Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 224, 308 |
| AccII | CGCG | 1 cut(s) | 639 |
| AccIII | TCCGGA | 1 cut(s) | 526 |
| AciI | CCGC | 1 cut(s) | 342 |
| AcoI | YGGCCR | 1 cut(s) | 361 |
| AcsI | RAATTY | 1 cut(s) | 602 |
| AcyI | GRCGYC | 2 cut(s) | 221, 305 |
| AfaI | GTAC | 1 cut(s) | 473 |
| AgsI | TTSAA | 2 cut(s) | 74, 650 |
| AjiI | CACGTC | 2 cut(s) | 635, 658 |
| AluBI | AGCT | 3 cut(s) | 243, 327, 523 |
| AluI | AGCT | 3 cut(s) | 243, 327, 523 |
| Alw26I | GTCTC | 3 cut(s) | 228, 312, 524 |
| Ama87I | CYCGRG | 1 cut(s) | 510 |
| Aor13HI | TCCGGA | 1 cut(s) | 526 |
| AoxI | GGCC | 3 cut(s) | 198, 361, 513 |
| ApeKI | GCWGC | 2 cut(s) | 240, 324 |
| ApoI | RAATTY | 1 cut(s) | 602 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 295, 327 |
| AspS9I | GGNCC | 1 cut(s) | 513 |
| AsuHPI | GGTGA | 4 cut(s) | 243, 327, 417, 478 |
| AvaI | CYCGRG | 1 cut(s) | 510 |
| BbvI | GCAGC | 2 cut(s) | 252, 336 |
| BccI | CCATC | 2 cut(s) | 263, 557 |
| BcoDI | GTCTC | 3 cut(s) | 228, 312, 524 |
| BfaI | CTAG | 3 cut(s) | 9, 237, 321 |
| BfmI | CTRYAG | 1 cut(s) | 377 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 489 |
| BglII | AGATCT | 1 cut(s) | 675 |
| BisI | GCNGC | 2 cut(s) | 241, 325 |
| BlsI | GCNGC | 2 cut(s) | 242, 326 |
| BmeT110I | CYCGRG | 1 cut(s) | 510 |
| BmgBI | CACGTC | 2 cut(s) | 635, 658 |
| BmgT120I | GGNCC | 1 cut(s) | 513 |
| BsaHI | GRCGYC | 2 cut(s) | 221, 305 |
| BsaJI | CCNNGG | 1 cut(s) | 195 |
| BsaWI | WCCGGW | 1 cut(s) | 526 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 211, 241 |
| Bse118I | RCCGGY | 1 cut(s) | 488 |
| Bse1I | ACTGG | 2 cut(s) | 80, 118 |
| Bse3DI | GCAATG | 3 cut(s) | 401, 502, 606 |
| BseAI | TCCGGA | 1 cut(s) | 526 |
| BseDI | CCNNGG | 1 cut(s) | 195 |
| BseMI | GCAATG | 3 cut(s) | 401, 502, 606 |
| BseMII | CTCAG | 1 cut(s) | 533 |
| BseNI | ACTGG | 2 cut(s) | 80, 118 |
| BseRI | GAGGAG | 3 cut(s) | 193, 216, 438 |
| BseX3I | CGGCCG | 1 cut(s) | 361 |
| BseXI | GCAGC | 2 cut(s) | 252, 336 |
| Bsh1236I | CGCG | 1 cut(s) | 639 |
| Bsh1285I | CGRYCG | 1 cut(s) | 364 |
| BshFI | GGCC | 3 cut(s) | 200, 363, 515 |
| BsiEI | CGRYCG | 1 cut(s) | 364 |
| BsiHKCI | CYCGRG | 1 cut(s) | 510 |
| BsiSI | CCGG | 3 cut(s) | 360, 489, 527 |
| BslFI | GGGAC | 1 cut(s) | 527 |
| BsmAI | GTCTC | 3 cut(s) | 228, 312, 524 |
| BsmBI | CGTCTC | 2 cut(s) | 228, 312 |
| BsmFI | GGGAC | 1 cut(s) | 527 |
| BsmI | GAATGC | 1 cut(s) | 438 |
| BsnI | GGCC | 3 cut(s) | 200, 363, 515 |
| BsoBI | CYCGRG | 1 cut(s) | 510 |
| Bsp13I | TCCGGA | 1 cut(s) | 526 |
| Bsp143I | GATC | 1 cut(s) | 675 |
| BspACI | CCGC | 1 cut(s) | 342 |
| BspANI | GGCC | 3 cut(s) | 200, 363, 515 |
| BspCNI | CTCAG | 1 cut(s) | 532 |
| BspEI | TCCGGA | 1 cut(s) | 526 |
| BspFNI | CGCG | 1 cut(s) | 639 |
| BsrDI | GCAATG | 3 cut(s) | 401, 502, 606 |
| BsrFI | RCCGGY | 1 cut(s) | 488 |
| BsrI | ACTGG | 2 cut(s) | 80, 118 |
| BssAI | RCCGGY | 1 cut(s) | 488 |
| BssECI | CCNNGG | 1 cut(s) | 195 |
| BssMI | GATC | 1 cut(s) | 675 |
| BssNI | GRCGYC | 2 cut(s) | 221, 305 |
| Bst4CI | ACNGT | 1 cut(s) | 581 |
| BstACI | GRCGYC | 2 cut(s) | 221, 305 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstDEI | CTNAG | 4 cut(s) | 519, 552, 615, 663 |
| BstFNI | CGCG | 1 cut(s) | 639 |
| BstKTI | GATC | 1 cut(s) | 678 |
| BstMAI | GTCTC | 3 cut(s) | 228, 312, 524 |
| BstMBI | GATC | 1 cut(s) | 675 |
| BstMCI | CGRYCG | 1 cut(s) | 364 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 489 |
| BstNSI | RCATGY | 2 cut(s) | 34, 423 |
| BstSFI | CTRYAG | 1 cut(s) | 377 |
| BstUI | CGCG | 1 cut(s) | 639 |
| BstV1I | GCAGC | 2 cut(s) | 252, 336 |
| BstX2I | RGATCY | 1 cut(s) | 675 |
| BstYI | RGATCY | 1 cut(s) | 675 |
| BstZI | CGGCCG | 1 cut(s) | 361 |
| BsuRI | GGCC | 3 cut(s) | 200, 363, 515 |
| BtrI | CACGTC | 2 cut(s) | 635, 658 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| Cfr10I | RCCGGY | 1 cut(s) | 488 |
| Cfr13I | GGNCC | 1 cut(s) | 513 |
| Csp6I | GTAC | 1 cut(s) | 472 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 574, 609 |
| CviAII | CATG | 3 cut(s) | 31, 391, 420 |
| CviQI | GTAC | 1 cut(s) | 472 |
| DdeI | CTNAG | 4 cut(s) | 519, 552, 615, 663 |
| DpnI | GATC | 1 cut(s) | 677 |
| DpnII | GATC | 1 cut(s) | 675 |
| EaeI | YGGCCR | 1 cut(s) | 361 |
| EagI | CGGCCG | 1 cut(s) | 361 |
| EciI | GGCGGA | 1 cut(s) | 331 |
| EclXI | CGGCCG | 1 cut(s) | 361 |
| Eco52I | CGGCCG | 1 cut(s) | 361 |
| Eco88I | CYCGRG | 1 cut(s) | 510 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| Esp3I | CGTCTC | 2 cut(s) | 228, 312 |
| FaeI | CATG | 3 cut(s) | 34, 394, 423 |
| FaiI | YATR | 9 cut(s) | 32, 64, 135, 218, 302, 392, 421, 467, 699 |
| FaqI | GGGAC | 1 cut(s) | 527 |
| FatI | CATG | 3 cut(s) | 30, 390, 419 |
| Fnu4HI | GCNGC | 2 cut(s) | 241, 325 |
| Fsp4HI | GCNGC | 2 cut(s) | 241, 325 |
| FspBI | CTAG | 3 cut(s) | 9, 237, 321 |
| GluI | GCNGC | 2 cut(s) | 241, 325 |
| HaeIII | GGCC | 3 cut(s) | 200, 363, 515 |
| HapII | CCGG | 3 cut(s) | 360, 489, 527 |
| Hin1I | GRCGYC | 2 cut(s) | 221, 305 |
| Hin1II | CATG | 3 cut(s) | 34, 394, 423 |
| HinfI | GANTC | 3 cut(s) | 5, 232, 316 |
| HpaII | CCGG | 3 cut(s) | 360, 489, 527 |
| HphI | GGTGA | 4 cut(s) | 243, 327, 417, 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 425 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 231 |
| Hpy188III | TCNNGA | 2 cut(s) | 527, 650 |
| Hpy8I | GTNNAC | 1 cut(s) | 425 |
| Hpy99I | CGWCG | 3 cut(s) | 369, 639, 659 |
| HpyAV | CCTTC | 3 cut(s) | 183, 321, 486 |
| HpyCH4III | ACNGT | 1 cut(s) | 581 |
| HpyCH4IV | ACGT | 4 cut(s) | 221, 305, 634, 657 |
| HpyCH4V | TGCA | 4 cut(s) | 394, 419, 507, 570 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 489 |
| HpyF3I | CTNAG | 4 cut(s) | 519, 552, 615, 663 |
| HpySE526I | ACGT | 4 cut(s) | 221, 305, 634, 657 |
| Hsp92I | GRCGYC | 2 cut(s) | 221, 305 |
| Hsp92II | CATG | 3 cut(s) | 34, 394, 423 |
| Kpn2I | TCCGGA | 1 cut(s) | 526 |
| Kzo9I | GATC | 1 cut(s) | 675 |
| LmnI | GCTCC | 2 cut(s) | 248, 332 |
| LpnPI | CCDG | 7 cut(s) | 32, 93, 131, 373, 502, 540, 633 |
| Lsp1109I | GCAGC | 2 cut(s) | 252, 336 |
| MaeI | CTAG | 3 cut(s) | 9, 237, 321 |
| MaeII | ACGT | 4 cut(s) | 221, 305, 634, 657 |
| MaeIII | GTNAC | 1 cut(s) | 575 |
| MalI | GATC | 1 cut(s) | 677 |
| MboI | GATC | 1 cut(s) | 675 |
| MboII | GAAGA | 2 cut(s) | 434, 703 |
| MflI | RGATCY | 1 cut(s) | 675 |
| MluCI | AATT | 2 cut(s) | 602, 700 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MroI | TCCGGA | 1 cut(s) | 526 |
| MseI | TTAA | 4 cut(s) | 129, 414, 642, 703 |
| MspI | CCGG | 3 cut(s) | 360, 489, 527 |
| Mva1269I | GAATGC | 1 cut(s) | 438 |
| MvnI | CGCG | 1 cut(s) | 639 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 489 |
| NdeII | GATC | 1 cut(s) | 675 |
| NlaIII | CATG | 3 cut(s) | 34, 394, 423 |
| NmeAIII | GCCGAG | 2 cut(s) | 176, 248 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| NspI | RCATGY | 2 cut(s) | 34, 423 |
| PaeI | GCATGC | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 227, 311 |
| PctI | GAATGC | 1 cut(s) | 438 |
| PfeI | GAWTC | 3 cut(s) | 5, 232, 316 |
| PflFI | GACNNNGTC | 1 cut(s) | 633 |
| PkrI | GCNGC | 2 cut(s) | 242, 326 |
| PspPI | GGNCC | 1 cut(s) | 513 |
| PsuI | RGATCY | 1 cut(s) | 675 |
| PsyI | GACNNNGTC | 1 cut(s) | 633 |
| RsaI | GTAC | 1 cut(s) | 473 |
| RsaNI | GTAC | 1 cut(s) | 472 |
| SaqAI | TTAA | 4 cut(s) | 129, 414, 642, 703 |
| SatI | GCNGC | 2 cut(s) | 241, 325 |
| Sau3AI | GATC | 1 cut(s) | 675 |
| Sau96I | GGNCC | 1 cut(s) | 513 |
| SetI | ASST | 9 cut(s) | 224, 245, 308, 329, 525, 558, 590, 637, 660 |
| SfcI | CTRYAG | 1 cut(s) | 377 |
| SphI | GCATGC | 1 cut(s) | 34 |
| Sse9I | AATT | 2 cut(s) | 602, 700 |
| SsiI | CCGC | 1 cut(s) | 342 |
| SspMI | CTAG | 3 cut(s) | 9, 237, 321 |
| TaaI | ACNGT | 1 cut(s) | 581 |
| TaiI | ACGT | 4 cut(s) | 224, 308, 637, 660 |
| TaqI | TCGA | 2 cut(s) | 87, 314 |
| TasI | AATT | 2 cut(s) | 602, 700 |
| TfiI | GAWTC | 3 cut(s) | 5, 232, 316 |
| Tru1I | TTAA | 4 cut(s) | 129, 414, 642, 703 |
| Tru9I | TTAA | 4 cut(s) | 129, 414, 642, 703 |
| TseI | GCWGC | 2 cut(s) | 240, 324 |
| TspDTI | ATGAA | 2 cut(s) | 595, 639 |
| Tth111I | GACNNNGTC | 1 cut(s) | 633 |
| XapI | RAATTY | 1 cut(s) | 602 |
| XceI | RCATGY | 2 cut(s) | 34, 423 |
| XspI | CTAG | 3 cut(s) | 9, 237, 321 |
| ZraI | GACGTC | 2 cut(s) | 222, 306 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |