zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 19 - 83 | 7.4e-09 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 456 |
| AciI | CCGC | 1 cut(s) | 56 |
| AclWI | GGATC | 2 cut(s) | 100, 450 |
| AcuI | CTGAAG | 2 cut(s) | 320, 369 |
| AfaI | GTAC | 1 cut(s) | 192 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 505, 506 |
| AgsI | TTSAA | 1 cut(s) | 460 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 358 |
| AjnI | CCWGG | 2 cut(s) | 88, 524 |
| AluBI | AGCT | 3 cut(s) | 237, 253, 269 |
| AluI | AGCT | 3 cut(s) | 237, 253, 269 |
| Alw26I | GTCTC | 1 cut(s) | 366 |
| AlwI | GGATC | 2 cut(s) | 100, 450 |
| AspLEI | GCGC | 1 cut(s) | 55 |
| AspS9I | GGNCC | 1 cut(s) | 522 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AvaII | GGWCC | 1 cut(s) | 522 |
| BauI | CACGAG | 1 cut(s) | 355 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| BccI | CCATC | 1 cut(s) | 413 |
| BceAI | ACGGC | 1 cut(s) | 478 |
| BciT130I | CCWGG | 2 cut(s) | 90, 526 |
| BcoDI | GTCTC | 1 cut(s) | 366 |
| BfaI | CTAG | 1 cut(s) | 5 |
| BfoI | RGCGCY | 1 cut(s) | 56 |
| BfuAI | ACCTGC | 1 cut(s) | 456 |
| BisI | GCNGC | 1 cut(s) | 56 |
| BlsI | GCNGC | 1 cut(s) | 57 |
| Bme1390I | CCNGG | 2 cut(s) | 90, 526 |
| Bme18I | GGWCC | 1 cut(s) | 522 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 358 |
| BmgT120I | GGNCC | 1 cut(s) | 522 |
| BmiI | GGNNCC | 1 cut(s) | 523 |
| BmrFI | CCNGG | 2 cut(s) | 90, 526 |
| BmsI | GCATC | 2 cut(s) | 75, 117 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| Bpu10I | CCTNAGC | 1 cut(s) | 254 |
| BsaI | GGTCTC | 1 cut(s) | 366 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 212, 242 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 505, 506 |
| Bse1I | ACTGG | 3 cut(s) | 137, 159, 177 |
| BseBI | CCWGG | 2 cut(s) | 90, 526 |
| BseGI | GGATG | 1 cut(s) | 424 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 505, 506 |
| BseMII | CTCAG | 1 cut(s) | 268 |
| BseNI | ACTGG | 3 cut(s) | 137, 159, 177 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 505, 506 |
| BsmAI | GTCTC | 1 cut(s) | 366 |
| Bso31I | GGTCTC | 1 cut(s) | 366 |
| Bsp143I | GATC | 2 cut(s) | 92, 442 |
| BspACI | CCGC | 1 cut(s) | 56 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BspHI | TCATGA | 1 cut(s) | 487 |
| BspLI | GGNNCC | 1 cut(s) | 523 |
| BspMI | ACCTGC | 1 cut(s) | 456 |
| BspPI | GGATC | 2 cut(s) | 100, 450 |
| BspQI | GCTCTTC | 1 cut(s) | 59 |
| BspTNI | GGTCTC | 1 cut(s) | 366 |
| BsrI | ACTGG | 3 cut(s) | 137, 159, 177 |
| BssMI | GATC | 2 cut(s) | 92, 442 |
| BssSI | CACGAG | 1 cut(s) | 355 |
| Bst2BI | CACGAG | 1 cut(s) | 355 |
| Bst2UI | CCWGG | 2 cut(s) | 90, 526 |
| Bst4CI | ACNGT | 1 cut(s) | 436 |
| Bst6I | CTCTTC | 2 cut(s) | 59, 348 |
| BstDEI | CTNAG | 2 cut(s) | 81, 254 |
| BstF5I | GGATG | 1 cut(s) | 424 |
| BstH2I | RGCGCY | 1 cut(s) | 56 |
| BstHHI | GCGC | 1 cut(s) | 55 |
| BstKTI | GATC | 2 cut(s) | 95, 445 |
| BstMAI | GTCTC | 1 cut(s) | 366 |
| BstMBI | GATC | 2 cut(s) | 92, 442 |
| BstNI | CCWGG | 2 cut(s) | 90, 526 |
| BstSCI | CCNGG | 2 cut(s) | 88, 524 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 1 cut(s) | 442 |
| BstYI | RGATCY | 1 cut(s) | 442 |
| BtsCI | GGATG | 1 cut(s) | 424 |
| BtsIMutI | CAGTG | 2 cut(s) | 170, 441 |
| BveI | ACCTGC | 1 cut(s) | 456 |
| CciI | TCATGA | 1 cut(s) | 487 |
| CfoI | GCGC | 1 cut(s) | 55 |
| Cfr13I | GGNCC | 1 cut(s) | 522 |
| Csp6I | GTAC | 1 cut(s) | 191 |
| CviAII | CATG | 3 cut(s) | 20, 298, 488 |
| CviJI | RGCY | 5 cut(s) | 69, 237, 253, 269, 497 |
| CviKI_1 | RGCY | 5 cut(s) | 69, 237, 253, 269, 497 |
| CviQI | GTAC | 1 cut(s) | 191 |
| DdeI | CTNAG | 2 cut(s) | 81, 254 |
| DpnI | GATC | 2 cut(s) | 94, 444 |
| DpnII | GATC | 2 cut(s) | 92, 442 |
| DriI | GACNNNNNGTC | 1 cut(s) | 358 |
| Eam1104I | CTCTTC | 2 cut(s) | 59, 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 358 |
| EarI | CTCTTC | 2 cut(s) | 59, 348 |
| Eco31I | GGTCTC | 1 cut(s) | 366 |
| Eco47I | GGWCC | 1 cut(s) | 522 |
| Eco57I | CTGAAG | 2 cut(s) | 320, 369 |
| EcoRII | CCWGG | 2 cut(s) | 88, 524 |
| EcoT22I | ATGCAT | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 23, 301, 491 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 226, 258 |
| FatI | CATG | 3 cut(s) | 19, 297, 487 |
| Fnu4HI | GCNGC | 1 cut(s) | 56 |
| FokI | GGATG | 1 cut(s) | 431 |
| Fsp4HI | GCNGC | 1 cut(s) | 56 |
| FspBI | CTAG | 1 cut(s) | 5 |
| GlaI | GCGC | 1 cut(s) | 54 |
| GluI | GCNGC | 1 cut(s) | 56 |
| HaeII | RGCGCY | 1 cut(s) | 56 |
| HhaI | GCGC | 1 cut(s) | 55 |
| Hin1II | CATG | 3 cut(s) | 23, 301, 491 |
| Hin6I | GCGC | 1 cut(s) | 53 |
| HinP1I | GCGC | 1 cut(s) | 53 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 4 cut(s) | 15, 118, 340, 353 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 1 cut(s) | 339 |
| Hpy188III | TCNNGA | 4 cut(s) | 112, 256, 347, 488 |
| Hpy8I | GTNNAC | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 94, 344, 388 |
| HpyCH4III | ACNGT | 1 cut(s) | 436 |
| HpyCH4IV | ACGT | 1 cut(s) | 400 |
| HpyCH4V | TGCA | 1 cut(s) | 108 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 254 |
| HpySE526I | ACGT | 1 cut(s) | 400 |
| Hsp92II | CATG | 3 cut(s) | 23, 301, 491 |
| HspAI | GCGC | 1 cut(s) | 53 |
| Kzo9I | GATC | 2 cut(s) | 92, 442 |
| LguI | GCTCTTC | 1 cut(s) | 59 |
| LmnI | GCTCC | 2 cut(s) | 31, 220 |
| LweI | GCATC | 2 cut(s) | 75, 117 |
| MaeI | CTAG | 1 cut(s) | 5 |
| MaeII | ACGT | 1 cut(s) | 400 |
| MaeIII | GTNAC | 1 cut(s) | 473 |
| MalI | GATC | 2 cut(s) | 94, 444 |
| MboI | GATC | 2 cut(s) | 92, 442 |
| MboII | GAAGA | 4 cut(s) | 76, 127, 335, 362 |
| MfeI | CAATTG | 1 cut(s) | 503 |
| MflI | RGATCY | 1 cut(s) | 442 |
| MluCI | AATT | 2 cut(s) | 184, 503 |
| MlyI | GAGTC | 2 cut(s) | 334, 347 |
| MnlI | CCTC | 4 cut(s) | 34, 280, 507, 511 |
| Mph1103I | ATGCAT | 1 cut(s) | 110 |
| MseI | TTAA | 1 cut(s) | 141 |
| MslI | CAYNNNNRTG | 1 cut(s) | 486 |
| MspR9I | CCNGG | 2 cut(s) | 90, 526 |
| MunI | CAATTG | 1 cut(s) | 503 |
| MvaI | CCWGG | 2 cut(s) | 90, 526 |
| NdeII | GATC | 2 cut(s) | 92, 442 |
| NlaIII | CATG | 3 cut(s) | 23, 301, 491 |
| NlaIV | GGNNCC | 1 cut(s) | 523 |
| NmuCI | GTSAC | 1 cut(s) | 473 |
| NsiI | ATGCAT | 1 cut(s) | 110 |
| PagI | TCATGA | 1 cut(s) | 487 |
| PciSI | GCTCTTC | 1 cut(s) | 59 |
| PfeI | GAWTC | 2 cut(s) | 15, 118 |
| PkrI | GCNGC | 1 cut(s) | 57 |
| PleI | GAGTC | 2 cut(s) | 334, 347 |
| PpsI | GAGTC | 2 cut(s) | 334, 347 |
| Psp6I | CCWGG | 2 cut(s) | 88, 524 |
| PspGI | CCWGG | 2 cut(s) | 88, 524 |
| PspN4I | GGNNCC | 1 cut(s) | 523 |
| PspPI | GGNCC | 1 cut(s) | 522 |
| PsuI | RGATCY | 1 cut(s) | 442 |
| RsaI | GTAC | 1 cut(s) | 192 |
| RsaNI | GTAC | 1 cut(s) | 191 |
| RseI | CAYNNNNRTG | 1 cut(s) | 486 |
| SapI | GCTCTTC | 1 cut(s) | 59 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 1 cut(s) | 56 |
| Sau3AI | GATC | 2 cut(s) | 92, 442 |
| Sau96I | GGNCC | 1 cut(s) | 522 |
| SchI | GAGTC | 2 cut(s) | 334, 347 |
| ScrFI | CCNGG | 2 cut(s) | 90, 526 |
| SetI | ASST | 7 cut(s) | 28, 105, 239, 255, 271, 403, 470 |
| SfaNI | GCATC | 2 cut(s) | 75, 117 |
| SinI | GGWCC | 1 cut(s) | 522 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 486 |
| Sse9I | AATT | 2 cut(s) | 184, 503 |
| SsiI | CCGC | 1 cut(s) | 56 |
| SspI | AATATT | 1 cut(s) | 130 |
| SspMI | CTAG | 1 cut(s) | 5 |
| StyD4I | CCNGG | 2 cut(s) | 88, 524 |
| TaaI | ACNGT | 1 cut(s) | 436 |
| TaiI | ACGT | 1 cut(s) | 403 |
| TaqI | TCGA | 1 cut(s) | 431 |
| TasI | AATT | 2 cut(s) | 184, 503 |
| TatI | WGTACW | 1 cut(s) | 190 |
| TauI | GCSGC | 1 cut(s) | 58 |
| TfiI | GAWTC | 2 cut(s) | 15, 118 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TscAI | CASTG | 2 cut(s) | 177, 441 |
| TseFI | GTSAC | 1 cut(s) | 473 |
| Tsp45I | GTSAC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 2 cut(s) | 36, 476 |
| TspRI | CASTG | 2 cut(s) | 177, 441 |
| VpaK11BI | GGWCC | 1 cut(s) | 522 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 57 |
| XspI | CTAG | 1 cut(s) | 5 |
| Zsp2I | ATGCAT | 1 cut(s) | 110 |