Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Fer2 | PF00111 | 36 - 88 | 1.1e-07 | 2Fe-2S iron-sulfur cluster binding domain |
| Fer2_2 | PF01799 | 99 - 173 | 1.9e-32 | [2Fe-2S] binding domain |
| FAD_binding_5 | PF00941 | 268 - 445 | 5.9e-50 | FAD binding domain in molybdopterin dehydrogenase |
| CO_deh_flav_C | PF03450 | 454 - 559 | 1.4e-28 | CO dehydrogenase flavoprotein C-terminal domain |
| Ald_Xan_dh_C | PF01315 | 618 - 725 | 4.4e-28 | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain |
| MoCoBD_1 | PF02738 | 742 - 981 | 2.2e-86 | Molybdopterin cofactor-binding domain |
| MoCoBD_2 | PF20256 | 1009 - 1278 | 1.2e-88 | Molybdopterin cofactor-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3146 |
| Acc36I | ACCTGC | 1 cut(s) | 3146 |
| AccI | GTMKAC | 4 cut(s) | 967, 1942, 3174, 4030 |
| AccII | CGCG | 2 cut(s) | 3403, 4086 |
| AciI | CCGC | 7 cut(s) | 1007, 2490, 2493, 2502, 3002, 3085, 4059 |
| AclWI | GGATC | 6 cut(s) | 1299, 2265, 2691, 2962, 3654, 3743 |
| AcuI | CTGAAG | 6 cut(s) | 242, 998, 1829, 2049, 3878, 3996 |
| AcyI | GRCGYC | 1 cut(s) | 1253 |
| AdeI | CACNNNGTG | 1 cut(s) | 374 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 605, 1198, 1288, 1895, 2596, 3006, 3625 |
| AflII | CTTAAG | 3 cut(s) | 827, 1036, 1706 |
| AflIII | ACRYGT | 2 cut(s) | 949, 3357 |
| AhlI | ACTAGT | 1 cut(s) | 3788 |
| AjnI | CCWGG | 7 cut(s) | 1545, 1609, 1978, 2319, 3150, 3772, 3796 |
| AleI | CACNNNNGTG | 1 cut(s) | 3626 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1404, 1436 |
| Alw21I | GWGCWC | 5 cut(s) | 756, 1567, 2172, 3163, 4076 |
| Alw26I | GTCTC | 8 cut(s) | 146, 817, 1731, 1821, 1834, 2504, 2730, 3293 |
| AlwI | GGATC | 6 cut(s) | 1299, 2265, 2691, 2962, 3654, 3743 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2543, 3344 |
| Ama87I | CYCGRG | 2 cut(s) | 388, 1595 |
| AseI | ATTAAT | 1 cut(s) | 2937 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 791 |
| AspLEI | GCGC | 3 cut(s) | 2622, 3403, 4088 |
| AspS9I | GGNCC | 6 cut(s) | 2033, 2852, 2998, 3220, 3472, 3794 |
| AsuC2I | CCSGG | 4 cut(s) | 34, 389, 390, 3475 |
| AsuHPI | GGTGA | 8 cut(s) | 98, 103, 179, 596, 1316, 1451, 2960, 3917 |
| AsuII | TTCGAA | 2 cut(s) | 1219, 3038 |
| AvaI | CYCGRG | 2 cut(s) | 388, 1595 |
| AvaII | GGWCC | 2 cut(s) | 2033, 2852 |
| AxyI | CCTNAGG | 1 cut(s) | 1821 |
| BaeGI | GKGCMC | 1 cut(s) | 599 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 936, 969 |
| BanII | GRGCYC | 4 cut(s) | 756, 2172, 3912, 4076 |
| BbsI | GAAGAC | 2 cut(s) | 2441, 3280 |
| Bbv12I | GWGCWC | 5 cut(s) | 756, 1567, 2172, 3163, 4076 |
| BbvCI | CCTCAGC | 1 cut(s) | 3585 |
| BceAI | ACGGC | 4 cut(s) | 227, 1327, 1892, 2882 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 675, 709, 1956, 1990 |
| BciT130I | CCWGG | 7 cut(s) | 1547, 1611, 1980, 2321, 3152, 3774, 3798 |
| BciVI | GTATCC | 1 cut(s) | 3647 |
| BcnI | CCSGG | 4 cut(s) | 34, 389, 390, 3475 |
| BcoDI | GTCTC | 8 cut(s) | 146, 817, 1731, 1821, 1834, 2504, 2730, 3293 |
| BcuI | ACTAGT | 1 cut(s) | 3788 |
| BfaI | CTAG | 8 cut(s) | 839, 1338, 2309, 2717, 3194, 3624, 3728, 3789 |
| BfmI | CTRYAG | 2 cut(s) | 2535, 3369 |
| BfoI | RGCGCY | 1 cut(s) | 2623 |
| BfrI | CTTAAG | 3 cut(s) | 827, 1036, 1706 |
| BfuAI | ACCTGC | 1 cut(s) | 3146 |
| BfuI | GTATCC | 1 cut(s) | 3647 |
| BglII | AGATCT | 1 cut(s) | 3481 |
| BlpI | GCTNAGC | 1 cut(s) | 3447 |
| BmcAI | AGTACT | 1 cut(s) | 837 |
| Bme18I | GGWCC | 2 cut(s) | 2033, 2852 |
| BmeT110I | CYCGRG | 2 cut(s) | 388, 1595 |
| BmgT120I | GGNCC | 6 cut(s) | 2033, 2852, 2998, 3220, 3472, 3794 |
| BmiI | GGNNCC | 9 cut(s) | 261, 314, 1544, 2035, 2340, 3000, 3318, 3411, 3778 |
| BmrI | ACTGGG | 3 cut(s) | 1539, 2622, 2817 |
| BmuI | ACTGGG | 3 cut(s) | 1539, 2622, 2817 |
| BpiI | GAAGAC | 2 cut(s) | 2441, 3280 |
| BpmI | CTGGAG | 1 cut(s) | 3630 |
| Bpu10I | CCTNAGC | 3 cut(s) | 750, 3246, 3585 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3447 |
| Bpu14I | TTCGAA | 2 cut(s) | 1219, 3038 |
| BpuEI | CTTGAG | 8 cut(s) | 140, 841, 1013, 1448, 1761, 2388, 2759, 2841 |
| BpuMI | CCSGG | 4 cut(s) | 34, 389, 390, 3475 |
| Bsa29I | ATCGAT | 1 cut(s) | 2186 |
| BsaAI | YACGTR | 1 cut(s) | 289 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2256 |
| BsaHI | GRCGYC | 1 cut(s) | 1253 |
| BsaI | GGTCTC | 2 cut(s) | 146, 1821 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 29, 59, 2091, 2121, 2392, 2422, 3357, 3387 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 605, 1198, 1288, 1895, 2596, 3006, 3625 |
| Bse118I | RCCGGY | 1 cut(s) | 1255 |
| Bse21I | CCTNAGG | 1 cut(s) | 1821 |
| Bse3DI | GCAATG | 4 cut(s) | 1883, 2148, 2383, 2526 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2256 |
| BseBI | CCWGG | 7 cut(s) | 1547, 1611, 1980, 2321, 3152, 3774, 3798 |
| BseCI | ATCGAT | 1 cut(s) | 2186 |
| BseJI | GATNNNNATC | 1 cut(s) | 2256 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 605, 1198, 1288, 1895, 2596, 3006, 3625 |
| BseMI | GCAATG | 4 cut(s) | 1883, 2148, 2383, 2526 |
| BseRI | GAGGAG | 6 cut(s) | 41, 53, 56, 461, 2400, 3222 |
| BseSI | GKGCMC | 1 cut(s) | 599 |
| BseYI | CCCAGC | 3 cut(s) | 1115, 2173, 3667 |
| BsgI | GTGCAG | 3 cut(s) | 218, 314, 1080 |
| Bsh1236I | CGCG | 2 cut(s) | 3403, 4086 |
| BshVI | ATCGAT | 1 cut(s) | 2186 |
| BsiHKAI | GWGCWC | 5 cut(s) | 756, 1567, 2172, 3163, 4076 |
| BsiHKCI | CYCGRG | 2 cut(s) | 388, 1595 |
| BsiSI | CCGG | 4 cut(s) | 33, 389, 1256, 3475 |
| BslFI | GGGAC | 4 cut(s) | 163, 1816, 2811, 3876 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 605, 1198, 1288, 1895, 2596, 3006, 3625 |
| BsmAI | GTCTC | 8 cut(s) | 146, 817, 1731, 1821, 1834, 2504, 2730, 3293 |
| BsmFI | GGGAC | 4 cut(s) | 163, 1816, 2811, 3876 |
| BsmI | GAATGC | 1 cut(s) | 1411 |
| Bso31I | GGTCTC | 2 cut(s) | 146, 1821 |
| BsoBI | CYCGRG | 2 cut(s) | 388, 1595 |
| Bsp119I | TTCGAA | 2 cut(s) | 1219, 3038 |
| Bsp1286I | GDGCHC | 7 cut(s) | 599, 756, 1567, 2172, 3163, 3912, 4076 |
| Bsp1407I | TGTACA | 3 cut(s) | 549, 1160, 2990 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3447 |
| Bsp19I | CCATGG | 1 cut(s) | 3493 |
| BspACI | CCGC | 7 cut(s) | 1007, 2490, 2493, 2502, 3002, 3085, 4059 |
| BspDI | ATCGAT | 1 cut(s) | 2186 |
| BspFNI | CGCG | 2 cut(s) | 3403, 4086 |
| BspHI | TCATGA | 2 cut(s) | 1066, 3144 |
| BspLI | GGNNCC | 9 cut(s) | 261, 314, 1544, 2035, 2340, 3000, 3318, 3411, 3778 |
| BspMAI | CTGCAG | 2 cut(s) | 2539, 3373 |
| BspMI | ACCTGC | 1 cut(s) | 3146 |
| BspPI | GGATC | 6 cut(s) | 1299, 2265, 2691, 2962, 3654, 3743 |
| BspQI | GCTCTTC | 2 cut(s) | 11, 2160 |
| BspT104I | TTCGAA | 2 cut(s) | 1219, 3038 |
| BspTI | CTTAAG | 3 cut(s) | 827, 1036, 1706 |
| BspTNI | GGTCTC | 2 cut(s) | 146, 1821 |
| BsrDI | GCAATG | 4 cut(s) | 1883, 2148, 2383, 2526 |
| BsrFI | RCCGGY | 1 cut(s) | 1255 |
| BsrGI | TGTACA | 3 cut(s) | 549, 1160, 2990 |
| BssAI | RCCGGY | 1 cut(s) | 1255 |
| BssNAI | GTATAC | 3 cut(s) | 968, 1943, 4031 |
| BssNI | GRCGYC | 1 cut(s) | 1253 |
| BssT1I | CCWWGG | 4 cut(s) | 1331, 2004, 3223, 3493 |
| Bst1107I | GTATAC | 3 cut(s) | 968, 1943, 4031 |
| Bst2UI | CCWGG | 7 cut(s) | 1547, 1611, 1980, 2321, 3152, 3774, 3798 |
| Bst6I | CTCTTC | 6 cut(s) | 11, 18, 1529, 2160, 2733, 2916 |
| BstACI | GRCGYC | 1 cut(s) | 1253 |
| BstAFI | CTTAAG | 3 cut(s) | 827, 1036, 1706 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1868, 3344 |
| BstAUI | TGTACA | 3 cut(s) | 549, 1160, 2990 |
| BstBAI | YACGTR | 1 cut(s) | 289 |
| BstBI | TTCGAA | 2 cut(s) | 1219, 3038 |
| BstDSI | CCRYGG | 1 cut(s) | 3493 |
| BstEII | GGTNACC | 1 cut(s) | 1277 |
| BstFNI | CGCG | 2 cut(s) | 3403, 4086 |
| BstH2I | RGCGCY | 1 cut(s) | 2623 |
| BstHHI | GCGC | 3 cut(s) | 2622, 3403, 4088 |
| BstMAI | GTCTC | 8 cut(s) | 146, 817, 1731, 1821, 1834, 2504, 2730, 3293 |
| BstNI | CCWGG | 7 cut(s) | 1547, 1611, 1980, 2321, 3152, 3774, 3798 |
| BstNSI | RCATGY | 6 cut(s) | 255, 953, 1907, 3361, 3387, 3465 |
| BstPI | GGTNACC | 1 cut(s) | 1277 |
| BstSFI | CTRYAG | 2 cut(s) | 2535, 3369 |
| BstSLI | GKGCMC | 1 cut(s) | 599 |
| BstUI | CGCG | 2 cut(s) | 3403, 4086 |
| BstV2I | GAAGAC | 2 cut(s) | 2441, 3280 |
| BstX2I | RGATCY | 6 cut(s) | 1291, 2257, 2683, 3481, 3646, 3748 |
| BstYI | RGATCY | 6 cut(s) | 1291, 2257, 2683, 3481, 3646, 3748 |
| BstZ17I | GTATAC | 3 cut(s) | 968, 1943, 4031 |
| Bsu15I | ATCGAT | 1 cut(s) | 2186 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1821 |
| BsuI | GTATCC | 1 cut(s) | 3647 |
| BsuTUI | ATCGAT | 1 cut(s) | 2186 |
| BtgI | CCRYGG | 1 cut(s) | 3493 |
| BtsI | GCAGTG | 3 cut(s) | 2356, 2829, 3055 |
| BveI | ACCTGC | 1 cut(s) | 3146 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2543, 3344 |
| CciI | TCATGA | 2 cut(s) | 1066, 3144 |
| CfoI | GCGC | 3 cut(s) | 2622, 3403, 4088 |
| Cfr10I | RCCGGY | 1 cut(s) | 1255 |
| Cfr13I | GGNCC | 6 cut(s) | 2033, 2852, 2998, 3220, 3472, 3794 |
| Cfr9I | CCCGGG | 1 cut(s) | 388 |
| ClaI | ATCGAT | 1 cut(s) | 2186 |
| CseI | GACGC | 2 cut(s) | 1261, 3330 |
| CsiI | ACCWGGT | 1 cut(s) | 3772 |
| DraIII | CACNNNGTG | 1 cut(s) | 374 |
| Eam1104I | CTCTTC | 6 cut(s) | 11, 18, 1529, 2160, 2733, 2916 |
| EarI | CTCTTC | 6 cut(s) | 11, 18, 1529, 2160, 2733, 2916 |
| EciI | GGCGGA | 1 cut(s) | 3100 |
| Ecl136II | GAGCTC | 3 cut(s) | 754, 2170, 4074 |
| Eco130I | CCWWGG | 4 cut(s) | 1331, 2004, 3223, 3493 |
| Eco147I | AGGCCT | 2 cut(s) | 327, 1704 |
| Eco24I | GRGCYC | 4 cut(s) | 756, 2172, 3912, 4076 |
| Eco31I | GGTCTC | 2 cut(s) | 146, 1821 |
| Eco32I | GATATC | 1 cut(s) | 642 |
| Eco47I | GGWCC | 2 cut(s) | 2033, 2852 |
| Eco53kI | GAGCTC | 3 cut(s) | 754, 2170, 4074 |
| Eco57I | CTGAAG | 6 cut(s) | 242, 998, 1829, 2049, 3878, 3996 |
| Eco81I | CCTNAGG | 1 cut(s) | 1821 |
| Eco88I | CYCGRG | 2 cut(s) | 388, 1595 |
| Eco91I | GGTNACC | 1 cut(s) | 1277 |
| EcoICRI | GAGCTC | 3 cut(s) | 754, 2170, 4074 |
| EcoO65I | GGTNACC | 1 cut(s) | 1277 |
| EcoRI | GAATTC | 2 cut(s) | 75, 1413 |
| EcoRII | CCWGG | 7 cut(s) | 1545, 1609, 1978, 2319, 3150, 3772, 3796 |
| EcoRV | GATATC | 1 cut(s) | 642 |
| EcoT14I | CCWWGG | 4 cut(s) | 1331, 2004, 3223, 3493 |
| EcoT22I | ATGCAT | 4 cut(s) | 253, 415, 1465, 3385 |
| EcoT38I | GRGCYC | 4 cut(s) | 756, 2172, 3912, 4076 |
| ErhI | CCWWGG | 4 cut(s) | 1331, 2004, 3223, 3493 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2506, 2538, 2636, 2668 |
| FaqI | GGGAC | 4 cut(s) | 163, 1816, 2811, 3876 |
| FauI | CCCGC | 1 cut(s) | 3009 |
| FauNDI | CATATG | 1 cut(s) | 2388 |
| FblI | GTMKAC | 4 cut(s) | 967, 1942, 3174, 4030 |
| FriOI | GRGCYC | 4 cut(s) | 756, 2172, 3912, 4076 |
| FspBI | CTAG | 8 cut(s) | 839, 1338, 2309, 2717, 3194, 3624, 3728, 3789 |
| GlaI | GCGC | 3 cut(s) | 2621, 3402, 4087 |
| GsaI | CCCAGC | 3 cut(s) | 1119, 2177, 3671 |
| GsuI | CTGGAG | 1 cut(s) | 3630 |
| HaeII | RGCGCY | 1 cut(s) | 2623 |
| HapII | CCGG | 4 cut(s) | 33, 389, 1256, 3475 |
| HgaI | GACGC | 2 cut(s) | 1261, 3330 |
| HhaI | GCGC | 3 cut(s) | 2622, 3403, 4088 |
| Hin1I | GRCGYC | 1 cut(s) | 1253 |
| Hin6I | GCGC | 3 cut(s) | 2620, 3401, 4086 |
| HinP1I | GCGC | 3 cut(s) | 2620, 3401, 4086 |
| HincII | GTYRAC | 1 cut(s) | 2047 |
| HindII | GTYRAC | 1 cut(s) | 2047 |
| HindIII | AAGCTT | 2 cut(s) | 155, 4091 |
| HpaII | CCGG | 4 cut(s) | 33, 389, 1256, 3475 |
| HphI | GGTGA | 8 cut(s) | 98, 103, 179, 596, 1316, 1451, 2960, 3917 |
| Hpy99I | CGWCG | 2 cut(s) | 84, 1255 |
| HpyCH4IV | ACGT | 5 cut(s) | 288, 1057, 2154, 3828, 4027 |
| HpySE526I | ACGT | 5 cut(s) | 288, 1057, 2154, 3828, 4027 |
| Hsp92I | GRCGYC | 1 cut(s) | 1253 |
| HspAI | GCGC | 3 cut(s) | 2620, 3401, 4086 |
| KroI | GCCGGC | 1 cut(s) | 1255 |
| KroNI | GCCGGC | 1 cut(s) | 1257 |
| LguI | GCTCTTC | 2 cut(s) | 11, 2160 |
| MabI | ACCWGGT | 1 cut(s) | 3772 |
| MaeI | CTAG | 8 cut(s) | 839, 1338, 2309, 2717, 3194, 3624, 3728, 3789 |
| MaeII | ACGT | 5 cut(s) | 288, 1057, 2154, 3828, 4027 |
| MfeI | CAATTG | 3 cut(s) | 504, 1398, 3672 |
| MflI | RGATCY | 6 cut(s) | 1291, 2257, 2683, 3481, 3646, 3748 |
| MhlI | GDGCHC | 7 cut(s) | 599, 756, 1567, 2172, 3163, 3912, 4076 |
| MlyI | GAGTC | 2 cut(s) | 53, 93 |
| MmeI | TCCRAC | 2 cut(s) | 1520, 2011 |
| Mph1103I | ATGCAT | 4 cut(s) | 253, 415, 1465, 3385 |
| MroNI | GCCGGC | 1 cut(s) | 1255 |
| MroXI | GAANNNNTTC | 1 cut(s) | 791 |
| MslI | CAYNNNNRTG | 4 cut(s) | 786, 2278, 3626, 3870 |
| MspA1I | CMGCKG | 5 cut(s) | 1687, 1808, 2018, 3932, 4061 |
| MspCI | CTTAAG | 3 cut(s) | 827, 1036, 1706 |
| MspI | CCGG | 4 cut(s) | 33, 389, 1256, 3475 |
| MunI | CAATTG | 3 cut(s) | 504, 1398, 3672 |
| Mva1269I | GAATGC | 1 cut(s) | 1411 |
| MvaI | CCWGG | 7 cut(s) | 1547, 1611, 1980, 2321, 3152, 3774, 3798 |
| MvnI | CGCG | 2 cut(s) | 3403, 4086 |
| NaeI | GCCGGC | 1 cut(s) | 1257 |
| NciI | CCSGG | 4 cut(s) | 34, 389, 390, 3475 |
| NcoI | CCATGG | 1 cut(s) | 3493 |
| NdeI | CATATG | 1 cut(s) | 2388 |
| NgoMIV | GCCGGC | 1 cut(s) | 1255 |
| NlaIV | GGNNCC | 9 cut(s) | 261, 314, 1544, 2035, 2340, 3000, 3318, 3411, 3778 |
| NmuCI | GTSAC | 5 cut(s) | 653, 671, 2074, 2282, 3196 |
| NsiI | ATGCAT | 4 cut(s) | 253, 415, 1465, 3385 |
| NspI | RCATGY | 6 cut(s) | 255, 953, 1907, 3361, 3387, 3465 |
| NspV | TTCGAA | 2 cut(s) | 1219, 3038 |
| OliI | CACNNNNGTG | 1 cut(s) | 3626 |
| PaeI | GCATGC | 3 cut(s) | 255, 1907, 3465 |
| PagI | TCATGA | 2 cut(s) | 1066, 3144 |
| PaqCI | CACCTGC | 1 cut(s) | 3146 |
| PceI | AGGCCT | 2 cut(s) | 327, 1704 |
| PciI | ACATGT | 2 cut(s) | 949, 3357 |
| PciSI | GCTCTTC | 2 cut(s) | 11, 2160 |
| PctI | GAATGC | 1 cut(s) | 1411 |
| PdiI | GCCGGC | 1 cut(s) | 1257 |
| PdmI | GAANNNNTTC | 1 cut(s) | 791 |
| PfeI | GAWTC | 8 cut(s) | 344, 792, 973, 1229, 1958, 2563, 2776, 2884 |
| PflFI | GACNNNGTC | 1 cut(s) | 2288 |
| PleI | GAGTC | 2 cut(s) | 52, 92 |
| PpsI | GAGTC | 2 cut(s) | 52, 92 |
| Ppu21I | YACGTR | 1 cut(s) | 289 |
| PscI | ACATGT | 2 cut(s) | 949, 3357 |
| PshBI | ATTAAT | 1 cut(s) | 2937 |
| Psp124BI | GAGCTC | 3 cut(s) | 756, 2172, 4076 |
| Psp6I | CCWGG | 7 cut(s) | 1545, 1609, 1978, 2319, 3150, 3772, 3796 |
| PspEI | GGTNACC | 1 cut(s) | 1277 |
| PspFI | CCCAGC | 3 cut(s) | 1115, 2173, 3667 |
| PspGI | CCWGG | 7 cut(s) | 1545, 1609, 1978, 2319, 3150, 3772, 3796 |
| PspN4I | GGNNCC | 9 cut(s) | 261, 314, 1544, 2035, 2340, 3000, 3318, 3411, 3778 |
| PspPI | GGNCC | 6 cut(s) | 2033, 2852, 2998, 3220, 3472, 3794 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 601, 633, 951, 983 |
| PstI | CTGCAG | 2 cut(s) | 2539, 3373 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2543, 3344 |
| PsuI | RGATCY | 6 cut(s) | 1291, 2257, 2683, 3481, 3646, 3748 |
| PsyI | GACNNNGTC | 1 cut(s) | 2288 |
| PvuII | CAGCTG | 4 cut(s) | 1687, 1808, 2018, 3932 |
| RseI | CAYNNNNRTG | 4 cut(s) | 786, 2278, 3626, 3870 |
| SacI | GAGCTC | 3 cut(s) | 756, 2172, 4076 |
| SapI | GCTCTTC | 2 cut(s) | 11, 2160 |
| Sau96I | GGNCC | 6 cut(s) | 2033, 2852, 2998, 3220, 3472, 3794 |
| ScaI | AGTACT | 1 cut(s) | 837 |
| SchI | GAGTC | 2 cut(s) | 53, 93 |
| SduI | GDGCHC | 7 cut(s) | 599, 756, 1567, 2172, 3163, 3912, 4076 |
| SexAI | ACCWGGT | 1 cut(s) | 3772 |
| SfcI | CTRYAG | 2 cut(s) | 2535, 3369 |
| SfuI | TTCGAA | 2 cut(s) | 1219, 3038 |
| SinI | GGWCC | 2 cut(s) | 2033, 2852 |
| SmaI | CCCGGG | 1 cut(s) | 390 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 786, 2278, 3626, 3870 |
| SpeI | ACTAGT | 1 cut(s) | 3788 |
| SphI | GCATGC | 3 cut(s) | 255, 1907, 3465 |
| SseBI | AGGCCT | 2 cut(s) | 327, 1704 |
| SsiI | CCGC | 7 cut(s) | 1007, 2490, 2493, 2502, 3002, 3085, 4059 |
| SspI | AATATT | 3 cut(s) | 1917, 2961, 3271 |
| SspMI | CTAG | 8 cut(s) | 839, 1338, 2309, 2717, 3194, 3624, 3728, 3789 |
| SstI | GAGCTC | 3 cut(s) | 756, 2172, 4076 |
| StuI | AGGCCT | 2 cut(s) | 327, 1704 |
| StyI | CCWWGG | 4 cut(s) | 1331, 2004, 3223, 3493 |
| TaiI | ACGT | 5 cut(s) | 291, 1060, 2157, 3831, 4030 |
| TaqI | TCGA | 9 cut(s) | 47, 82, 1219, 1838, 2186, 2566, 3038, 3519, 3690 |
| TatI | WGTACW | 5 cut(s) | 188, 549, 835, 1160, 2990 |
| TauI | GCSGC | 2 cut(s) | 2493, 2505 |
| TfiI | GAWTC | 8 cut(s) | 344, 792, 973, 1229, 1958, 2563, 2776, 2884 |
| TseFI | GTSAC | 5 cut(s) | 653, 671, 2074, 2282, 3196 |
| Tsp45I | GTSAC | 5 cut(s) | 653, 671, 2074, 2282, 3196 |
| TspGWI | ACGGA | 4 cut(s) | 394, 740, 2612, 4048 |
| TspMI | CCCGGG | 1 cut(s) | 388 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2288 |
| Vha464I | CTTAAG | 3 cut(s) | 827, 1036, 1706 |
| VpaK11BI | GGWCC | 2 cut(s) | 2033, 2852 |
| VspI | ATTAAT | 1 cut(s) | 2937 |
| XceI | RCATGY | 6 cut(s) | 255, 953, 1907, 3361, 3387, 3465 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2630 |
| XmaI | CCCGGG | 1 cut(s) | 388 |
| XmiI | GTMKAC | 4 cut(s) | 967, 1942, 3174, 4030 |
| XmnI | GAANNNNTTC | 1 cut(s) | 791 |
| XspI | CTAG | 8 cut(s) | 839, 1338, 2309, 2717, 3194, 3624, 3728, 3789 |
| ZrmI | AGTACT | 1 cut(s) | 837 |
| Zsp2I | ATGCAT | 4 cut(s) | 253, 415, 1465, 3385 |