Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TLD | PF07534 | 181 - 346 | 2.5e-40 | TLDc domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 757, 854, 1087 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 179 |
| AccBSI | CCGCTC | 1 cut(s) | 421 |
| AciI | CCGC | 3 cut(s) | 32, 421, 862 |
| AclWI | GGATC | 1 cut(s) | 958 |
| AcoI | YGGCCR | 1 cut(s) | 826 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AdeI | CACNNNGTG | 2 cut(s) | 43, 876 |
| AfaI | GTAC | 4 cut(s) | 383, 609, 640, 1065 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 179 |
| AgsI | TTSAA | 2 cut(s) | 666, 931 |
| AjnI | CCWGG | 4 cut(s) | 384, 694, 823, 1090 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 673, 705, 851, 883 |
| AluBI | AGCT | 4 cut(s) | 167, 342, 377, 896 |
| AluI | AGCT | 4 cut(s) | 167, 342, 377, 896 |
| Alw26I | GTCTC | 1 cut(s) | 714 |
| AlwI | GGATC | 1 cut(s) | 958 |
| AoxI | GGCC | 7 cut(s) | 8, 33, 182, 516, 692, 697, 826 |
| ApeKI | GCWGC | 2 cut(s) | 24, 389 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 452, 484 |
| AspLEI | GCGC | 1 cut(s) | 604 |
| AspS9I | GGNCC | 3 cut(s) | 34, 123, 182 |
| AsuC2I | CCSGG | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 1 cut(s) | 458 |
| AvaII | GGWCC | 1 cut(s) | 123 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 792, 825 |
| BalI | TGGCCA | 1 cut(s) | 828 |
| BanI | GGYRCC | 3 cut(s) | 757, 854, 1087 |
| BbsI | GAAGAC | 3 cut(s) | 11, 622, 1008 |
| BbvI | GCAGC | 2 cut(s) | 36, 376 |
| BccI | CCATC | 6 cut(s) | 113, 173, 446, 615, 837, 1098 |
| BciT130I | CCWGG | 4 cut(s) | 386, 696, 825, 1092 |
| BcnI | CCSGG | 1 cut(s) | 599 |
| BcoDI | GTCTC | 1 cut(s) | 714 |
| BfaI | CTAG | 2 cut(s) | 573, 605 |
| BfmI | CTRYAG | 2 cut(s) | 312, 849 |
| BfoI | RGCGCY | 1 cut(s) | 605 |
| BisI | GCNGC | 3 cut(s) | 25, 33, 390 |
| BlsI | GCNGC | 3 cut(s) | 26, 34, 391 |
| BmcAI | AGTACT | 1 cut(s) | 1065 |
| Bme1390I | CCNGG | 5 cut(s) | 386, 599, 696, 825, 1092 |
| Bme18I | GGWCC | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 3 cut(s) | 34, 123, 182 |
| BmiI | GGNNCC | 4 cut(s) | 124, 759, 856, 1089 |
| BmrFI | CCNGG | 5 cut(s) | 386, 599, 696, 825, 1092 |
| BpiI | GAAGAC | 3 cut(s) | 11, 622, 1008 |
| BpmI | CTGGAG | 1 cut(s) | 495 |
| BpuMI | CCSGG | 1 cut(s) | 599 |
| BsaI | GGTCTC | 1 cut(s) | 714 |
| BsaJI | CCNNGG | 3 cut(s) | 351, 519, 1091 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 179 |
| Bse1I | ACTGG | 2 cut(s) | 64, 173 |
| BseBI | CCWGG | 4 cut(s) | 386, 696, 825, 1092 |
| BseDI | CCNNGG | 3 cut(s) | 351, 519, 1091 |
| BseGI | GGATG | 3 cut(s) | 124, 268, 829 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseMII | CTCAG | 4 cut(s) | 456, 555, 715, 1011 |
| BseNI | ACTGG | 2 cut(s) | 64, 173 |
| BseRI | GAGGAG | 2 cut(s) | 90, 93 |
| BseXI | GCAGC | 2 cut(s) | 36, 376 |
| BsgI | GTGCAG | 1 cut(s) | 753 |
| BshFI | GGCC | 7 cut(s) | 10, 35, 184, 518, 694, 699, 828 |
| BshNI | GGYRCC | 3 cut(s) | 757, 854, 1087 |
| BsiSI | CCGG | 1 cut(s) | 599 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BsmAI | GTCTC | 1 cut(s) | 714 |
| BsnI | GGCC | 7 cut(s) | 10, 35, 184, 518, 694, 699, 828 |
| Bso31I | GGTCTC | 1 cut(s) | 714 |
| Bsp143I | GATC | 2 cut(s) | 937, 950 |
| BspACI | CCGC | 3 cut(s) | 32, 421, 862 |
| BspANI | GGCC | 7 cut(s) | 10, 35, 184, 518, 694, 699, 828 |
| BspCNI | CTCAG | 4 cut(s) | 457, 556, 714, 1010 |
| BspLI | GGNNCC | 4 cut(s) | 124, 759, 856, 1089 |
| BspMAI | CTGCAG | 1 cut(s) | 316 |
| BspPI | GGATC | 1 cut(s) | 958 |
| BspT107I | GGYRCC | 3 cut(s) | 757, 854, 1087 |
| BspTNI | GGTCTC | 1 cut(s) | 714 |
| BsrBI | CCGCTC | 1 cut(s) | 421 |
| BsrI | ACTGG | 2 cut(s) | 64, 173 |
| BssECI | CCNNGG | 3 cut(s) | 351, 519, 1091 |
| BssMI | GATC | 2 cut(s) | 937, 950 |
| BssT1I | CCWWGG | 2 cut(s) | 351, 519 |
| Bst2UI | CCWGG | 4 cut(s) | 386, 696, 825, 1092 |
| Bst4CI | ACNGT | 5 cut(s) | 222, 329, 549, 590, 725 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 329 |
| BstDEI | CTNAG | 7 cut(s) | 368, 465, 564, 701, 764, 997, 1050 |
| BstEII | GGTNACC | 1 cut(s) | 428 |
| BstF5I | GGATG | 3 cut(s) | 124, 268, 829 |
| BstH2I | RGCGCY | 1 cut(s) | 605 |
| BstHHI | GCGC | 1 cut(s) | 604 |
| BstKTI | GATC | 2 cut(s) | 940, 953 |
| BstMAI | GTCTC | 1 cut(s) | 714 |
| BstMBI | GATC | 2 cut(s) | 937, 950 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 320 |
| BstNI | CCWGG | 4 cut(s) | 386, 696, 825, 1092 |
| BstPI | GGTNACC | 1 cut(s) | 428 |
| BstSCI | CCNGG | 5 cut(s) | 384, 597, 694, 823, 1090 |
| BstSFI | CTRYAG | 2 cut(s) | 312, 849 |
| BstV1I | GCAGC | 2 cut(s) | 36, 376 |
| BstV2I | GAAGAC | 3 cut(s) | 11, 622, 1008 |
| BsuRI | GGCC | 7 cut(s) | 10, 35, 184, 518, 694, 699, 828 |
| BtsCI | GGATG | 3 cut(s) | 124, 268, 829 |
| BtsI | GCAGTG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 3 cut(s) | 218, 321, 334 |
| CfoI | GCGC | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 3 cut(s) | 34, 123, 182 |
| Csp6I | GTAC | 4 cut(s) | 382, 608, 639, 1064 |
| CviAII | CATG | 3 cut(s) | 642, 650, 984 |
| CviQI | GTAC | 4 cut(s) | 382, 608, 639, 1064 |
| DdeI | CTNAG | 7 cut(s) | 368, 465, 564, 701, 764, 997, 1050 |
| DpnI | GATC | 2 cut(s) | 939, 952 |
| DpnII | GATC | 2 cut(s) | 937, 950 |
| DraIII | CACNNNGTG | 2 cut(s) | 43, 876 |
| EaeI | YGGCCR | 1 cut(s) | 826 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 329 |
| EarI | CTCTTC | 2 cut(s) | 150, 329 |
| Eco130I | CCWWGG | 2 cut(s) | 351, 519 |
| Eco31I | GGTCTC | 1 cut(s) | 714 |
| Eco32I | GATATC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 123 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| Eco91I | GGTNACC | 1 cut(s) | 428 |
| EcoO65I | GGTNACC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 4 cut(s) | 384, 694, 823, 1090 |
| EcoRV | GATATC | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 2 cut(s) | 351, 519 |
| ErhI | CCWWGG | 2 cut(s) | 351, 519 |
| FaeI | CATG | 3 cut(s) | 645, 653, 987 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 326, 358 |
| FatI | CATG | 3 cut(s) | 641, 649, 983 |
| FauNDI | CATATG | 1 cut(s) | 492 |
| Fnu4HI | GCNGC | 3 cut(s) | 25, 33, 390 |
| FokI | GGATG | 3 cut(s) | 131, 275, 816 |
| Fsp4HI | GCNGC | 3 cut(s) | 25, 33, 390 |
| FspBI | CTAG | 2 cut(s) | 573, 605 |
| GlaI | GCGC | 1 cut(s) | 603 |
| GluI | GCNGC | 3 cut(s) | 25, 33, 390 |
| GsuI | CTGGAG | 1 cut(s) | 495 |
| HaeII | RGCGCY | 1 cut(s) | 605 |
| HaeIII | GGCC | 7 cut(s) | 10, 35, 184, 518, 694, 699, 828 |
| HapII | CCGG | 1 cut(s) | 599 |
| HhaI | GCGC | 1 cut(s) | 604 |
| Hin1II | CATG | 3 cut(s) | 645, 653, 987 |
| Hin6I | GCGC | 1 cut(s) | 602 |
| HinP1I | GCGC | 1 cut(s) | 602 |
| HindIII | AAGCTT | 1 cut(s) | 340 |
| HinfI | GANTC | 7 cut(s) | 16, 160, 236, 308, 412, 461, 979 |
| HpaII | CCGG | 1 cut(s) | 599 |
| HphI | GGTGA | 1 cut(s) | 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 593 |
| Hpy188I | TCNGA | 9 cut(s) | 82, 235, 262, 307, 411, 466, 544, 967, 1000 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 126, 240, 416 |
| Hpy8I | GTNNAC | 1 cut(s) | 593 |
| HpyAV | CCTTC | 2 cut(s) | 105, 418 |
| HpyCH4III | ACNGT | 5 cut(s) | 222, 329, 549, 590, 725 |
| HpyCH4V | TGCA | 7 cut(s) | 206, 314, 392, 496, 734, 920, 992 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 320 |
| HpyF3I | CTNAG | 7 cut(s) | 368, 465, 564, 701, 764, 997, 1050 |
| Hsp92II | CATG | 3 cut(s) | 645, 653, 987 |
| HspAI | GCGC | 1 cut(s) | 602 |
| Kzo9I | GATC | 2 cut(s) | 937, 950 |
| Lsp1109I | GCAGC | 2 cut(s) | 36, 376 |
| MaeI | CTAG | 2 cut(s) | 573, 605 |
| MaeIII | GTNAC | 3 cut(s) | 43, 428, 627 |
| MalI | GATC | 2 cut(s) | 939, 952 |
| MbiI | CCGCTC | 1 cut(s) | 421 |
| MboI | GATC | 2 cut(s) | 937, 950 |
| MboII | GAAGA | 8 cut(s) | 11, 122, 167, 186, 346, 627, 690, 1013 |
| MlsI | TGGCCA | 1 cut(s) | 828 |
| MluNI | TGGCCA | 1 cut(s) | 828 |
| MlyI | GAGTC | 5 cut(s) | 25, 169, 245, 421, 455 |
| MmeI | TCCRAC | 1 cut(s) | 697 |
| Mox20I | TGGCCA | 1 cut(s) | 828 |
| MscI | TGGCCA | 1 cut(s) | 828 |
| Msp20I | TGGCCA | 1 cut(s) | 828 |
| MspI | CCGG | 1 cut(s) | 599 |
| MspR9I | CCNGG | 5 cut(s) | 386, 599, 696, 825, 1092 |
| MvaI | CCWGG | 4 cut(s) | 386, 696, 825, 1092 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 320 |
| NciI | CCSGG | 1 cut(s) | 599 |
| NdeI | CATATG | 1 cut(s) | 492 |
| NdeII | GATC | 2 cut(s) | 937, 950 |
| NlaIII | CATG | 3 cut(s) | 645, 653, 987 |
| NlaIV | GGNNCC | 4 cut(s) | 124, 759, 856, 1089 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| PfeI | GAWTC | 2 cut(s) | 308, 979 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 179 |
| PkrI | GCNGC | 3 cut(s) | 26, 34, 391 |
| PleI | GAGTC | 5 cut(s) | 24, 168, 244, 420, 455 |
| PpsI | GAGTC | 5 cut(s) | 24, 168, 244, 420, 455 |
| Psp6I | CCWGG | 4 cut(s) | 384, 694, 823, 1090 |
| PspEI | GGTNACC | 1 cut(s) | 428 |
| PspGI | CCWGG | 4 cut(s) | 384, 694, 823, 1090 |
| PspN4I | GGNNCC | 4 cut(s) | 124, 759, 856, 1089 |
| PspPI | GGNCC | 3 cut(s) | 34, 123, 182 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 537, 569, 784, 816 |
| PstI | CTGCAG | 1 cut(s) | 316 |
| RsaI | GTAC | 4 cut(s) | 383, 609, 640, 1065 |
| RsaNI | GTAC | 4 cut(s) | 382, 608, 639, 1064 |
| SatI | GCNGC | 3 cut(s) | 25, 33, 390 |
| Sau3AI | GATC | 2 cut(s) | 937, 950 |
| Sau96I | GGNCC | 3 cut(s) | 34, 123, 182 |
| ScaI | AGTACT | 1 cut(s) | 1065 |
| SchI | GAGTC | 5 cut(s) | 25, 169, 245, 421, 455 |
| ScrFI | CCNGG | 5 cut(s) | 386, 599, 696, 825, 1092 |
| SfcI | CTRYAG | 2 cut(s) | 312, 849 |
| SinI | GGWCC | 1 cut(s) | 123 |
| SsiI | CCGC | 3 cut(s) | 32, 421, 862 |
| SspMI | CTAG | 2 cut(s) | 573, 605 |
| StyD4I | CCNGG | 5 cut(s) | 384, 597, 694, 823, 1090 |
| StyI | CCWWGG | 2 cut(s) | 351, 519 |
| TaaI | ACNGT | 5 cut(s) | 222, 329, 549, 590, 725 |
| TatI | WGTACW | 3 cut(s) | 607, 638, 1063 |
| TauI | GCSGC | 1 cut(s) | 35 |
| TfiI | GAWTC | 2 cut(s) | 308, 979 |
| TscAI | CASTG | 3 cut(s) | 225, 321, 334 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 2 cut(s) | 24, 389 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 3 cut(s) | 186, 279, 515 |
| TspRI | CASTG | 3 cut(s) | 225, 321, 334 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 1 cut(s) | 123 |
| XspI | CTAG | 2 cut(s) | 573, 605 |
| ZrmI | AGTACT | 1 cut(s) | 1065 |