ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 886 |
| Acc65I | GGTACC | 1 cut(s) | 166 |
| AccB1I | GGYRCC | 1 cut(s) | 166 |
| AccI | GTMKAC | 1 cut(s) | 496 |
| AcoI | YGGCCR | 1 cut(s) | 645 |
| AcsI | RAATTY | 3 cut(s) | 25, 408, 772 |
| AcuI | CTGAAG | 1 cut(s) | 662 |
| AdeI | CACNNNGTG | 1 cut(s) | 752 |
| AfaI | GTAC | 6 cut(s) | 17, 168, 400, 686, 735, 805 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 755 |
| AflIII | ACRYGT | 1 cut(s) | 491 |
| AgsI | TTSAA | 3 cut(s) | 188, 430, 830 |
| AjnI | CCWGG | 1 cut(s) | 577 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 163, 195, 254, 286 |
| AluBI | AGCT | 6 cut(s) | 44, 116, 222, 329, 524, 785 |
| AluI | AGCT | 6 cut(s) | 44, 116, 222, 329, 524, 785 |
| Alw26I | GTCTC | 4 cut(s) | 290, 554, 914, 931 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 578 |
| AoxI | GGCC | 1 cut(s) | 645 |
| ApeKI | GCWGC | 2 cut(s) | 89, 569 |
| ApoI | RAATTY | 3 cut(s) | 25, 408, 772 |
| AseI | ATTAAT | 1 cut(s) | 458 |
| Asp718I | GGTACC | 1 cut(s) | 166 |
| AspS9I | GGNCC | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 775 |
| AvaII | GGWCC | 1 cut(s) | 214 |
| BalI | TGGCCA | 1 cut(s) | 647 |
| BanI | GGYRCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 1 cut(s) | 431 |
| BbvI | GCAGC | 2 cut(s) | 76, 581 |
| BccI | CCATC | 4 cut(s) | 114, 128, 753, 773 |
| BciT130I | CCWGG | 1 cut(s) | 579 |
| BcoDI | GTCTC | 4 cut(s) | 290, 554, 914, 931 |
| BfaI | CTAG | 4 cut(s) | 117, 246, 330, 395 |
| BfuAI | ACCTGC | 1 cut(s) | 886 |
| BisI | GCNGC | 2 cut(s) | 90, 570 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 2 cut(s) | 91, 571 |
| Bme1390I | CCNGG | 1 cut(s) | 579 |
| Bme18I | GGWCC | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 1 cut(s) | 214 |
| BmiI | GGNNCC | 2 cut(s) | 168, 474 |
| BmrFI | CCNGG | 1 cut(s) | 579 |
| BmsI | GCATC | 1 cut(s) | 648 |
| BpiI | GAAGAC | 1 cut(s) | 431 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 911 |
| BpmI | CTGGAG | 1 cut(s) | 852 |
| Bpu10I | CCTNAGC | 1 cut(s) | 218 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BsaAI | YACGTR | 1 cut(s) | 359 |
| BsaI | GGTCTC | 1 cut(s) | 290 |
| BsaJI | CCNNGG | 1 cut(s) | 737 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 260, 290 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 755 |
| Bse1I | ACTGG | 3 cut(s) | 805, 811, 869 |
| Bse3DI | GCAATG | 1 cut(s) | 263 |
| BseBI | CCWGG | 1 cut(s) | 579 |
| BseDI | CCNNGG | 1 cut(s) | 737 |
| BseGI | GGATG | 3 cut(s) | 52, 139, 764 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 755 |
| BseMI | GCAATG | 1 cut(s) | 263 |
| BseMII | CTCAG | 3 cut(s) | 36, 209, 516 |
| BseNI | ACTGG | 3 cut(s) | 805, 811, 869 |
| BseRI | GAGGAG | 2 cut(s) | 91, 281 |
| BseXI | GCAGC | 2 cut(s) | 76, 581 |
| BseYI | CCCAGC | 1 cut(s) | 911 |
| BsgI | GTGCAG | 1 cut(s) | 774 |
| BshFI | GGCC | 1 cut(s) | 647 |
| BshNI | GGYRCC | 1 cut(s) | 166 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 755 |
| BsmAI | GTCTC | 4 cut(s) | 290, 554, 914, 931 |
| BsnI | GGCC | 1 cut(s) | 647 |
| Bso31I | GGTCTC | 1 cut(s) | 290 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| BspANI | GGCC | 1 cut(s) | 647 |
| BspCNI | CTCAG | 3 cut(s) | 37, 210, 517 |
| BspLI | GGNNCC | 2 cut(s) | 168, 474 |
| BspMI | ACCTGC | 1 cut(s) | 886 |
| BspT107I | GGYRCC | 1 cut(s) | 166 |
| BspTNI | GGTCTC | 1 cut(s) | 290 |
| BsrDI | GCAATG | 1 cut(s) | 263 |
| BsrI | ACTGG | 3 cut(s) | 805, 811, 869 |
| BssECI | CCNNGG | 1 cut(s) | 737 |
| BssNAI | GTATAC | 1 cut(s) | 497 |
| BssT1I | CCWWGG | 1 cut(s) | 737 |
| Bst1107I | GTATAC | 1 cut(s) | 497 |
| Bst2UI | CCWGG | 1 cut(s) | 579 |
| Bst4CI | ACNGT | 2 cut(s) | 640, 925 |
| Bst6I | CTCTTC | 2 cut(s) | 293, 721 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 543 |
| BstBAI | YACGTR | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 1 cut(s) | 224 |
| BstDEI | CTNAG | 4 cut(s) | 45, 218, 525, 891 |
| BstF5I | GGATG | 3 cut(s) | 52, 139, 764 |
| BstMAI | GTCTC | 4 cut(s) | 290, 554, 914, 931 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 543 |
| BstNI | CCWGG | 1 cut(s) | 579 |
| BstNSI | RCATGY | 2 cut(s) | 495, 541 |
| BstSCI | CCNGG | 1 cut(s) | 577 |
| BstSNI | TACGTA | 1 cut(s) | 359 |
| BstV1I | GCAGC | 2 cut(s) | 76, 581 |
| BstV2I | GAAGAC | 1 cut(s) | 431 |
| BstZ17I | GTATAC | 1 cut(s) | 497 |
| BsuRI | GGCC | 1 cut(s) | 647 |
| BtsCI | GGATG | 3 cut(s) | 52, 139, 764 |
| BtsI | GCAGTG | 2 cut(s) | 579, 851 |
| BtsIMutI | CAGTG | 2 cut(s) | 579, 851 |
| BveI | ACCTGC | 1 cut(s) | 886 |
| Cac8I | GCNNGC | 1 cut(s) | 224 |
| CaiI | CAGNNNCTG | 1 cut(s) | 578 |
| Cfr13I | GGNCC | 1 cut(s) | 214 |
| Csp6I | GTAC | 6 cut(s) | 16, 167, 399, 685, 734, 804 |
| CviAII | CATG | 5 cut(s) | 72, 492, 538, 588, 791 |
| CviQI | GTAC | 6 cut(s) | 16, 167, 399, 685, 734, 804 |
| DdeI | CTNAG | 4 cut(s) | 45, 218, 525, 891 |
| DraIII | CACNNNGTG | 1 cut(s) | 752 |
| EaeI | YGGCCR | 1 cut(s) | 645 |
| Eam1104I | CTCTTC | 2 cut(s) | 293, 721 |
| EarI | CTCTTC | 2 cut(s) | 293, 721 |
| Eco105I | TACGTA | 1 cut(s) | 359 |
| Eco130I | CCWWGG | 1 cut(s) | 737 |
| Eco31I | GGTCTC | 1 cut(s) | 290 |
| Eco47I | GGWCC | 1 cut(s) | 214 |
| Eco57I | CTGAAG | 1 cut(s) | 662 |
| EcoO109I | RGGNCCY | 1 cut(s) | 214 |
| EcoRII | CCWGG | 1 cut(s) | 577 |
| EcoT14I | CCWWGG | 1 cut(s) | 737 |
| EcoT22I | ATGCAT | 1 cut(s) | 539 |
| ErhI | CCWWGG | 1 cut(s) | 737 |
| FaeI | CATG | 5 cut(s) | 75, 495, 541, 591, 794 |
| FatI | CATG | 5 cut(s) | 71, 491, 537, 587, 790 |
| FblI | GTMKAC | 1 cut(s) | 496 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 570 |
| FokI | GGATG | 3 cut(s) | 39, 146, 771 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 570 |
| FspBI | CTAG | 4 cut(s) | 117, 246, 330, 395 |
| GluI | GCNGC | 2 cut(s) | 90, 570 |
| GsaI | CCCAGC | 1 cut(s) | 915 |
| GsuI | CTGGAG | 1 cut(s) | 852 |
| HaeIII | GGCC | 1 cut(s) | 647 |
| Hin1II | CATG | 5 cut(s) | 75, 495, 541, 591, 794 |
| HincII | GTYRAC | 1 cut(s) | 243 |
| HindII | GTYRAC | 1 cut(s) | 243 |
| HinfI | GANTC | 3 cut(s) | 49, 158, 482 |
| HphI | GGTGA | 1 cut(s) | 775 |
| Hpy166II | GTNNAC | 2 cut(s) | 243, 497 |
| Hpy188I | TCNGA | 2 cut(s) | 157, 204 |
| Hpy188III | TCNNGA | 3 cut(s) | 347, 680, 830 |
| Hpy8I | GTNNAC | 2 cut(s) | 243, 497 |
| HpyAV | CCTTC | 5 cut(s) | 43, 72, 205, 245, 415 |
| HpyCH4III | ACNGT | 2 cut(s) | 640, 925 |
| HpyCH4IV | ACGT | 1 cut(s) | 358 |
| HpyCH4V | TGCA | 3 cut(s) | 92, 537, 755 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 543 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 218, 525, 891 |
| HpySE526I | ACGT | 1 cut(s) | 358 |
| Hsp92II | CATG | 5 cut(s) | 75, 495, 541, 591, 794 |
| KpnI | GGTACC | 1 cut(s) | 170 |
| LmnI | GCTCC | 3 cut(s) | 113, 782, 871 |
| Lsp1109I | GCAGC | 2 cut(s) | 76, 581 |
| LweI | GCATC | 1 cut(s) | 648 |
| MaeI | CTAG | 4 cut(s) | 117, 246, 330, 395 |
| MaeII | ACGT | 1 cut(s) | 358 |
| MaeIII | GTNAC | 1 cut(s) | 483 |
| MboII | GAAGA | 6 cut(s) | 151, 280, 382, 431, 738, 876 |
| MfeI | CAATTG | 1 cut(s) | 444 |
| MlsI | TGGCCA | 1 cut(s) | 647 |
| MluCI | AATT | 9 cut(s) | 25, 361, 388, 408, 433, 444, 459, 772, 825 |
| MluNI | TGGCCA | 1 cut(s) | 647 |
| MlyI | GAGTC | 2 cut(s) | 58, 491 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 7 cut(s) | 69, 259, 316, 331, 594, 709, 895 |
| Mox20I | TGGCCA | 1 cut(s) | 647 |
| Mph1103I | ATGCAT | 1 cut(s) | 539 |
| MscI | TGGCCA | 1 cut(s) | 647 |
| MseI | TTAA | 3 cut(s) | 297, 317, 458 |
| MslI | CAYNNNNRTG | 1 cut(s) | 490 |
| Msp20I | TGGCCA | 1 cut(s) | 647 |
| MspA1I | CMGCKG | 1 cut(s) | 524 |
| MspR9I | CCNGG | 1 cut(s) | 579 |
| MunI | CAATTG | 1 cut(s) | 444 |
| MvaI | CCWGG | 1 cut(s) | 579 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 543 |
| NlaIII | CATG | 5 cut(s) | 75, 495, 541, 591, 794 |
| NlaIV | GGNNCC | 2 cut(s) | 168, 474 |
| NmuCI | GTSAC | 1 cut(s) | 483 |
| NsiI | ATGCAT | 1 cut(s) | 539 |
| NspI | RCATGY | 2 cut(s) | 495, 541 |
| PciI | ACATGT | 1 cut(s) | 491 |
| PfeI | GAWTC | 1 cut(s) | 158 |
| PkrI | GCNGC | 2 cut(s) | 91, 571 |
| PleI | GAGTC | 2 cut(s) | 57, 490 |
| PpsI | GAGTC | 2 cut(s) | 57, 490 |
| Ppu21I | YACGTR | 1 cut(s) | 359 |
| PpuMI | RGGWCCY | 1 cut(s) | 214 |
| PscI | ACATGT | 1 cut(s) | 491 |
| PshBI | ATTAAT | 1 cut(s) | 458 |
| Psp5II | RGGWCCY | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 577 |
| PspFI | CCCAGC | 1 cut(s) | 911 |
| PspGI | CCWGG | 1 cut(s) | 577 |
| PspN4I | GGNNCC | 2 cut(s) | 168, 474 |
| PspPI | GGNCC | 1 cut(s) | 214 |
| PspPPI | RGGWCCY | 1 cut(s) | 214 |
| PstNI | CAGNNNCTG | 1 cut(s) | 578 |
| PvuII | CAGCTG | 1 cut(s) | 524 |
| RsaI | GTAC | 6 cut(s) | 17, 168, 400, 686, 735, 805 |
| RsaNI | GTAC | 6 cut(s) | 16, 167, 399, 685, 734, 804 |
| RseI | CAYNNNNRTG | 1 cut(s) | 490 |
| SaqAI | TTAA | 3 cut(s) | 297, 317, 458 |
| SatI | GCNGC | 2 cut(s) | 90, 570 |
| Sau96I | GGNCC | 1 cut(s) | 214 |
| SchI | GAGTC | 2 cut(s) | 58, 491 |
| ScrFI | CCNGG | 1 cut(s) | 579 |
| SfaNI | GCATC | 1 cut(s) | 648 |
| SinI | GGWCC | 1 cut(s) | 214 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 490 |
| SnaBI | TACGTA | 1 cut(s) | 359 |
| Sse9I | AATT | 9 cut(s) | 25, 361, 388, 408, 433, 444, 459, 772, 825 |
| SspMI | CTAG | 4 cut(s) | 117, 246, 330, 395 |
| StyD4I | CCNGG | 1 cut(s) | 577 |
| StyI | CCWWGG | 1 cut(s) | 737 |
| TaaI | ACNGT | 2 cut(s) | 640, 925 |
| TaiI | ACGT | 1 cut(s) | 361 |
| TasI | AATT | 9 cut(s) | 25, 361, 388, 408, 433, 444, 459, 772, 825 |
| TfiI | GAWTC | 1 cut(s) | 158 |
| Tru1I | TTAA | 3 cut(s) | 297, 317, 458 |
| Tru9I | TTAA | 3 cut(s) | 297, 317, 458 |
| TscAI | CASTG | 2 cut(s) | 579, 851 |
| TseFI | GTSAC | 1 cut(s) | 483 |
| TseI | GCWGC | 2 cut(s) | 89, 569 |
| Tsp45I | GTSAC | 1 cut(s) | 483 |
| TspDTI | ATGAA | 2 cut(s) | 531, 627 |
| TspGWI | ACGGA | 1 cut(s) | 502 |
| TspRI | CASTG | 2 cut(s) | 579, 851 |
| VpaK11BI | GGWCC | 1 cut(s) | 214 |
| VspI | ATTAAT | 1 cut(s) | 458 |
| XapI | RAATTY | 3 cut(s) | 25, 408, 772 |
| XceI | RCATGY | 2 cut(s) | 495, 541 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 756 |
| XmiI | GTMKAC | 1 cut(s) | 496 |
| XspI | CTAG | 4 cut(s) | 117, 246, 330, 395 |
| Zsp2I | ATGCAT | 1 cut(s) | 539 |