Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 898 |
| Acc36I | ACCTGC | 1 cut(s) | 898 |
| AccI | GTMKAC | 3 cut(s) | 351, 413, 1099 |
| AccII | CGCG | 1 cut(s) | 410 |
| AccIII | TCCGGA | 1 cut(s) | 840 |
| AciI | CCGC | 2 cut(s) | 8, 626 |
| AclWI | GGATC | 1 cut(s) | 119 |
| AcsI | RAATTY | 4 cut(s) | 403, 752, 796, 936 |
| AcvI | CACGTG | 1 cut(s) | 36 |
| AfaI | GTAC | 3 cut(s) | 181, 436, 1070 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 176, 220, 221, 961, 1036 |
| AgsI | TTSAA | 4 cut(s) | 70, 247, 886, 1035 |
| AjnI | CCWGG | 1 cut(s) | 87 |
| AleI | CACNNNNGTG | 1 cut(s) | 816 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 676, 708 |
| AluBI | AGCT | 5 cut(s) | 190, 284, 380, 902, 947 |
| AluI | AGCT | 5 cut(s) | 190, 284, 380, 902, 947 |
| Alw21I | GWGCWC | 1 cut(s) | 538 |
| Alw26I | GTCTC | 1 cut(s) | 1011 |
| Alw44I | GTGCAC | 1 cut(s) | 534 |
| AlwI | GGATC | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 840 |
| ApaLI | GTGCAC | 1 cut(s) | 534 |
| ApeKI | GCWGC | 1 cut(s) | 24 |
| ApoI | RAATTY | 4 cut(s) | 403, 752, 796, 936 |
| AseI | ATTAAT | 1 cut(s) | 1284 |
| AspLEI | GCGC | 2 cut(s) | 786, 1144 |
| AspS9I | GGNCC | 2 cut(s) | 838, 1027 |
| AsuC2I | CCSGG | 1 cut(s) | 399 |
| AsuHPI | GGTGA | 2 cut(s) | 236, 944 |
| AsuII | TTCGAA | 1 cut(s) | 487 |
| AvaII | GGWCC | 2 cut(s) | 838, 1027 |
| BaeGI | GKGCMC | 1 cut(s) | 538 |
| BbrPI | CACGTG | 1 cut(s) | 36 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| Bbv12I | GWGCWC | 1 cut(s) | 538 |
| BbvI | GCAGC | 1 cut(s) | 11 |
| BccI | CCATC | 2 cut(s) | 634, 1217 |
| BciT130I | CCWGG | 1 cut(s) | 89 |
| BciVI | GTATCC | 2 cut(s) | 362, 655 |
| BcnI | CCSGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 1 cut(s) | 1011 |
| BfaI | CTAG | 6 cut(s) | 438, 539, 929, 998, 1152, 1309 |
| BfuAI | ACCTGC | 1 cut(s) | 898 |
| BfuI | GTATCC | 2 cut(s) | 362, 655 |
| BglII | AGATCT | 1 cut(s) | 61 |
| BisI | GCNGC | 2 cut(s) | 25, 627 |
| BlpI | GCTNAGC | 1 cut(s) | 876 |
| BlsI | GCNGC | 2 cut(s) | 26, 628 |
| Bme1390I | CCNGG | 2 cut(s) | 89, 399 |
| Bme18I | GGWCC | 2 cut(s) | 838, 1027 |
| BmgT120I | GGNCC | 2 cut(s) | 838, 1027 |
| BmiI | GGNNCC | 2 cut(s) | 1191, 1302 |
| BmrFI | CCNGG | 2 cut(s) | 89, 399 |
| BmsI | GCATC | 2 cut(s) | 525, 994 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 540, 572 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 876 |
| Bpu14I | TTCGAA | 1 cut(s) | 487 |
| BpuMI | CCSGG | 1 cut(s) | 399 |
| BsaAI | YACGTR | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 5 cut(s) | 128, 398, 615, 757, 955 |
| BsaWI | WCCGGW | 1 cut(s) | 840 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 176, 220, 221, 961, 1036 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| BseAI | TCCGGA | 1 cut(s) | 840 |
| BseBI | CCWGG | 1 cut(s) | 89 |
| BseDI | CCNNGG | 5 cut(s) | 128, 398, 615, 757, 955 |
| BseGI | GGATG | 5 cut(s) | 127, 390, 516, 1213, 1228 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 176, 220, 221, 961, 1036 |
| BseMII | CTCAG | 3 cut(s) | 174, 890, 912 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 5 cut(s) | 156, 200, 465, 559, 1037 |
| BseSI | GKGCMC | 1 cut(s) | 538 |
| BseXI | GCAGC | 1 cut(s) | 11 |
| BseYI | CCCAGC | 1 cut(s) | 960 |
| Bsh1236I | CGCG | 1 cut(s) | 410 |
| BsiHKAI | GWGCWC | 1 cut(s) | 538 |
| BsiSI | CCGG | 3 cut(s) | 398, 841, 933 |
| BslFI | GGGAC | 2 cut(s) | 977, 1243 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 176, 220, 221, 961, 1036 |
| BsmAI | GTCTC | 1 cut(s) | 1011 |
| BsmBI | CGTCTC | 1 cut(s) | 1011 |
| BsmFI | GGGAC | 2 cut(s) | 977, 1243 |
| BsmI | GAATGC | 1 cut(s) | 495 |
| Bsp119I | TTCGAA | 1 cut(s) | 487 |
| Bsp1286I | GDGCHC | 1 cut(s) | 538 |
| Bsp13I | TCCGGA | 1 cut(s) | 840 |
| Bsp143I | GATC | 4 cut(s) | 61, 124, 202, 700 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 876 |
| Bsp19I | CCATGG | 1 cut(s) | 757 |
| BspACI | CCGC | 2 cut(s) | 8, 626 |
| BspCNI | CTCAG | 3 cut(s) | 175, 889, 911 |
| BspEI | TCCGGA | 1 cut(s) | 840 |
| BspFNI | CGCG | 1 cut(s) | 410 |
| BspLI | GGNNCC | 2 cut(s) | 1191, 1302 |
| BspMI | ACCTGC | 1 cut(s) | 898 |
| BspPI | GGATC | 1 cut(s) | 119 |
| BspQI | GCTCTTC | 2 cut(s) | 930, 1014 |
| BspT104I | TTCGAA | 1 cut(s) | 487 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssECI | CCNNGG | 5 cut(s) | 128, 398, 615, 757, 955 |
| BssMI | GATC | 4 cut(s) | 61, 124, 202, 700 |
| BssNAI | GTATAC | 1 cut(s) | 352 |
| BssT1I | CCWWGG | 4 cut(s) | 128, 615, 757, 955 |
| Bst1107I | GTATAC | 1 cut(s) | 352 |
| Bst2UI | CCWGG | 1 cut(s) | 89 |
| Bst4CI | ACNGT | 4 cut(s) | 159, 356, 434, 989 |
| Bst6I | CTCTTC | 2 cut(s) | 930, 1014 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 872 |
| BstBAI | YACGTR | 1 cut(s) | 36 |
| BstBI | TTCGAA | 1 cut(s) | 487 |
| BstC8I | GCNNGC | 2 cut(s) | 495, 624 |
| BstDEI | CTNAG | 5 cut(s) | 183, 191, 296, 876, 898 |
| BstDSI | CCRYGG | 1 cut(s) | 757 |
| BstF5I | GGATG | 5 cut(s) | 127, 390, 516, 1213, 1228 |
| BstFNI | CGCG | 1 cut(s) | 410 |
| BstHHI | GCGC | 2 cut(s) | 786, 1144 |
| BstKTI | GATC | 4 cut(s) | 64, 127, 205, 703 |
| BstMAI | GTCTC | 1 cut(s) | 1011 |
| BstMBI | GATC | 4 cut(s) | 61, 124, 202, 700 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 14, 290, 499, 872, 899, 929, 1148 |
| BstNI | CCWGG | 1 cut(s) | 89 |
| BstSCI | CCNGG | 2 cut(s) | 87, 397 |
| BstSLI | GKGCMC | 1 cut(s) | 538 |
| BstUI | CGCG | 1 cut(s) | 410 |
| BstV1I | GCAGC | 1 cut(s) | 11 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BstZ17I | GTATAC | 1 cut(s) | 352 |
| BsuI | GTATCC | 2 cut(s) | 362, 655 |
| BtgI | CCRYGG | 1 cut(s) | 757 |
| BtsCI | GGATG | 5 cut(s) | 127, 390, 516, 1213, 1228 |
| BtsI | GCAGTG | 1 cut(s) | 137 |
| BtsIMutI | CAGTG | 2 cut(s) | 137, 361 |
| BveI | ACCTGC | 1 cut(s) | 898 |
| Cac8I | GCNNGC | 2 cut(s) | 495, 624 |
| CfoI | GCGC | 2 cut(s) | 786, 1144 |
| Cfr13I | GGNCC | 2 cut(s) | 838, 1027 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 3 cut(s) | 180, 435, 1069 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 802, 837 |
| CviAII | CATG | 4 cut(s) | 374, 758, 862, 967 |
| CviQI | GTAC | 3 cut(s) | 180, 435, 1069 |
| DdeI | CTNAG | 5 cut(s) | 183, 191, 296, 876, 898 |
| DpnI | GATC | 4 cut(s) | 63, 126, 204, 702 |
| DpnII | GATC | 4 cut(s) | 61, 124, 202, 700 |
| Eam1104I | CTCTTC | 2 cut(s) | 930, 1014 |
| EarI | CTCTTC | 2 cut(s) | 930, 1014 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 4 cut(s) | 128, 615, 757, 955 |
| Eco47I | GGWCC | 2 cut(s) | 838, 1027 |
| Eco72I | CACGTG | 1 cut(s) | 36 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1027 |
| EcoRII | CCWGG | 1 cut(s) | 87 |
| EcoT14I | CCWWGG | 4 cut(s) | 128, 615, 757, 955 |
| EcoT22I | ATGCAT | 1 cut(s) | 863 |
| ErhI | CCWWGG | 4 cut(s) | 128, 615, 757, 955 |
| Esp3I | CGTCTC | 1 cut(s) | 1011 |
| FaeI | CATG | 4 cut(s) | 377, 761, 865, 970 |
| FaqI | GGGAC | 2 cut(s) | 977, 1243 |
| FatI | CATG | 4 cut(s) | 373, 757, 861, 966 |
| FauNDI | CATATG | 1 cut(s) | 711 |
| FblI | GTMKAC | 3 cut(s) | 351, 413, 1099 |
| Fnu4HI | GCNGC | 2 cut(s) | 25, 627 |
| FokI | GGATG | 5 cut(s) | 134, 397, 503, 1220, 1235 |
| Fsp4HI | GCNGC | 2 cut(s) | 25, 627 |
| FspBI | CTAG | 6 cut(s) | 438, 539, 929, 998, 1152, 1309 |
| GlaI | GCGC | 2 cut(s) | 785, 1143 |
| GluI | GCNGC | 2 cut(s) | 25, 627 |
| GsaI | CCCAGC | 1 cut(s) | 964 |
| HapII | CCGG | 3 cut(s) | 398, 841, 933 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 2 cut(s) | 786, 1144 |
| Hin1II | CATG | 4 cut(s) | 377, 761, 865, 970 |
| Hin6I | GCGC | 2 cut(s) | 784, 1142 |
| HinP1I | GCGC | 2 cut(s) | 784, 1142 |
| HincII | GTYRAC | 1 cut(s) | 1100 |
| HindII | GTYRAC | 1 cut(s) | 1100 |
| HinfI | GANTC | 5 cut(s) | 133, 288, 422, 442, 808 |
| HpaII | CCGG | 3 cut(s) | 398, 841, 933 |
| HphI | GGTGA | 2 cut(s) | 236, 944 |
| Hpy166II | GTNNAC | 7 cut(s) | 33, 274, 352, 414, 536, 1071, 1100 |
| Hpy188I | TCNGA | 4 cut(s) | 51, 155, 384, 421 |
| Hpy188III | TCNNGA | 4 cut(s) | 803, 841, 1112, 1205 |
| Hpy8I | GTNNAC | 7 cut(s) | 33, 274, 352, 414, 536, 1071, 1100 |
| HpyAV | CCTTC | 4 cut(s) | 13, 67, 715, 769 |
| HpyCH4III | ACNGT | 4 cut(s) | 159, 356, 434, 989 |
| HpyCH4IV | ACGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 5 cut(s) | 493, 536, 715, 861, 907 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 14, 290, 499, 872, 899, 929, 1148 |
| HpyF3I | CTNAG | 5 cut(s) | 183, 191, 296, 876, 898 |
| HpySE526I | ACGT | 1 cut(s) | 35 |
| Hsp92II | CATG | 4 cut(s) | 377, 761, 865, 970 |
| HspAI | GCGC | 2 cut(s) | 784, 1142 |
| Kpn2I | TCCGGA | 1 cut(s) | 840 |
| Kzo9I | GATC | 4 cut(s) | 61, 124, 202, 700 |
| LguI | GCTCTTC | 2 cut(s) | 930, 1014 |
| LmnI | GCTCC | 5 cut(s) | 187, 478, 561, 619, 1195 |
| Lsp1109I | GCAGC | 1 cut(s) | 11 |
| LweI | GCATC | 2 cut(s) | 525, 994 |
| MaeI | CTAG | 6 cut(s) | 438, 539, 929, 998, 1152, 1309 |
| MaeII | ACGT | 1 cut(s) | 35 |
| MaeIII | GTNAC | 3 cut(s) | 224, 809, 983 |
| MalI | GATC | 4 cut(s) | 63, 126, 204, 702 |
| MboI | GATC | 4 cut(s) | 61, 124, 202, 700 |
| MboII | GAAGA | 6 cut(s) | 71, 82, 608, 784, 917, 1001 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MhlI | GDGCHC | 1 cut(s) | 538 |
| MluCI | AATT | 4 cut(s) | 403, 752, 796, 936 |
| MlyI | GAGTC | 3 cut(s) | 416, 436, 817 |
| MmeI | TCCRAC | 1 cut(s) | 1136 |
| Mph1103I | ATGCAT | 1 cut(s) | 863 |
| MroI | TCCGGA | 1 cut(s) | 840 |
| MseI | TTAA | 5 cut(s) | 588, 611, 737, 941, 1284 |
| MslI | CAYNNNNRTG | 1 cut(s) | 816 |
| MspI | CCGG | 3 cut(s) | 398, 841, 933 |
| MspR9I | CCNGG | 2 cut(s) | 89, 399 |
| Mva1269I | GAATGC | 1 cut(s) | 495 |
| MvaI | CCWGG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 14, 290, 499, 872, 899, 929, 1148 |
| NciI | CCSGG | 1 cut(s) | 399 |
| NcoI | CCATGG | 1 cut(s) | 757 |
| NdeI | CATATG | 1 cut(s) | 711 |
| NdeII | GATC | 4 cut(s) | 61, 124, 202, 700 |
| NlaIII | CATG | 4 cut(s) | 377, 761, 865, 970 |
| NlaIV | GGNNCC | 2 cut(s) | 1191, 1302 |
| NmuCI | GTSAC | 3 cut(s) | 224, 809, 983 |
| NsiI | ATGCAT | 1 cut(s) | 863 |
| NspV | TTCGAA | 1 cut(s) | 487 |
| OliI | CACNNNNGTG | 1 cut(s) | 816 |
| PaqCI | CACCTGC | 1 cut(s) | 898 |
| PciSI | GCTCTTC | 2 cut(s) | 930, 1014 |
| PctI | GAATGC | 1 cut(s) | 495 |
| PfeI | GAWTC | 2 cut(s) | 133, 288 |
| PkrI | GCNGC | 2 cut(s) | 26, 628 |
| PleI | GAGTC | 3 cut(s) | 416, 436, 816 |
| PmaCI | CACGTG | 1 cut(s) | 36 |
| PmlI | CACGTG | 1 cut(s) | 36 |
| PpsI | GAGTC | 3 cut(s) | 416, 436, 816 |
| Ppu21I | YACGTR | 1 cut(s) | 36 |
| PpuMI | RGGWCCY | 1 cut(s) | 1027 |
| PshBI | ATTAAT | 1 cut(s) | 1284 |
| Psp5II | RGGWCCY | 1 cut(s) | 1027 |
| Psp6I | CCWGG | 1 cut(s) | 87 |
| PspCI | CACGTG | 1 cut(s) | 36 |
| PspFI | CCCAGC | 1 cut(s) | 960 |
| PspGI | CCWGG | 1 cut(s) | 87 |
| PspN4I | GGNNCC | 2 cut(s) | 1191, 1302 |
| PspPI | GGNCC | 2 cut(s) | 838, 1027 |
| PspPPI | RGGWCCY | 1 cut(s) | 1027 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| RsaI | GTAC | 3 cut(s) | 181, 436, 1070 |
| RsaNI | GTAC | 3 cut(s) | 180, 435, 1069 |
| RseI | CAYNNNNRTG | 1 cut(s) | 816 |
| SalI | GTCGAC | 1 cut(s) | 1098 |
| SapI | GCTCTTC | 2 cut(s) | 930, 1014 |
| SaqAI | TTAA | 5 cut(s) | 588, 611, 737, 941, 1284 |
| SatI | GCNGC | 2 cut(s) | 25, 627 |
| Sau3AI | GATC | 4 cut(s) | 61, 124, 202, 700 |
| Sau96I | GGNCC | 2 cut(s) | 838, 1027 |
| SchI | GAGTC | 3 cut(s) | 416, 436, 817 |
| ScrFI | CCNGG | 2 cut(s) | 89, 399 |
| SduI | GDGCHC | 1 cut(s) | 538 |
| SfaNI | GCATC | 2 cut(s) | 525, 994 |
| SfuI | TTCGAA | 1 cut(s) | 487 |
| SinI | GGWCC | 2 cut(s) | 838, 1027 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 816 |
| Sse9I | AATT | 4 cut(s) | 403, 752, 796, 936 |
| SsiI | CCGC | 2 cut(s) | 8, 626 |
| SspMI | CTAG | 6 cut(s) | 438, 539, 929, 998, 1152, 1309 |
| StyD4I | CCNGG | 2 cut(s) | 87, 397 |
| StyI | CCWWGG | 4 cut(s) | 128, 615, 757, 955 |
| TaaI | ACNGT | 4 cut(s) | 159, 356, 434, 989 |
| TaiI | ACGT | 1 cut(s) | 38 |
| TaqI | TCGA | 6 cut(s) | 286, 425, 487, 1002, 1093, 1099 |
| TaqII | GACCGA | 1 cut(s) | 1065 |
| TasI | AATT | 4 cut(s) | 403, 752, 796, 936 |
| TauI | GCSGC | 1 cut(s) | 629 |
| TfiI | GAWTC | 2 cut(s) | 133, 288 |
| Tru1I | TTAA | 5 cut(s) | 588, 611, 737, 941, 1284 |
| Tru9I | TTAA | 5 cut(s) | 588, 611, 737, 941, 1284 |
| TscAI | CASTG | 2 cut(s) | 144, 361 |
| TseFI | GTSAC | 3 cut(s) | 224, 809, 983 |
| TseI | GCWGC | 1 cut(s) | 24 |
| Tsp45I | GTSAC | 3 cut(s) | 224, 809, 983 |
| TspDTI | ATGAA | 3 cut(s) | 809, 861, 1001 |
| TspRI | CASTG | 2 cut(s) | 144, 361 |
| VneI | GTGCAC | 1 cut(s) | 534 |
| VpaK11BI | GGWCC | 2 cut(s) | 838, 1027 |
| VspI | ATTAAT | 1 cut(s) | 1284 |
| XapI | RAATTY | 4 cut(s) | 403, 752, 796, 936 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 95, 755 |
| XmiI | GTMKAC | 3 cut(s) | 351, 413, 1099 |
| XspI | CTAG | 6 cut(s) | 438, 539, 929, 998, 1152, 1309 |
| Zsp2I | ATGCAT | 1 cut(s) | 863 |