Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 732 |
| Acc36I | ACCTGC | 1 cut(s) | 2532 |
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 873 |
| AclWI | GGATC | 3 cut(s) | 666, 3356, 3369 |
| AcoI | YGGCCR | 4 cut(s) | 54, 165, 3094, 3215 |
| AcsI | RAATTY | 8 cut(s) | 222, 880, 1849, 2230, 2306, 2554, 2595, 3395 |
| AcuI | CTGAAG | 8 cut(s) | 32, 1403, 1938, 2616, 2628, 3491, 3554, 3572 |
| AcvI | CACGTG | 2 cut(s) | 1064, 3191 |
| AcyI | GRCGYC | 2 cut(s) | 155, 729 |
| AfaI | GTAC | 7 cut(s) | 365, 513, 1914, 1945, 2298, 3355, 3494 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 681, 1074, 1075, 3301 |
| AflIII | ACRYGT | 5 cut(s) | 1368, 1448, 1899, 3188, 3190 |
| AhlI | ACTAGT | 2 cut(s) | 1831, 3080 |
| AjnI | CCWGG | 3 cut(s) | 3057, 3096, 3375 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 417, 449, 3489, 3521 |
| AleI | CACNNNNGTG | 2 cut(s) | 603, 1188 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2333, 2365 |
| Alw21I | GWGCWC | 2 cut(s) | 1145, 3529 |
| Alw26I | GTCTC | 9 cut(s) | 374, 459, 567, 576, 936, 1925, 1942, 2888, 3119 |
| AlwI | GGATC | 3 cut(s) | 666, 3356, 3369 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1616 |
| Ama87I | CYCGRG | 5 cut(s) | 32, 601, 1155, 3299, 3427 |
| AoxI | GGCC | 7 cut(s) | 54, 165, 1108, 2451, 3094, 3215, 3303 |
| ApoI | RAATTY | 8 cut(s) | 222, 880, 1849, 2230, 2306, 2554, 2595, 3395 |
| AseI | ATTAAT | 2 cut(s) | 2082, 2889 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1866, 2736 |
| AspLEI | GCGC | 4 cut(s) | 309, 825, 1209, 1828 |
| AspS9I | GGNCC | 4 cut(s) | 437, 1109, 2451, 3303 |
| AsuC2I | CCSGG | 9 cut(s) | 21, 33, 34, 602, 603, 1156, 1157, 3300, 3301 |
| AsuHPI | GGTGA | 3 cut(s) | 1020, 1257, 2215 |
| AvaI | CYCGRG | 5 cut(s) | 32, 601, 1155, 3299, 3427 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| AxyI | CCTNAGG | 1 cut(s) | 359 |
| BaeGI | GKGCMC | 1 cut(s) | 1069 |
| BalI | TGGCCA | 2 cut(s) | 3096, 3217 |
| BamHI | GGATCC | 1 cut(s) | 3361 |
| BanII | GRGCYC | 3 cut(s) | 32, 622, 3529 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 369, 401 |
| BbrPI | CACGTG | 2 cut(s) | 1064, 3191 |
| BbsI | GAAGAC | 1 cut(s) | 648 |
| Bbv12I | GWGCWC | 2 cut(s) | 1145, 3529 |
| BbvCI | CCTCAGC | 3 cut(s) | 1221, 1636, 3448 |
| BccI | CCATC | 8 cut(s) | 250, 770, 1321, 1618, 2502, 2703, 3017, 3130 |
| BceAI | ACGGC | 4 cut(s) | 1306, 2162, 2288, 3254 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 380, 414, 1037, 1071 |
| BciT130I | CCWGG | 3 cut(s) | 3059, 3098, 3377 |
| BclI | TGATCA | 1 cut(s) | 1009 |
| BcnI | CCSGG | 9 cut(s) | 21, 33, 34, 602, 603, 1156, 1157, 3300, 3301 |
| BcoDI | GTCTC | 9 cut(s) | 374, 459, 567, 576, 936, 1925, 1942, 2888, 3119 |
| BcuI | ACTAGT | 2 cut(s) | 1831, 3080 |
| BfoI | RGCGCY | 2 cut(s) | 826, 1829 |
| BfuAI | ACCTGC | 1 cut(s) | 2532 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 130 |
| BglII | AGATCT | 3 cut(s) | 95, 787, 3089 |
| BlpI | GCTNAGC | 3 cut(s) | 689, 1581, 3528 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmeT110I | CYCGRG | 5 cut(s) | 32, 601, 1155, 3299, 3427 |
| BmgT120I | GGNCC | 4 cut(s) | 437, 1109, 2451, 3303 |
| BmiI | GGNNCC | 7 cut(s) | 29, 123, 619, 711, 3293, 3304, 3363 |
| BmrI | ACTGGG | 2 cut(s) | 714, 3621 |
| BmuI | ACTGGG | 2 cut(s) | 714, 3621 |
| BpiI | GAAGAC | 1 cut(s) | 648 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1922, 1954, 2944, 2976 |
| BpmI | CTGGAG | 3 cut(s) | 636, 1119, 2321 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1221, 1636, 3448 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 689, 1581, 3528 |
| BpuEI | CTTGAG | 7 cut(s) | 870, 1093, 1539, 1924, 2024, 2849, 2971 |
| BpuMI | CCSGG | 9 cut(s) | 21, 33, 34, 602, 603, 1156, 1157, 3300, 3301 |
| Bsa29I | ATCGAT | 1 cut(s) | 3134 |
| BsaAI | YACGTR | 2 cut(s) | 1064, 3191 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2852 |
| BsaHI | GRCGYC | 2 cut(s) | 155, 729 |
| BsaI | GGTCTC | 1 cut(s) | 567 |
| BsaWI | WCCGGW | 2 cut(s) | 444, 1791 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 681, 1074, 1075, 3301 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse1I | ACTGG | 5 cut(s) | 709, 1031, 1136, 2304, 3616 |
| Bse21I | CCTNAGG | 1 cut(s) | 359 |
| Bse3DI | GCAATG | 3 cut(s) | 291, 1236, 1870 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2852 |
| BseBI | CCWGG | 3 cut(s) | 3059, 3098, 3377 |
| BseCI | ATCGAT | 1 cut(s) | 3134 |
| BseGI | GGATG | 5 cut(s) | 242, 1336, 2035, 3028, 3067 |
| BseJI | GATNNNNATC | 1 cut(s) | 2852 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 681, 1074, 1075, 3301 |
| BseMI | GCAATG | 3 cut(s) | 291, 1236, 1870 |
| BseMII | CTCAG | 9 cut(s) | 83, 218, 288, 829, 1212, 1245, 1650, 3462, 3542 |
| BseNI | ACTGG | 5 cut(s) | 709, 1031, 1136, 2304, 3616 |
| BseRI | GAGGAG | 7 cut(s) | 78, 81, 84, 93, 1389, 1624, 3436 |
| BseSI | GKGCMC | 1 cut(s) | 1069 |
| BseYI | CCCAGC | 2 cut(s) | 371, 2778 |
| BsgI | GTGCAG | 5 cut(s) | 681, 942, 2427, 3126, 3258 |
| Bsh1236I | CGCG | 1 cut(s) | 873 |
| BshFI | GGCC | 7 cut(s) | 56, 167, 1110, 2453, 3096, 3217, 3305 |
| BshVI | ATCGAT | 1 cut(s) | 3134 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1145, 3529 |
| BsiHKCI | CYCGRG | 5 cut(s) | 32, 601, 1155, 3299, 3427 |
| BslFI | GGGAC | 5 cut(s) | 544, 1137, 1139, 1402, 3297 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 681, 1074, 1075, 3301 |
| BsmAI | GTCTC | 9 cut(s) | 374, 459, 567, 576, 936, 1925, 1942, 2888, 3119 |
| BsmFI | GGGAC | 5 cut(s) | 544, 1137, 1139, 1402, 3297 |
| BsmI | GAATGC | 2 cut(s) | 2461, 2506 |
| BsnI | GGCC | 7 cut(s) | 56, 167, 1110, 2453, 3096, 3217, 3305 |
| Bso31I | GGTCTC | 1 cut(s) | 567 |
| BsoBI | CYCGRG | 5 cut(s) | 32, 601, 1155, 3299, 3427 |
| Bsp1286I | GDGCHC | 5 cut(s) | 32, 622, 1069, 1145, 3529 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 689, 1581, 3528 |
| BspANI | GGCC | 7 cut(s) | 56, 167, 1110, 2453, 3096, 3217, 3305 |
| BspCNI | CTCAG | 9 cut(s) | 84, 219, 289, 828, 1213, 1246, 1649, 3461, 3541 |
| BspDI | ATCGAT | 1 cut(s) | 3134 |
| BspFNI | CGCG | 1 cut(s) | 873 |
| BspHI | TCATGA | 3 cut(s) | 2614, 2742, 2856 |
| BspLI | GGNNCC | 7 cut(s) | 29, 123, 619, 711, 3293, 3304, 3363 |
| BspMAI | CTGCAG | 4 cut(s) | 319, 393, 1246, 2626 |
| BspMI | ACCTGC | 1 cut(s) | 2532 |
| BspPI | GGATC | 3 cut(s) | 666, 3356, 3369 |
| BspQI | GCTCTTC | 1 cut(s) | 2154 |
| BspTNI | GGTCTC | 1 cut(s) | 567 |
| BsrDI | GCAATG | 3 cut(s) | 291, 1236, 1870 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BsrI | ACTGG | 5 cut(s) | 709, 1031, 1136, 2304, 3616 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssNI | GRCGYC | 2 cut(s) | 155, 729 |
| BssT1I | CCWWGG | 3 cut(s) | 971, 1483, 2874 |
| Bst2UI | CCWGG | 3 cut(s) | 3059, 3098, 3377 |
| Bst4CI | ACNGT | 8 cut(s) | 17, 1017, 1190, 1288, 1574, 1936, 2267, 2795 |
| Bst6I | CTCTTC | 3 cut(s) | 372, 1704, 2154 |
| BstACI | GRCGYC | 2 cut(s) | 155, 729 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 323 |
| BstBAI | YACGTR | 2 cut(s) | 1064, 3191 |
| BstF5I | GGATG | 5 cut(s) | 242, 1336, 2035, 3028, 3067 |
| BstFNI | CGCG | 1 cut(s) | 873 |
| BstH2I | RGCGCY | 2 cut(s) | 826, 1829 |
| BstHHI | GCGC | 4 cut(s) | 309, 825, 1209, 1828 |
| BstMAI | GTCTC | 9 cut(s) | 374, 459, 567, 576, 936, 1925, 1942, 2888, 3119 |
| BstNI | CCWGG | 3 cut(s) | 3059, 3098, 3377 |
| BstNSI | RCATGY | 6 cut(s) | 1372, 1452, 1891, 1903, 2094, 2587 |
| BstSLI | GKGCMC | 1 cut(s) | 1069 |
| BstUI | CGCG | 1 cut(s) | 873 |
| BstV2I | GAAGAC | 1 cut(s) | 648 |
| BstX2I | RGATCY | 5 cut(s) | 95, 671, 787, 3089, 3361 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3181, 3383 |
| BstYI | RGATCY | 5 cut(s) | 95, 671, 787, 3089, 3361 |
| Bsu15I | ATCGAT | 1 cut(s) | 3134 |
| Bsu36I | CCTNAGG | 1 cut(s) | 359 |
| BsuRI | GGCC | 7 cut(s) | 56, 167, 1110, 2453, 3096, 3217, 3305 |
| BsuTUI | ATCGAT | 1 cut(s) | 3134 |
| BtgZI | GCGATG | 1 cut(s) | 2136 |
| BtsCI | GGATG | 5 cut(s) | 242, 1336, 2035, 3028, 3067 |
| BtsI | GCAGTG | 3 cut(s) | 1344, 2850, 3143 |
| BtsIMutI | CAGTG | 9 cut(s) | 702, 1143, 1195, 1344, 1579, 2272, 2800, 2850, 3143 |
| BveI | ACCTGC | 1 cut(s) | 2532 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1616 |
| CciI | TCATGA | 3 cut(s) | 2614, 2742, 2856 |
| CfoI | GCGC | 4 cut(s) | 309, 825, 1209, 1828 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 4 cut(s) | 437, 1109, 2451, 3303 |
| Cfr9I | CCCGGG | 4 cut(s) | 32, 601, 1155, 3299 |
| ClaI | ATCGAT | 1 cut(s) | 3134 |
| CseI | GACGC | 4 cut(s) | 144, 465, 1333, 2157 |
| Csp6I | GTAC | 7 cut(s) | 364, 512, 1913, 1944, 2297, 3354, 3493 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 315, 350 |
| CviQI | GTAC | 7 cut(s) | 364, 512, 1913, 1944, 2297, 3354, 3493 |
| DraI | TTTAAA | 2 cut(s) | 1668, 3462 |
| EaeI | YGGCCR | 4 cut(s) | 54, 165, 3094, 3215 |
| Eam1104I | CTCTTC | 3 cut(s) | 372, 1704, 2154 |
| EarI | CTCTTC | 3 cut(s) | 372, 1704, 2154 |
| EciI | GGCGGA | 2 cut(s) | 75, 158 |
| Ecl136II | GAGCTC | 1 cut(s) | 3527 |
| Eco130I | CCWWGG | 3 cut(s) | 971, 1483, 2874 |
| Eco24I | GRGCYC | 3 cut(s) | 32, 622, 3529 |
| Eco31I | GGTCTC | 1 cut(s) | 567 |
| Eco32I | GATATC | 1 cut(s) | 2258 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| Eco53kI | GAGCTC | 1 cut(s) | 3527 |
| Eco57I | CTGAAG | 8 cut(s) | 32, 1403, 1938, 2616, 2628, 3491, 3554, 3572 |
| Eco72I | CACGTG | 2 cut(s) | 1064, 3191 |
| Eco81I | CCTNAGG | 1 cut(s) | 359 |
| Eco88I | CYCGRG | 5 cut(s) | 32, 601, 1155, 3299, 3427 |
| EcoICRI | GAGCTC | 1 cut(s) | 3527 |
| EcoRI | GAATTC | 4 cut(s) | 222, 1849, 2230, 2554 |
| EcoRII | CCWGG | 3 cut(s) | 3057, 3096, 3375 |
| EcoRV | GATATC | 1 cut(s) | 2258 |
| EcoT14I | CCWWGG | 3 cut(s) | 971, 1483, 2874 |
| EcoT22I | ATGCAT | 1 cut(s) | 2096 |
| EcoT38I | GRGCYC | 3 cut(s) | 32, 622, 3529 |
| ErhI | CCWWGG | 3 cut(s) | 971, 1483, 2874 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1569, 1601 |
| FaqI | GGGAC | 5 cut(s) | 544, 1137, 1139, 1402, 3297 |
| FauI | CCCGC | 1 cut(s) | 126 |
| FauNDI | CATATG | 2 cut(s) | 2358, 3501 |
| FbaI | TGATCA | 1 cut(s) | 1009 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| FokI | GGATG | 5 cut(s) | 229, 1343, 2042, 3035, 3074 |
| FriOI | GRGCYC | 3 cut(s) | 32, 622, 3529 |
| GlaI | GCGC | 4 cut(s) | 308, 824, 1208, 1827 |
| GsaI | CCCAGC | 2 cut(s) | 375, 2782 |
| GsuI | CTGGAG | 3 cut(s) | 636, 1119, 2321 |
| HaeII | RGCGCY | 2 cut(s) | 826, 1829 |
| HaeIII | GGCC | 7 cut(s) | 56, 167, 1110, 2453, 3096, 3217, 3305 |
| HgaI | GACGC | 4 cut(s) | 144, 465, 1333, 2157 |
| HhaI | GCGC | 4 cut(s) | 309, 825, 1209, 1828 |
| Hin1I | GRCGYC | 2 cut(s) | 155, 729 |
| Hin6I | GCGC | 4 cut(s) | 307, 823, 1207, 1826 |
| HinP1I | GCGC | 4 cut(s) | 307, 823, 1207, 1826 |
| HincII | GTYRAC | 2 cut(s) | 480, 968 |
| HindII | GTYRAC | 2 cut(s) | 480, 968 |
| HindIII | AAGCTT | 4 cut(s) | 213, 1583, 1877, 2195 |
| HphI | GGTGA | 3 cut(s) | 1020, 1257, 2215 |
| Hpy166II | GTNNAC | 6 cut(s) | 13, 480, 968, 1193, 2270, 2297 |
| Hpy8I | GTNNAC | 6 cut(s) | 13, 480, 968, 1193, 2270, 2297 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 106, 160, 163, 812, 1327 |
| HpyAV | CCTTC | 9 cut(s) | 653, 685, 1035, 2396, 2652, 3028, 3305, 3338, 3578 |
| HpyCH4III | ACNGT | 8 cut(s) | 17, 1017, 1190, 1288, 1574, 1936, 2267, 2795 |
| HpyCH4IV | ACGT | 5 cut(s) | 729, 810, 1063, 2998, 3190 |
| HpySE526I | ACGT | 5 cut(s) | 729, 810, 1063, 2998, 3190 |
| Hsp92I | GRCGYC | 2 cut(s) | 155, 729 |
| HspAI | GCGC | 4 cut(s) | 307, 823, 1207, 1826 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| Ksp22I | TGATCA | 1 cut(s) | 1009 |
| LguI | GCTCTTC | 1 cut(s) | 2154 |
| LmnI | GCTCC | 7 cut(s) | 27, 121, 304, 617, 1402, 1637, 1963 |
| MaeII | ACGT | 5 cut(s) | 729, 810, 1063, 2998, 3190 |
| MfeI | CAATTG | 3 cut(s) | 1536, 2942, 3179 |
| MflI | RGATCY | 5 cut(s) | 95, 671, 787, 3089, 3361 |
| MhlI | GDGCHC | 5 cut(s) | 32, 622, 1069, 1145, 3529 |
| MlsI | TGGCCA | 2 cut(s) | 3096, 3217 |
| MluNI | TGGCCA | 2 cut(s) | 3096, 3217 |
| MlyI | GAGTC | 2 cut(s) | 526, 3419 |
| MmeI | TCCRAC | 5 cut(s) | 5, 919, 1463, 2268, 3253 |
| Mox20I | TGGCCA | 2 cut(s) | 3096, 3217 |
| Mph1103I | ATGCAT | 1 cut(s) | 2096 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1866, 2736 |
| MscI | TGGCCA | 2 cut(s) | 3096, 3217 |
| MslI | CAYNNNNRTG | 5 cut(s) | 603, 737, 1188, 2499, 2793 |
| Msp20I | TGGCCA | 2 cut(s) | 3096, 3217 |
| MspA1I | CMGCKG | 3 cut(s) | 127, 1220, 3592 |
| MunI | CAATTG | 3 cut(s) | 1536, 2942, 3179 |
| Mva1269I | GAATGC | 2 cut(s) | 2461, 2506 |
| MvaI | CCWGG | 3 cut(s) | 3059, 3098, 3377 |
| MvnI | CGCG | 1 cut(s) | 873 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NciI | CCSGG | 9 cut(s) | 21, 33, 34, 602, 603, 1156, 1157, 3300, 3301 |
| NdeI | CATATG | 2 cut(s) | 2358, 3501 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NlaIV | GGNNCC | 7 cut(s) | 29, 123, 619, 711, 3293, 3304, 3363 |
| NmuCI | GTSAC | 4 cut(s) | 462, 730, 1181, 2924 |
| NsiI | ATGCAT | 1 cut(s) | 2096 |
| NspI | RCATGY | 6 cut(s) | 1372, 1452, 1891, 1903, 2094, 2587 |
| OliI | CACNNNNGTG | 2 cut(s) | 603, 1188 |
| PaeI | GCATGC | 1 cut(s) | 2094 |
| PaeR7I | CTCGAG | 1 cut(s) | 3427 |
| PagI | TCATGA | 3 cut(s) | 2614, 2742, 2856 |
| PciI | ACATGT | 3 cut(s) | 1368, 1448, 1899 |
| PciSI | GCTCTTC | 1 cut(s) | 2154 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 807 |
| PctI | GAATGC | 2 cut(s) | 2461, 2506 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1866, 2736 |
| PfoI | TCCNGGA | 1 cut(s) | 3375 |
| PleI | GAGTC | 2 cut(s) | 526, 3419 |
| PmaCI | CACGTG | 2 cut(s) | 1064, 3191 |
| PmlI | CACGTG | 2 cut(s) | 1064, 3191 |
| PpsI | GAGTC | 2 cut(s) | 526, 3419 |
| Ppu21I | YACGTR | 2 cut(s) | 1064, 3191 |
| PscI | ACATGT | 3 cut(s) | 1368, 1448, 1899 |
| PshBI | ATTAAT | 2 cut(s) | 2082, 2889 |
| Psp124BI | GAGCTC | 1 cut(s) | 3529 |
| Psp6I | CCWGG | 3 cut(s) | 3057, 3096, 3375 |
| PspCI | CACGTG | 2 cut(s) | 1064, 3191 |
| PspFI | CCCAGC | 2 cut(s) | 371, 2778 |
| PspGI | CCWGG | 3 cut(s) | 3057, 3096, 3375 |
| PspN4I | GGNNCC | 7 cut(s) | 29, 123, 619, 711, 3293, 3304, 3363 |
| PspPI | GGNCC | 4 cut(s) | 437, 1109, 2451, 3303 |
| PspXI | VCTCGAGB | 1 cut(s) | 3427 |
| PstI | CTGCAG | 4 cut(s) | 319, 393, 1246, 2626 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1616 |
| PsuI | RGATCY | 5 cut(s) | 95, 671, 787, 3089, 3361 |
| PvuII | CAGCTG | 2 cut(s) | 1220, 3592 |
| RsaI | GTAC | 7 cut(s) | 365, 513, 1914, 1945, 2298, 3355, 3494 |
| RsaNI | GTAC | 7 cut(s) | 364, 512, 1913, 1944, 2297, 3354, 3493 |
| RseI | CAYNNNNRTG | 5 cut(s) | 603, 737, 1188, 2499, 2793 |
| SacI | GAGCTC | 1 cut(s) | 3529 |
| SapI | GCTCTTC | 1 cut(s) | 2154 |
| Sau96I | GGNCC | 4 cut(s) | 437, 1109, 2451, 3303 |
| SchI | GAGTC | 2 cut(s) | 526, 3419 |
| SduI | GDGCHC | 5 cut(s) | 32, 622, 1069, 1145, 3529 |
| Sfr274I | CTCGAG | 1 cut(s) | 3427 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SlaI | CTCGAG | 1 cut(s) | 3427 |
| SmaI | CCCGGG | 4 cut(s) | 34, 603, 1157, 3301 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 603, 737, 1188, 2499, 2793 |
| SmlI | CTYRAG | 8 cut(s) | 885, 1072, 1554, 1939, 2003, 2828, 2950, 3427 |
| SmoI | CTYRAG | 8 cut(s) | 885, 1072, 1554, 1939, 2003, 2828, 2950, 3427 |
| SpeI | ACTAGT | 2 cut(s) | 1831, 3080 |
| SphI | GCATGC | 1 cut(s) | 2094 |
| SspI | AATATT | 6 cut(s) | 763, 1672, 1782, 2485, 2575, 2911 |
| SstI | GAGCTC | 1 cut(s) | 3529 |
| StyI | CCWWGG | 3 cut(s) | 971, 1483, 2874 |
| TaaI | ACNGT | 8 cut(s) | 17, 1017, 1190, 1288, 1574, 1936, 2267, 2795 |
| TaiI | ACGT | 5 cut(s) | 732, 813, 1066, 3001, 3193 |
| TaqI | TCGA | 8 cut(s) | 41, 104, 218, 807, 1325, 3134, 3154, 3428 |
| TatI | WGTACW | 2 cut(s) | 2296, 3353 |
| TauI | GCSGC | 5 cut(s) | 118, 127, 133, 167, 1061 |
| TscAI | CASTG | 9 cut(s) | 709, 1143, 1195, 1344, 1579, 2272, 2800, 2850, 3150 |
| TseFI | GTSAC | 4 cut(s) | 462, 730, 1181, 2924 |
| Tsp45I | GTSAC | 4 cut(s) | 462, 730, 1181, 2924 |
| TspGWI | ACGGA | 2 cut(s) | 2126, 2360 |
| TspMI | CCCGGG | 4 cut(s) | 32, 601, 1155, 3299 |
| TspRI | CASTG | 9 cut(s) | 709, 1143, 1195, 1344, 1579, 2272, 2800, 2850, 3150 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| VspI | ATTAAT | 2 cut(s) | 2082, 2889 |
| XapI | RAATTY | 8 cut(s) | 222, 880, 1849, 2230, 2306, 2554, 2595, 3395 |
| XbaI | TCTAGA | 2 cut(s) | 1295, 2252 |
| XceI | RCATGY | 6 cut(s) | 1372, 1452, 1891, 1903, 2094, 2587 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3383 |
| XhoI | CTCGAG | 1 cut(s) | 3427 |
| XmaI | CCCGGG | 4 cut(s) | 32, 601, 1155, 3299 |
| XmiI | GTMKAC | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1866, 2736 |
| ZraI | GACGTC | 1 cut(s) | 730 |
| Zsp2I | ATGCAT | 1 cut(s) | 2096 |