| BtsI | GCAGTG | 2 cut(s) | 231, 753 |
| BtsIMutI | CAGTG | 3 cut(s) | 231, 753, 1125 |
| Cac8I | GCNNGC | 2 cut(s) | 222, 603 |
| Cfr10I | RCCGGY | 1 cut(s) | 216 |
| Cfr13I | GGNCC | 1 cut(s) | 128 |
| Csp6I | GTAC | 2 cut(s) | 214, 670 |
| CviAII | CATG | 4 cut(s) | 61, 245, 551, 581 |
| CviQI | GTAC | 2 cut(s) | 214, 670 |
| DdeI | CTNAG | 1 cut(s) | 356 |
| DpnI | GATC | 3 cut(s) | 335, 383, 708 |
| DpnII | GATC | 3 cut(s) | 333, 381, 706 |
| Eam1104I | CTCTTC | 1 cut(s) | 492 |
| EarI | CTCTTC | 1 cut(s) | 492 |
| Eco24I | GRGCYC | 1 cut(s) | 839 |
| Eco47I | GGWCC | 1 cut(s) | 128 |
| Eco88I | CYCGRG | 1 cut(s) | 1141 |
| EcoT22I | ATGCAT | 2 cut(s) | 111, 794 |
| EcoT38I | GRGCYC | 1 cut(s) | 839 |
| FaeI | CATG | 4 cut(s) | 64, 248, 554, 584 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 966, 998 |
| FaqI | GGGAC | 1 cut(s) | 1167 |
| FatI | CATG | 4 cut(s) | 60, 244, 550, 580 |
| FbaI | TGATCA | 2 cut(s) | 333, 381 |
| Fnu4HI | GCNGC | 4 cut(s) | 65, 741, 744, 774 |
| FokI | GGATG | 2 cut(s) | 96, 627 |
| FriOI | GRGCYC | 1 cut(s) | 839 |
| Fsp4HI | GCNGC | 4 cut(s) | 65, 741, 744, 774 |
| FspBI | CTAG | 2 cut(s) | 221, 1088 |
| GluI | GCNGC | 4 cut(s) | 65, 741, 744, 774 |
| GsuI | CTGGAG | 1 cut(s) | 911 |
| HaeIII | GGCC | 1 cut(s) | 776 |
| HapII | CCGG | 2 cut(s) | 217, 1109 |
| Hin1II | CATG | 4 cut(s) | 64, 248, 554, 584 |
| HincII | GTYRAC | 1 cut(s) | 36 |
| HindII | GTYRAC | 1 cut(s) | 36 |
| HindIII | AAGCTT | 1 cut(s) | 663 |
| HinfI | GANTC | 5 cut(s) | 121, 164, 352, 621, 783 |
| HpaII | CCGG | 2 cut(s) | 217, 1109 |
| HphI | GGTGA | 1 cut(s) | 500 |
| Hpy166II | GTNNAC | 3 cut(s) | 36, 263, 918 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 381, 970 |
| Hpy188III | TCNNGA | 4 cut(s) | 103, 780, 818, 1141 |
| Hpy8I | GTNNAC | 3 cut(s) | 36, 263, 918 |
| HpyAV | CCTTC | 1 cut(s) | 975 |
| HpyCH4III | ACNGT | 2 cut(s) | 1104, 1133 |
| HpyCH4IV | ACGT | 3 cut(s) | 232, 920, 1162 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 299, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 356 |
| HpySE526I | ACGT | 3 cut(s) | 232, 920, 1162 |
| Hsp92II | CATG | 4 cut(s) | 64, 248, 554, 584 |
| Ksp22I | TGATCA | 2 cut(s) | 333, 381 |
| Kzo9I | GATC | 3 cut(s) | 333, 381, 706 |
| LmnI | GCTCC | 1 cut(s) | 834 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 727, 730 |
| LweI | GCATC | 4 cut(s) | 96, 118, 706, 862 |
| MaeI | CTAG | 2 cut(s) | 221, 1088 |
| MaeII | ACGT | 3 cut(s) | 232, 920, 1162 |
| MaeIII | GTNAC | 4 cut(s) | 488, 944, 1025, 1166 |
| MalI | GATC | 3 cut(s) | 335, 383, 708 |
| MboI | GATC | 3 cut(s) | 333, 381, 706 |
| MboII | GAAGA | 2 cut(s) | 472, 509 |
| MflI | RGATCY | 1 cut(s) | 706 |
| MhlI | GDGCHC | 2 cut(s) | 839, 936 |
| MluCI | AATT | 6 cut(s) | 137, 296, 375, 510, 825, 866 |
| MlyI | GAGTC | 2 cut(s) | 130, 158 |
| MmeI | TCCRAC | 1 cut(s) | 320 |
| Mph1103I | ATGCAT | 2 cut(s) | 111, 794 |
| MroXI | GAANNNNTTC | 1 cut(s) | 141 |
| MseI | TTAA | 4 cut(s) | 269, 459, 542, 989 |
| MspCI | CTTAAG | 1 cut(s) | 988 |
| MspI | CCGG | 2 cut(s) | 217, 1109 |
| MspR9I | CCNGG | 1 cut(s) | 1110 |
| Mva1269I | GAATGC | 1 cut(s) | 792 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 299, 602 |
| NciI | CCSGG | 1 cut(s) | 1110 |
| NdeII | GATC | 3 cut(s) | 333, 381, 706 |
| NheI | GCTAGC | 1 cut(s) | 220 |
| NlaIII | CATG | 4 cut(s) | 64, 248, 554, 584 |
| NlaIV | GGNNCC | 1 cut(s) | 836 |
| NmuCI | GTSAC | 3 cut(s) | 488, 944, 1166 |
| NsiI | ATGCAT | 2 cut(s) | 111, 794 |
| PaeR7I | CTCGAG | 1 cut(s) | 1141 |
| PctI | GAATGC | 1 cut(s) | 792 |
| PdmI | GAANNNNTTC | 1 cut(s) | 141 |
| PfeI | GAWTC | 3 cut(s) | 352, 621, 783 |
| PkrI | GCNGC | 4 cut(s) | 66, 742, 745, 775 |
| PleI | GAGTC | 2 cut(s) | 129, 158 |
| PpsI | GAGTC | 2 cut(s) | 129, 158 |
| PshBI | ATTAAT | 1 cut(s) | 459 |
| PspN4I | GGNNCC | 1 cut(s) | 836 |
| PspPI | GGNCC | 1 cut(s) | 128 |
| PstI | CTGCAG | 1 cut(s) | 748 |
| PsuI | RGATCY | 1 cut(s) | 706 |
| RsaI | GTAC | 2 cut(s) | 215, 671 |
| RsaNI | GTAC | 2 cut(s) | 214, 670 |
| SaqAI | TTAA | 4 cut(s) | 269, 459, 542, 989 |
| SatI | GCNGC | 4 cut(s) | 65, 741, 744, 774 |
| Sau3AI | GATC | 3 cut(s) | 333, 381, 706 |
| Sau96I | GGNCC | 1 cut(s) | 128 |
| SchI | GAGTC | 2 cut(s) | 130, 158 |
| ScrFI | CCNGG | 1 cut(s) | 1110 |
| SduI | GDGCHC | 2 cut(s) | 839, 936 |
| SfaNI | GCATC | 4 cut(s) | 96, 118, 706, 862 |
| SfcI | CTRYAG | 1 cut(s) | 744 |
| Sfr274I | CTCGAG | 1 cut(s) | 1141 |
| SinI | GGWCC | 1 cut(s) | 128 |
| SlaI | CTCGAG | 1 cut(s) | 1141 |
| SmlI | CTYRAG | 4 cut(s) | 166, 778, 988, 1141 |
| SmoI | CTYRAG | 4 cut(s) | 166, 778, 988, 1141 |
| Sse9I | AATT | 6 cut(s) | 137, 296, 375, 510, 825, 866 |
| SsiI | CCGC | 1 cut(s) | 773 |
| SspI | AATATT | 1 cut(s) | 592 |
| SspMI | CTAG | 2 cut(s) | 221, 1088 |
| StyD4I | CCNGG | 1 cut(s) | 1108 |
| TaaI | ACNGT | 2 cut(s) | 1104, 1133 |
| TaiI | ACGT | 3 cut(s) | 235, 923, 1165 |
| TaqI | TCGA | 2 cut(s) | 162, 1142 |
| TasI | AATT | 6 cut(s) | 137, 296, 375, 510, 825, 866 |
| TatI | WGTACW | 1 cut(s) | 669 |
| TauI | GCSGC | 1 cut(s) | 776 |
| TfiI | GAWTC | 3 cut(s) | 352, 621, 783 |
| Tru1I | TTAA | 4 cut(s) | 269, 459, 542, 989 |
| Tru9I | TTAA | 4 cut(s) | 269, 459, 542, 989 |
| TscAI | CASTG | 3 cut(s) | 231, 753, 1132 |
| TseFI | GTSAC | 3 cut(s) | 488, 944, 1166 |
| TseI | GCWGC | 3 cut(s) | 64, 740, 743 |
| Tsp45I | GTSAC | 3 cut(s) | 488, 944, 1166 |
| TspDTI | ATGAA | 7 cut(s) | 33, 66, 150, 255, 434, 503, 569 |
| TspGWI | ACGGA | 1 cut(s) | 102 |
| TspRI | CASTG | 3 cut(s) | 231, 753, 1132 |
| Vha464I | CTTAAG | 1 cut(s) | 988 |
| VpaK11BI | GGWCC | 1 cut(s) | 128 |
| VspI | ATTAAT | 1 cut(s) | 459 |
| XapI | RAATTY | 4 cut(s) | 137, 296, 375, 510 |
| XhoI | CTCGAG | 1 cut(s) | 1141 |
| XmnI | GAANNNNTTC | 1 cut(s) | 141 |
| XspI | CTAG | 2 cut(s) | 221, 1088 |
| Zsp2I | ATGCAT | 2 cut(s) | 111, 794 |