Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 54 |
| AcoI | YGGCCR | 2 cut(s) | 231, 261 |
| AcsI | RAATTY | 1 cut(s) | 382 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 216 |
| AgsI | TTSAA | 1 cut(s) | 242 |
| AhlI | ACTAGT | 1 cut(s) | 82 |
| AjnI | CCWGG | 1 cut(s) | 324 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 180, 212 |
| AluBI | AGCT | 3 cut(s) | 102, 335, 341 |
| AluI | AGCT | 3 cut(s) | 102, 335, 341 |
| Alw26I | GTCTC | 2 cut(s) | 50, 306 |
| AlwI | GGATC | 1 cut(s) | 54 |
| AoxI | GGCC | 2 cut(s) | 231, 261 |
| ApeKI | GCWGC | 1 cut(s) | 332 |
| ApoI | RAATTY | 1 cut(s) | 382 |
| BalI | TGGCCA | 2 cut(s) | 233, 263 |
| BbsI | GAAGAC | 1 cut(s) | 358 |
| BbvI | GCAGC | 1 cut(s) | 344 |
| BciT130I | CCWGG | 1 cut(s) | 326 |
| BcoDI | GTCTC | 2 cut(s) | 50, 306 |
| BcuI | ACTAGT | 1 cut(s) | 82 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BisI | GCNGC | 1 cut(s) | 333 |
| BlsI | GCNGC | 1 cut(s) | 334 |
| Bme1390I | CCNGG | 1 cut(s) | 326 |
| BmrFI | CCNGG | 1 cut(s) | 326 |
| BpiI | GAAGAC | 1 cut(s) | 358 |
| BpuEI | CTTGAG | 1 cut(s) | 321 |
| BsaI | GGTCTC | 1 cut(s) | 50 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 216 |
| Bse1I | ACTGG | 1 cut(s) | 370 |
| BseBI | CCWGG | 1 cut(s) | 326 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 216 |
| BseNI | ACTGG | 1 cut(s) | 370 |
| BseXI | GCAGC | 1 cut(s) | 344 |
| BshFI | GGCC | 2 cut(s) | 233, 263 |
| BsiSI | CCGG | 1 cut(s) | 128 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 216 |
| BsmAI | GTCTC | 2 cut(s) | 50, 306 |
| BsnI | GGCC | 2 cut(s) | 233, 263 |
| Bso31I | GGTCTC | 1 cut(s) | 50 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| BspANI | GGCC | 2 cut(s) | 233, 263 |
| BspHI | TCATGA | 1 cut(s) | 34 |
| BspPI | GGATC | 1 cut(s) | 54 |
| BspTNI | GGTCTC | 1 cut(s) | 50 |
| BsrI | ACTGG | 1 cut(s) | 370 |
| BssMI | GATC | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 326 |
| BstDEI | CTNAG | 1 cut(s) | 296 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 2 cut(s) | 50, 306 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 338 |
| BstNI | CCWGG | 1 cut(s) | 326 |
| BstNSI | RCATGY | 2 cut(s) | 17, 319 |
| BstSCI | CCNGG | 1 cut(s) | 324 |
| BstV1I | GCAGC | 1 cut(s) | 344 |
| BstV2I | GAAGAC | 1 cut(s) | 358 |
| BstX2I | RGATCY | 1 cut(s) | 46 |
| BstYI | RGATCY | 1 cut(s) | 46 |
| BsuRI | GGCC | 2 cut(s) | 233, 263 |
| CciI | TCATGA | 1 cut(s) | 34 |
| CseI | GACGC | 1 cut(s) | 352 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 195, 230 |
| CviAII | CATG | 4 cut(s) | 14, 35, 185, 316 |
| CviJI | RGCY | 5 cut(s) | 102, 233, 263, 335, 341 |
| CviKI_1 | RGCY | 5 cut(s) | 102, 233, 263, 335, 341 |
| DdeI | CTNAG | 1 cut(s) | 296 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 2 cut(s) | 231, 261 |
| Eco31I | GGTCTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 324 |
| FaeI | CATG | 4 cut(s) | 17, 38, 188, 319 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 242, 274 |
| FatI | CATG | 4 cut(s) | 13, 34, 184, 315 |
| Fnu4HI | GCNGC | 1 cut(s) | 333 |
| Fsp4HI | GCNGC | 1 cut(s) | 333 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GluI | GCNGC | 1 cut(s) | 333 |
| HaeIII | GGCC | 2 cut(s) | 233, 263 |
| HapII | CCGG | 1 cut(s) | 128 |
| HgaI | GACGC | 1 cut(s) | 352 |
| Hin1II | CATG | 4 cut(s) | 17, 38, 188, 319 |
| HincII | GTYRAC | 2 cut(s) | 80, 88 |
| HindII | GTYRAC | 2 cut(s) | 80, 88 |
| HinfI | GANTC | 1 cut(s) | 179 |
| HpaI | GTTAAC | 1 cut(s) | 88 |
| HpaII | CCGG | 1 cut(s) | 128 |
| Hpy166II | GTNNAC | 2 cut(s) | 80, 88 |
| Hpy188III | TCNNGA | 1 cut(s) | 35 |
| Hpy8I | GTNNAC | 2 cut(s) | 80, 88 |
| HpyAV | CCTTC | 1 cut(s) | 262 |
| HpyCH4IV | ACGT | 1 cut(s) | 123 |
| HpyCH4V | TGCA | 2 cut(s) | 11, 332 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 338 |
| HpyF3I | CTNAG | 1 cut(s) | 296 |
| HpySE526I | ACGT | 1 cut(s) | 123 |
| Hsp92II | CATG | 4 cut(s) | 17, 38, 188, 319 |
| KspAI | GTTAAC | 1 cut(s) | 88 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| LpnPI | CCDG | 6 cut(s) | 29, 141, 291, 311, 338, 383 |
| Lsp1109I | GCAGC | 1 cut(s) | 344 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 1 cut(s) | 123 |
| MaeIII | GTNAC | 1 cut(s) | 39 |
| MalI | GATC | 1 cut(s) | 48 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 2 cut(s) | 235, 358 |
| MflI | RGATCY | 1 cut(s) | 46 |
| MlsI | TGGCCA | 2 cut(s) | 233, 263 |
| MluCI | AATT | 3 cut(s) | 190, 290, 382 |
| MluNI | TGGCCA | 2 cut(s) | 233, 263 |
| MnlI | CCTC | 2 cut(s) | 163, 213 |
| Mox20I | TGGCCA | 2 cut(s) | 233, 263 |
| MscI | TGGCCA | 2 cut(s) | 233, 263 |
| MseI | TTAA | 4 cut(s) | 87, 158, 374, 388 |
| Msp20I | TGGCCA | 2 cut(s) | 233, 263 |
| MspI | CCGG | 1 cut(s) | 128 |
| MspR9I | CCNGG | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 326 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 338 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIII | CATG | 4 cut(s) | 17, 38, 188, 319 |
| NspI | RCATGY | 2 cut(s) | 17, 319 |
| PagI | TCATGA | 1 cut(s) | 34 |
| PfeI | GAWTC | 1 cut(s) | 179 |
| PkrI | GCNGC | 1 cut(s) | 334 |
| Psp6I | CCWGG | 1 cut(s) | 324 |
| PspGI | CCWGG | 1 cut(s) | 324 |
| PsuI | RGATCY | 1 cut(s) | 46 |
| SaqAI | TTAA | 4 cut(s) | 87, 158, 374, 388 |
| SatI | GCNGC | 1 cut(s) | 333 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| ScrFI | CCNGG | 1 cut(s) | 326 |
| SmlI | CTYRAG | 1 cut(s) | 336 |
| SmoI | CTYRAG | 1 cut(s) | 336 |
| SpeI | ACTAGT | 1 cut(s) | 82 |
| Sse9I | AATT | 3 cut(s) | 190, 290, 382 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyD4I | CCNGG | 1 cut(s) | 324 |
| TaiI | ACGT | 1 cut(s) | 126 |
| TasI | AATT | 3 cut(s) | 190, 290, 382 |
| TfiI | GAWTC | 1 cut(s) | 179 |
| Tru1I | TTAA | 4 cut(s) | 87, 158, 374, 388 |
| Tru9I | TTAA | 4 cut(s) | 87, 158, 374, 388 |
| TseI | GCWGC | 1 cut(s) | 332 |
| TspDTI | ATGAA | 4 cut(s) | 9, 152, 159, 201 |
| XapI | RAATTY | 1 cut(s) | 382 |
| XceI | RCATGY | 2 cut(s) | 17, 319 |
| XspI | CTAG | 1 cut(s) | 83 |