Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1202 |
| Acc36I | ACCTGC | 1 cut(s) | 1202 |
| Acc65I | GGTACC | 1 cut(s) | 430 |
| AccB1I | GGYRCC | 1 cut(s) | 430 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 714 |
| AccII | CGCG | 4 cut(s) | 1111, 1360, 1407, 1426 |
| AciI | CCGC | 4 cut(s) | 1070, 1178, 1324, 1358 |
| AclWI | GGATC | 2 cut(s) | 1456, 1494 |
| AcoI | YGGCCR | 1 cut(s) | 86 |
| AcsI | RAATTY | 2 cut(s) | 29, 344 |
| AcuI | CTGAAG | 7 cut(s) | 732, 912, 1200, 1252, 1451, 1472, 1489 |
| AcyI | GRCGYC | 2 cut(s) | 1121, 1327 |
| AfaI | GTAC | 3 cut(s) | 384, 432, 451 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 714, 1257, 1288 |
| AflIII | ACRYGT | 3 cut(s) | 452, 463, 1568 |
| AgsI | TTSAA | 4 cut(s) | 139, 680, 848, 1528 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1110 |
| AjiI | CACGTC | 1 cut(s) | 1288 |
| AjnI | CCWGG | 1 cut(s) | 992 |
| AluBI | AGCT | 8 cut(s) | 211, 257, 329, 524, 584, 713, 752, 820 |
| AluI | AGCT | 8 cut(s) | 211, 257, 329, 524, 584, 713, 752, 820 |
| Alw21I | GWGCWC | 2 cut(s) | 526, 958 |
| Alw26I | GTCTC | 7 cut(s) | 600, 948, 1112, 1225, 1373, 1476, 1514 |
| AlwI | GGATC | 2 cut(s) | 1456, 1494 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 755, 1245 |
| Ama87I | CYCGRG | 2 cut(s) | 876, 1115 |
| AoxI | GGCC | 8 cut(s) | 45, 86, 197, 834, 879, 1229, 1279, 1476 |
| ApeKI | GCWGC | 4 cut(s) | 118, 177, 1129, 1245 |
| ApoI | RAATTY | 2 cut(s) | 29, 344 |
| Asp718I | GGTACC | 1 cut(s) | 430 |
| AspLEI | GCGC | 3 cut(s) | 1362, 1409, 1428 |
| AspS9I | GGNCC | 7 cut(s) | 314, 834, 879, 1015, 1041, 1230, 1280 |
| AsuC2I | CCSGG | 1 cut(s) | 1039 |
| AsuHPI | GGTGA | 3 cut(s) | 1183, 1322, 1370 |
| AvaI | CYCGRG | 2 cut(s) | 876, 1115 |
| AvaII | GGWCC | 3 cut(s) | 314, 1015, 1041 |
| BalI | TGGCCA | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 430 |
| BanII | GRGCYC | 1 cut(s) | 526 |
| BbsI | GAAGAC | 2 cut(s) | 990, 1444 |
| Bbv12I | GWGCWC | 2 cut(s) | 526, 958 |
| BbvI | GCAGC | 4 cut(s) | 130, 189, 1116, 1232 |
| BccI | CCATC | 4 cut(s) | 29, 78, 800, 824 |
| BceAI | ACGGC | 3 cut(s) | 165, 1057, 1108 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 722, 756, 857, 891 |
| BciT130I | CCWGG | 1 cut(s) | 994 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcnI | CCSGG | 1 cut(s) | 1039 |
| BcoDI | GTCTC | 7 cut(s) | 600, 948, 1112, 1225, 1373, 1476, 1514 |
| BfaI | CTAG | 9 cut(s) | 507, 575, 780, 800, 1098, 1317, 1334, 1394, 1448 |
| BfmI | CTRYAG | 1 cut(s) | 436 |
| BfuAI | ACCTGC | 1 cut(s) | 1202 |
| BisI | GCNGC | 5 cut(s) | 119, 178, 1130, 1246, 1325 |
| BlsI | GCNGC | 5 cut(s) | 120, 179, 1131, 1247, 1326 |
| Bme1390I | CCNGG | 2 cut(s) | 994, 1039 |
| Bme18I | GGWCC | 3 cut(s) | 314, 1015, 1041 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1110 |
| BmeT110I | CYCGRG | 2 cut(s) | 876, 1115 |
| BmgBI | CACGTC | 1 cut(s) | 1288 |
| BmgT120I | GGNCC | 7 cut(s) | 314, 834, 879, 1015, 1041, 1230, 1280 |
| BmiI | GGNNCC | 6 cut(s) | 9, 432, 647, 835, 1016, 1042 |
| BmrFI | CCNGG | 2 cut(s) | 994, 1039 |
| BmrI | ACTGGG | 1 cut(s) | 1437 |
| BmsI | GCATC | 1 cut(s) | 1437 |
| BmuI | ACTGGG | 1 cut(s) | 1437 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1024, 1072, 1535 |
| BpiI | GAAGAC | 2 cut(s) | 990, 1444 |
| BpmI | CTGGAG | 2 cut(s) | 207, 1234 |
| BpuEI | CTTGAG | 1 cut(s) | 1183 |
| BpuMI | CCSGG | 1 cut(s) | 1039 |
| BsaAI | YACGTR | 1 cut(s) | 453 |
| BsaHI | GRCGYC | 2 cut(s) | 1121, 1327 |
| BsaWI | WCCGGW | 1 cut(s) | 648 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 714, 1257, 1288 |
| Bse1I | ACTGG | 5 cut(s) | 48, 684, 1187, 1251, 1443 |
| Bse3DI | GCAATG | 1 cut(s) | 870 |
| BseBI | CCWGG | 1 cut(s) | 994 |
| BseGI | GGATG | 3 cut(s) | 117, 1054, 1428 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 714, 1257, 1288 |
| BseMI | GCAATG | 1 cut(s) | 870 |
| BseMII | CTCAG | 3 cut(s) | 169, 605, 1386 |
| BseNI | ACTGG | 5 cut(s) | 48, 684, 1187, 1251, 1443 |
| BseRI | GAGGAG | 1 cut(s) | 1072 |
| BseXI | GCAGC | 4 cut(s) | 130, 189, 1116, 1232 |
| BsgI | GTGCAG | 2 cut(s) | 741, 932 |
| Bsh1236I | CGCG | 4 cut(s) | 1111, 1360, 1407, 1426 |
| BshFI | GGCC | 8 cut(s) | 47, 88, 199, 836, 881, 1231, 1281, 1478 |
| BshNI | GGYRCC | 1 cut(s) | 430 |
| BsiHKAI | GWGCWC | 2 cut(s) | 526, 958 |
| BsiHKCI | CYCGRG | 2 cut(s) | 876, 1115 |
| BsiSI | CCGG | 5 cut(s) | 649, 1038, 1206, 1475, 1513 |
| BslFI | GGGAC | 4 cut(s) | 1028, 1098, 1340, 1523 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 714, 1257, 1288 |
| BsmAI | GTCTC | 7 cut(s) | 600, 948, 1112, 1225, 1373, 1476, 1514 |
| BsmBI | CGTCTC | 1 cut(s) | 1112 |
| BsmFI | GGGAC | 4 cut(s) | 1028, 1098, 1340, 1523 |
| BsmI | GAATGC | 1 cut(s) | 902 |
| BsnI | GGCC | 8 cut(s) | 47, 88, 199, 836, 881, 1231, 1281, 1478 |
| BsoBI | CYCGRG | 2 cut(s) | 876, 1115 |
| Bsp1286I | GDGCHC | 2 cut(s) | 526, 958 |
| Bsp143I | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| BspACI | CCGC | 4 cut(s) | 1070, 1178, 1324, 1358 |
| BspANI | GGCC | 8 cut(s) | 47, 88, 199, 836, 881, 1231, 1281, 1478 |
| BspCNI | CTCAG | 3 cut(s) | 168, 604, 1385 |
| BspFNI | CGCG | 4 cut(s) | 1111, 1360, 1407, 1426 |
| BspLI | GGNNCC | 6 cut(s) | 9, 432, 647, 835, 1016, 1042 |
| BspMI | ACCTGC | 1 cut(s) | 1202 |
| BspPI | GGATC | 2 cut(s) | 1456, 1494 |
| BspQI | GCTCTTC | 1 cut(s) | 751 |
| BspT107I | GGYRCC | 1 cut(s) | 430 |
| BsrDI | GCAATG | 1 cut(s) | 870 |
| BsrI | ACTGG | 5 cut(s) | 48, 684, 1187, 1251, 1443 |
| BssMI | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| BssNI | GRCGYC | 2 cut(s) | 1121, 1327 |
| Bst2UI | CCWGG | 1 cut(s) | 994 |
| Bst4CI | ACNGT | 4 cut(s) | 440, 771, 1184, 1403 |
| Bst6I | CTCTTC | 3 cut(s) | 171, 751, 1056 |
| BstACI | GRCGYC | 2 cut(s) | 1121, 1327 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1245 |
| BstBAI | YACGTR | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 4 cut(s) | 378, 735, 915, 1411 |
| BstDEI | CTNAG | 6 cut(s) | 155, 173, 350, 475, 591, 1372 |
| BstF5I | GGATG | 3 cut(s) | 117, 1054, 1428 |
| BstFNI | CGCG | 4 cut(s) | 1111, 1360, 1407, 1426 |
| BstHHI | GCGC | 3 cut(s) | 1362, 1409, 1428 |
| BstKTI | GATC | 7 cut(s) | 613, 1103, 1139, 1378, 1464, 1502, 1557 |
| BstMAI | GTCTC | 7 cut(s) | 600, 948, 1112, 1225, 1373, 1476, 1514 |
| BstMBI | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 914, 1129, 1245 |
| BstNI | CCWGG | 1 cut(s) | 994 |
| BstNSI | RCATGY | 2 cut(s) | 467, 1572 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1024, 1072, 1535 |
| BstSCI | CCNGG | 2 cut(s) | 992, 1037 |
| BstSFI | CTRYAG | 1 cut(s) | 436 |
| BstUI | CGCG | 4 cut(s) | 1111, 1360, 1407, 1426 |
| BstV1I | GCAGC | 4 cut(s) | 130, 189, 1116, 1232 |
| BstV2I | GAAGAC | 2 cut(s) | 990, 1444 |
| BsuRI | GGCC | 8 cut(s) | 47, 88, 199, 836, 881, 1231, 1281, 1478 |
| BtrI | CACGTC | 1 cut(s) | 1288 |
| BtsCI | GGATG | 3 cut(s) | 117, 1054, 1428 |
| BtsI | GCAGTG | 1 cut(s) | 915 |
| BtsIMutI | CAGTG | 3 cut(s) | 445, 691, 915 |
| BveI | ACCTGC | 1 cut(s) | 1202 |
| Cac8I | GCNNGC | 4 cut(s) | 378, 735, 915, 1411 |
| CaiI | CAGNNNCTG | 2 cut(s) | 755, 1245 |
| CfoI | GCGC | 3 cut(s) | 1362, 1409, 1428 |
| Cfr13I | GGNCC | 7 cut(s) | 314, 834, 879, 1015, 1041, 1230, 1280 |
| CseI | GACGC | 4 cut(s) | 1100, 1129, 1245, 1316 |
| CsiI | ACCWGGT | 1 cut(s) | 992 |
| Csp6I | GTAC | 3 cut(s) | 383, 431, 450 |
| CviAII | CATG | 8 cut(s) | 131, 145, 447, 464, 674, 719, 764, 1569 |
| CviQI | GTAC | 3 cut(s) | 383, 431, 450 |
| DdeI | CTNAG | 6 cut(s) | 155, 173, 350, 475, 591, 1372 |
| DpnI | GATC | 7 cut(s) | 612, 1102, 1138, 1377, 1463, 1501, 1556 |
| DpnII | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1110 |
| EaeI | YGGCCR | 1 cut(s) | 86 |
| Eam1104I | CTCTTC | 3 cut(s) | 171, 751, 1056 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1110 |
| EarI | CTCTTC | 3 cut(s) | 171, 751, 1056 |
| Ecl136II | GAGCTC | 1 cut(s) | 524 |
| Eco147I | AGGCCT | 1 cut(s) | 199 |
| Eco24I | GRGCYC | 1 cut(s) | 526 |
| Eco47I | GGWCC | 3 cut(s) | 314, 1015, 1041 |
| Eco53kI | GAGCTC | 1 cut(s) | 524 |
| Eco57I | CTGAAG | 7 cut(s) | 732, 912, 1200, 1252, 1451, 1472, 1489 |
| Eco88I | CYCGRG | 2 cut(s) | 876, 1115 |
| EcoICRI | GAGCTC | 1 cut(s) | 524 |
| EcoO109I | RGGNCCY | 1 cut(s) | 834 |
| EcoRII | CCWGG | 1 cut(s) | 992 |
| EcoT22I | ATGCAT | 1 cut(s) | 870 |
| EcoT38I | GRGCYC | 1 cut(s) | 526 |
| Esp3I | CGTCTC | 1 cut(s) | 1112 |
| FaeI | CATG | 8 cut(s) | 134, 148, 450, 467, 677, 722, 767, 1572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1527, 1559 |
| FaqI | GGGAC | 4 cut(s) | 1028, 1098, 1340, 1523 |
| FatI | CATG | 8 cut(s) | 130, 144, 446, 463, 673, 718, 763, 1568 |
| FauI | CCCGC | 1 cut(s) | 1365 |
| FauNDI | CATATG | 1 cut(s) | 310 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 5 cut(s) | 119, 178, 1130, 1246, 1325 |
| FokI | GGATG | 3 cut(s) | 124, 1041, 1415 |
| FriOI | GRGCYC | 1 cut(s) | 526 |
| Fsp4HI | GCNGC | 5 cut(s) | 119, 178, 1130, 1246, 1325 |
| FspBI | CTAG | 9 cut(s) | 507, 575, 780, 800, 1098, 1317, 1334, 1394, 1448 |
| GlaI | GCGC | 3 cut(s) | 1361, 1408, 1427 |
| GluI | GCNGC | 5 cut(s) | 119, 178, 1130, 1246, 1325 |
| GsuI | CTGGAG | 2 cut(s) | 207, 1234 |
| HaeIII | GGCC | 8 cut(s) | 47, 88, 199, 836, 881, 1231, 1281, 1478 |
| HapII | CCGG | 5 cut(s) | 649, 1038, 1206, 1475, 1513 |
| HgaI | GACGC | 4 cut(s) | 1100, 1129, 1245, 1316 |
| HhaI | GCGC | 3 cut(s) | 1362, 1409, 1428 |
| Hin1I | GRCGYC | 2 cut(s) | 1121, 1327 |
| Hin1II | CATG | 8 cut(s) | 134, 148, 450, 467, 677, 722, 767, 1572 |
| Hin6I | GCGC | 3 cut(s) | 1360, 1407, 1426 |
| HinP1I | GCGC | 3 cut(s) | 1360, 1407, 1426 |
| HincII | GTYRAC | 2 cut(s) | 1574, 1591 |
| HindII | GTYRAC | 2 cut(s) | 1574, 1591 |
| HindIII | AAGCTT | 3 cut(s) | 209, 327, 711 |
| HinfI | GANTC | 3 cut(s) | 97, 443, 976 |
| HpaII | CCGG | 5 cut(s) | 649, 1038, 1206, 1475, 1513 |
| HphI | GGTGA | 3 cut(s) | 1183, 1322, 1370 |
| Hpy166II | GTNNAC | 4 cut(s) | 66, 1044, 1574, 1591 |
| Hpy188I | TCNGA | 5 cut(s) | 960, 975, 1375, 1433, 1495 |
| Hpy188III | TCNNGA | 5 cut(s) | 186, 800, 1065, 1115, 1528 |
| Hpy8I | GTNNAC | 4 cut(s) | 66, 1044, 1574, 1591 |
| Hpy99I | CGWCG | 3 cut(s) | 1078, 1129, 1391 |
| HpyAV | CCTTC | 7 cut(s) | 22, 210, 537, 847, 1475, 1496, 1513 |
| HpyCH4III | ACNGT | 4 cut(s) | 440, 771, 1184, 1403 |
| HpyCH4IV | ACGT | 3 cut(s) | 452, 1287, 1312 |
| HpyCH4V | TGCA | 9 cut(s) | 118, 498, 733, 758, 868, 908, 913, 935, 1582 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 914, 1129, 1245 |
| HpyF3I | CTNAG | 6 cut(s) | 155, 173, 350, 475, 591, 1372 |
| HpySE526I | ACGT | 3 cut(s) | 452, 1287, 1312 |
| Hsp92I | GRCGYC | 2 cut(s) | 1121, 1327 |
| Hsp92II | CATG | 8 cut(s) | 134, 148, 450, 467, 677, 722, 767, 1572 |
| HspAI | GCGC | 3 cut(s) | 1360, 1407, 1426 |
| KpnI | GGTACC | 1 cut(s) | 434 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| Kzo9I | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| LguI | GCTCTTC | 1 cut(s) | 751 |
| LmnI | GCTCC | 4 cut(s) | 399, 521, 529, 1253 |
| Lsp1109I | GCAGC | 4 cut(s) | 130, 189, 1116, 1232 |
| LweI | GCATC | 1 cut(s) | 1437 |
| MabI | ACCWGGT | 1 cut(s) | 992 |
| MaeI | CTAG | 9 cut(s) | 507, 575, 780, 800, 1098, 1317, 1334, 1394, 1448 |
| MaeII | ACGT | 3 cut(s) | 452, 1287, 1312 |
| MaeIII | GTNAC | 5 cut(s) | 793, 988, 1189, 1291, 1328 |
| MalI | GATC | 7 cut(s) | 612, 1102, 1138, 1377, 1463, 1501, 1556 |
| MboI | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| MhlI | GDGCHC | 2 cut(s) | 526, 958 |
| MlsI | TGGCCA | 1 cut(s) | 88 |
| MluCI | AATT | 5 cut(s) | 29, 90, 344, 848, 922 |
| MluNI | TGGCCA | 1 cut(s) | 88 |
| MlyI | GAGTC | 2 cut(s) | 91, 452 |
| MmeI | TCCRAC | 1 cut(s) | 1445 |
| Mox20I | TGGCCA | 1 cut(s) | 88 |
| Mph1103I | ATGCAT | 1 cut(s) | 870 |
| MscI | TGGCCA | 1 cut(s) | 88 |
| MseI | TTAA | 2 cut(s) | 237, 815 |
| MslI | CAYNNNNRTG | 1 cut(s) | 451 |
| Msp20I | TGGCCA | 1 cut(s) | 88 |
| MspI | CCGG | 5 cut(s) | 649, 1038, 1206, 1475, 1513 |
| MspR9I | CCNGG | 2 cut(s) | 994, 1039 |
| Mva1269I | GAATGC | 1 cut(s) | 902 |
| MvaI | CCWGG | 1 cut(s) | 994 |
| MvnI | CGCG | 4 cut(s) | 1111, 1360, 1407, 1426 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 914, 1129, 1245 |
| NciI | CCSGG | 1 cut(s) | 1039 |
| NdeI | CATATG | 1 cut(s) | 310 |
| NdeII | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| NlaIII | CATG | 8 cut(s) | 134, 148, 450, 467, 677, 722, 767, 1572 |
| NlaIV | GGNNCC | 6 cut(s) | 9, 432, 647, 835, 1016, 1042 |
| NmuCI | GTSAC | 4 cut(s) | 793, 1189, 1291, 1328 |
| NsiI | ATGCAT | 1 cut(s) | 870 |
| NspI | RCATGY | 2 cut(s) | 467, 1572 |
| PaqCI | CACCTGC | 1 cut(s) | 1202 |
| PceI | AGGCCT | 1 cut(s) | 199 |
| PciI | ACATGT | 2 cut(s) | 463, 1568 |
| PciSI | GCTCTTC | 1 cut(s) | 751 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1345 |
| PctI | GAATGC | 1 cut(s) | 902 |
| PfeI | GAWTC | 1 cut(s) | 976 |
| PflFI | GACNNNGTC | 4 cut(s) | 1123, 1239, 1289, 1443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 714 |
| PkrI | GCNGC | 5 cut(s) | 120, 179, 1131, 1247, 1326 |
| PleI | GAGTC | 2 cut(s) | 91, 451 |
| PpsI | GAGTC | 2 cut(s) | 91, 451 |
| Ppu21I | YACGTR | 1 cut(s) | 453 |
| PscI | ACATGT | 2 cut(s) | 463, 1568 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1024, 1072, 1535 |
| Psp124BI | GAGCTC | 1 cut(s) | 526 |
| Psp6I | CCWGG | 1 cut(s) | 992 |
| PspGI | CCWGG | 1 cut(s) | 992 |
| PspN4I | GGNNCC | 6 cut(s) | 9, 432, 647, 835, 1016, 1042 |
| PspPI | GGNCC | 7 cut(s) | 314, 834, 879, 1015, 1041, 1230, 1280 |
| PstNI | CAGNNNCTG | 2 cut(s) | 755, 1245 |
| PsyI | GACNNNGTC | 4 cut(s) | 1123, 1239, 1289, 1443 |
| RsaI | GTAC | 3 cut(s) | 384, 432, 451 |
| RsaNI | GTAC | 3 cut(s) | 383, 431, 450 |
| RseI | CAYNNNNRTG | 1 cut(s) | 451 |
| SacI | GAGCTC | 1 cut(s) | 526 |
| SapI | GCTCTTC | 1 cut(s) | 751 |
| SaqAI | TTAA | 2 cut(s) | 237, 815 |
| SatI | GCNGC | 5 cut(s) | 119, 178, 1130, 1246, 1325 |
| Sau3AI | GATC | 7 cut(s) | 610, 1100, 1136, 1375, 1461, 1499, 1554 |
| Sau96I | GGNCC | 7 cut(s) | 314, 834, 879, 1015, 1041, 1230, 1280 |
| SchI | GAGTC | 2 cut(s) | 91, 452 |
| ScrFI | CCNGG | 2 cut(s) | 994, 1039 |
| SduI | GDGCHC | 2 cut(s) | 526, 958 |
| SexAI | ACCWGGT | 1 cut(s) | 992 |
| SfaNI | GCATC | 1 cut(s) | 1437 |
| SfcI | CTRYAG | 1 cut(s) | 436 |
| SinI | GGWCC | 3 cut(s) | 314, 1015, 1041 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 451 |
| SmlI | CTYRAG | 1 cut(s) | 1198 |
| SmoI | CTYRAG | 1 cut(s) | 1198 |
| Sse9I | AATT | 5 cut(s) | 29, 90, 344, 848, 922 |
| SseBI | AGGCCT | 1 cut(s) | 199 |
| SsiI | CCGC | 4 cut(s) | 1070, 1178, 1324, 1358 |
| SspMI | CTAG | 9 cut(s) | 507, 575, 780, 800, 1098, 1317, 1334, 1394, 1448 |
| SstI | GAGCTC | 1 cut(s) | 526 |
| StuI | AGGCCT | 1 cut(s) | 199 |
| StyD4I | CCNGG | 2 cut(s) | 992, 1037 |
| TaaI | ACNGT | 4 cut(s) | 440, 771, 1184, 1403 |
| TaiI | ACGT | 3 cut(s) | 455, 1290, 1315 |
| TaqI | TCGA | 4 cut(s) | 773, 1103, 1139, 1460 |
| TaqII | GACCGA | 3 cut(s) | 1032, 1512, 1547 |
| TasI | AATT | 5 cut(s) | 29, 90, 344, 848, 922 |
| TatI | WGTACW | 1 cut(s) | 382 |
| TauI | GCSGC | 1 cut(s) | 1327 |
| TfiI | GAWTC | 1 cut(s) | 976 |
| Tru1I | TTAA | 2 cut(s) | 237, 815 |
| Tru9I | TTAA | 2 cut(s) | 237, 815 |
| TscAI | CASTG | 3 cut(s) | 445, 691, 915 |
| TseFI | GTSAC | 4 cut(s) | 793, 1189, 1291, 1328 |
| TseI | GCWGC | 4 cut(s) | 118, 177, 1129, 1245 |
| Tsp45I | GTSAC | 4 cut(s) | 793, 1189, 1291, 1328 |
| TspDTI | ATGAA | 6 cut(s) | 115, 119, 519, 990, 1043, 1291 |
| TspGWI | ACGGA | 1 cut(s) | 1287 |
| TspRI | CASTG | 3 cut(s) | 445, 691, 915 |
| Tth111I | GACNNNGTC | 4 cut(s) | 1123, 1239, 1289, 1443 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 714 |
| VpaK11BI | GGWCC | 3 cut(s) | 314, 1015, 1041 |
| XapI | RAATTY | 2 cut(s) | 29, 344 |
| XbaI | TCTAGA | 1 cut(s) | 799 |
| XceI | RCATGY | 2 cut(s) | 467, 1572 |
| XspI | CTAG | 9 cut(s) | 507, 575, 780, 800, 1098, 1317, 1334, 1394, 1448 |
| Zsp2I | ATGCAT | 1 cut(s) | 870 |