Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Histone | PF00125 | 44 - 131 | 1e-38 | Core histone H2A/H2B/H3/H4 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 255 |
| Acc65I | GGTACC | 1 cut(s) | 123 |
| AccB1I | GGYRCC | 1 cut(s) | 123 |
| AciI | CCGC | 5 cut(s) | 39, 116, 127, 287, 290 |
| AdeI | CACNNNGTG | 1 cut(s) | 268 |
| AfaI | GTAC | 3 cut(s) | 10, 125, 164 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 85, 98 |
| AgsI | TTSAA | 2 cut(s) | 238, 377 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AluBI | AGCT | 2 cut(s) | 181, 196 |
| AluI | AGCT | 2 cut(s) | 181, 196 |
| Alw21I | GWGCWC | 1 cut(s) | 176 |
| AoxI | GGCC | 3 cut(s) | 3, 87, 294 |
| ApeKI | GCWGC | 3 cut(s) | 74, 181, 277 |
| Asp718I | GGTACC | 1 cut(s) | 123 |
| AspLEI | GCGC | 2 cut(s) | 277, 335 |
| AspS9I | GGNCC | 3 cut(s) | 4, 88, 244 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 1 cut(s) | 410 |
| AvaII | GGWCC | 1 cut(s) | 244 |
| BanI | GGYRCC | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 176 |
| BbvI | GCAGC | 3 cut(s) | 86, 168, 264 |
| BceAI | ACGGC | 1 cut(s) | 251 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5, 39 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BciVI | GTATCC | 1 cut(s) | 313 |
| BclI | TGATCA | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BfaI | CTAG | 1 cut(s) | 384 |
| BfmI | CTRYAG | 1 cut(s) | 278 |
| BfoI | RGCGCY | 1 cut(s) | 278 |
| BfuAI | ACCTGC | 1 cut(s) | 255 |
| BfuI | GTATCC | 1 cut(s) | 313 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 272 |
| BisI | GCNGC | 6 cut(s) | 40, 75, 116, 182, 278, 288 |
| BlsI | GCNGC | 6 cut(s) | 41, 76, 117, 183, 279, 289 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 132 |
| Bme18I | GGWCC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 88, 244 |
| BmiI | GGNNCC | 4 cut(s) | 48, 90, 125, 136 |
| BmrFI | CCNGG | 2 cut(s) | 79, 132 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| BsaBI | GATNNNNATC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 3 cut(s) | 50, 130, 138 |
| BsaWI | WCCGGW | 1 cut(s) | 98 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 85, 98 |
| Bse118I | RCCGGY | 1 cut(s) | 35 |
| Bse1I | ACTGG | 1 cut(s) | 66 |
| Bse8I | GATNNNNATC | 1 cut(s) | 324 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 3 cut(s) | 50, 130, 138 |
| BseJI | GATNNNNATC | 1 cut(s) | 324 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 85, 98 |
| BseMII | CTCAG | 1 cut(s) | 242 |
| BseNI | ACTGG | 1 cut(s) | 66 |
| BseRI | GAGGAG | 1 cut(s) | 117 |
| BseXI | GCAGC | 3 cut(s) | 86, 168, 264 |
| BshFI | GGCC | 3 cut(s) | 5, 89, 296 |
| BshNI | GGYRCC | 1 cut(s) | 123 |
| BsiHKAI | GWGCWC | 1 cut(s) | 176 |
| BsiSI | CCGG | 3 cut(s) | 36, 79, 99 |
| BsiWI | CGTACG | 1 cut(s) | 8 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 85, 98 |
| BsnI | GGCC | 3 cut(s) | 5, 89, 296 |
| Bsp1286I | GDGCHC | 1 cut(s) | 176 |
| Bsp143I | GATC | 1 cut(s) | 186 |
| BspACI | CCGC | 5 cut(s) | 39, 116, 127, 287, 290 |
| BspANI | GGCC | 3 cut(s) | 5, 89, 296 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspLI | GGNNCC | 4 cut(s) | 48, 90, 125, 136 |
| BspMAI | CTGCAG | 1 cut(s) | 282 |
| BspMI | ACCTGC | 1 cut(s) | 255 |
| BspQI | GCTCTTC | 1 cut(s) | 164 |
| BspT107I | GGYRCC | 1 cut(s) | 123 |
| BsrFI | RCCGGY | 1 cut(s) | 35 |
| BsrI | ACTGG | 1 cut(s) | 66 |
| BssAI | RCCGGY | 1 cut(s) | 35 |
| BssECI | CCNNGG | 3 cut(s) | 50, 130, 138 |
| BssMI | GATC | 1 cut(s) | 186 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 1 cut(s) | 139 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDEI | CTNAG | 1 cut(s) | 228 |
| BstDSI | CCRYGG | 1 cut(s) | 138 |
| BstH2I | RGCGCY | 1 cut(s) | 278 |
| BstHHI | GCGC | 2 cut(s) | 277, 335 |
| BstKTI | GATC | 1 cut(s) | 189 |
| BstMBI | GATC | 1 cut(s) | 186 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 272, 293, 341 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstSCI | CCNGG | 2 cut(s) | 77, 130 |
| BstSFI | CTRYAG | 1 cut(s) | 278 |
| BstV1I | GCAGC | 3 cut(s) | 86, 168, 264 |
| BsuI | GTATCC | 1 cut(s) | 313 |
| BsuRI | GGCC | 3 cut(s) | 5, 89, 296 |
| BtgI | CCRYGG | 1 cut(s) | 138 |
| BveI | ACCTGC | 1 cut(s) | 255 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| CfoI | GCGC | 2 cut(s) | 277, 335 |
| Cfr10I | RCCGGY | 1 cut(s) | 35 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 88, 244 |
| Csp6I | GTAC | 3 cut(s) | 9, 124, 163 |
| CviAII | CATG | 1 cut(s) | 341 |
| CviQI | GTAC | 3 cut(s) | 9, 124, 163 |
| DdeI | CTNAG | 1 cut(s) | 228 |
| DpnI | GATC | 1 cut(s) | 188 |
| DpnII | GATC | 1 cut(s) | 186 |
| DraIII | CACNNNGTG | 1 cut(s) | 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| EciI | GGCGGA | 1 cut(s) | 305 |
| Eco147I | AGGCCT | 1 cut(s) | 296 |
| Eco47I | GGWCC | 1 cut(s) | 244 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| FaeI | CATG | 1 cut(s) | 344 |
| FaiI | YATR | 2 cut(s) | 342, 362 |
| FatI | CATG | 1 cut(s) | 340 |
| FbaI | TGATCA | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 6 cut(s) | 40, 75, 116, 182, 278, 288 |
| Fsp4HI | GCNGC | 6 cut(s) | 40, 75, 116, 182, 278, 288 |
| FspBI | CTAG | 1 cut(s) | 384 |
| GlaI | GCGC | 2 cut(s) | 276, 334 |
| GluI | GCNGC | 6 cut(s) | 40, 75, 116, 182, 278, 288 |
| HaeII | RGCGCY | 1 cut(s) | 278 |
| HaeIII | GGCC | 3 cut(s) | 5, 89, 296 |
| HapII | CCGG | 3 cut(s) | 36, 79, 99 |
| HhaI | GCGC | 2 cut(s) | 277, 335 |
| Hin1II | CATG | 1 cut(s) | 344 |
| Hin6I | GCGC | 2 cut(s) | 275, 333 |
| HinP1I | GCGC | 2 cut(s) | 275, 333 |
| HindIII | AAGCTT | 1 cut(s) | 194 |
| HinfI | GANTC | 2 cut(s) | 351, 390 |
| HpaII | CCGG | 3 cut(s) | 36, 79, 99 |
| HphI | GGTGA | 1 cut(s) | 410 |
| Hpy166II | GTNNAC | 1 cut(s) | 33 |
| Hpy188I | TCNGA | 2 cut(s) | 51, 158 |
| Hpy188III | TCNNGA | 6 cut(s) | 190, 205, 218, 230, 238, 256 |
| Hpy8I | GTNNAC | 1 cut(s) | 33 |
| Hpy99I | CGWCG | 1 cut(s) | 70 |
| HpyAV | CCTTC | 1 cut(s) | 64 |
| HpyCH4III | ACNGT | 1 cut(s) | 139 |
| HpyCH4V | TGCA | 1 cut(s) | 280 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 272, 293, 341 |
| HpyF3I | CTNAG | 1 cut(s) | 228 |
| Hsp92II | CATG | 1 cut(s) | 344 |
| HspAI | GCGC | 2 cut(s) | 275, 333 |
| KpnI | GGTACC | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 1 cut(s) | 186 |
| Kzo9I | GATC | 1 cut(s) | 186 |
| LguI | GCTCTTC | 1 cut(s) | 164 |
| LmnI | GCTCC | 2 cut(s) | 52, 178 |
| Lsp1109I | GCAGC | 3 cut(s) | 86, 168, 264 |
| MaeI | CTAG | 1 cut(s) | 384 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MalI | GATC | 1 cut(s) | 188 |
| MboI | GATC | 1 cut(s) | 186 |
| MboII | GAAGA | 2 cut(s) | 121, 181 |
| MhlI | GDGCHC | 1 cut(s) | 176 |
| MluCI | AATT | 1 cut(s) | 357 |
| MlyI | GAGTC | 1 cut(s) | 360 |
| MnlI | CCTC | 7 cut(s) | 45, 95, 201, 277, 286, 310, 396 |
| MseI | TTAA | 1 cut(s) | 409 |
| MslI | CAYNNNNRTG | 1 cut(s) | 359 |
| MspI | CCGG | 3 cut(s) | 36, 79, 99 |
| MspR9I | CCNGG | 2 cut(s) | 79, 132 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 272, 293, 341 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NdeII | GATC | 1 cut(s) | 186 |
| NlaIII | CATG | 1 cut(s) | 344 |
| NlaIV | GGNNCC | 4 cut(s) | 48, 90, 125, 136 |
| NmuCI | GTSAC | 1 cut(s) | 352 |
| PceI | AGGCCT | 1 cut(s) | 296 |
| PciSI | GCTCTTC | 1 cut(s) | 164 |
| PfeI | GAWTC | 1 cut(s) | 390 |
| Pfl23II | CGTACG | 1 cut(s) | 8 |
| PkrI | GCNGC | 6 cut(s) | 41, 76, 117, 183, 279, 289 |
| PleI | GAGTC | 1 cut(s) | 359 |
| PpsI | GAGTC | 1 cut(s) | 359 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspLI | CGTACG | 1 cut(s) | 8 |
| PspN4I | GGNNCC | 4 cut(s) | 48, 90, 125, 136 |
| PspPI | GGNCC | 3 cut(s) | 4, 88, 244 |
| PstI | CTGCAG | 1 cut(s) | 282 |
| RsaI | GTAC | 3 cut(s) | 10, 125, 164 |
| RsaNI | GTAC | 3 cut(s) | 9, 124, 163 |
| RseI | CAYNNNNRTG | 1 cut(s) | 359 |
| SapI | GCTCTTC | 1 cut(s) | 164 |
| SaqAI | TTAA | 1 cut(s) | 409 |
| SatI | GCNGC | 6 cut(s) | 40, 75, 116, 182, 278, 288 |
| Sau3AI | GATC | 1 cut(s) | 186 |
| Sau96I | GGNCC | 3 cut(s) | 4, 88, 244 |
| SchI | GAGTC | 1 cut(s) | 360 |
| ScrFI | CCNGG | 2 cut(s) | 79, 132 |
| SduI | GDGCHC | 1 cut(s) | 176 |
| SetI | ASST | 5 cut(s) | 125, 183, 198, 249, 303 |
| SfcI | CTRYAG | 1 cut(s) | 278 |
| SgrAI | CRCCGGYG | 1 cut(s) | 35 |
| SinI | GGWCC | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 359 |
| Sse9I | AATT | 1 cut(s) | 357 |
| SseBI | AGGCCT | 1 cut(s) | 296 |
| SsiI | CCGC | 5 cut(s) | 39, 116, 127, 287, 290 |
| SspMI | CTAG | 1 cut(s) | 384 |
| StuI | AGGCCT | 1 cut(s) | 296 |
| StyD4I | CCNGG | 2 cut(s) | 77, 130 |
| TaaI | ACNGT | 1 cut(s) | 139 |
| TasI | AATT | 1 cut(s) | 357 |
| TauI | GCSGC | 3 cut(s) | 42, 118, 290 |
| TfiI | GAWTC | 1 cut(s) | 390 |
| Tru1I | TTAA | 1 cut(s) | 409 |
| Tru9I | TTAA | 1 cut(s) | 409 |
| TseFI | GTSAC | 1 cut(s) | 352 |
| TseI | GCWGC | 3 cut(s) | 74, 181, 277 |
| Tsp45I | GTSAC | 1 cut(s) | 352 |
| TspDTI | ATGAA | 1 cut(s) | 329 |
| TspGWI | ACGGA | 4 cut(s) | 137, 189, 191, 257 |
| VpaK11BI | GGWCC | 1 cut(s) | 244 |
| XspI | CTAG | 1 cut(s) | 384 |