ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 206 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 183 |
| AccII | CGCG | 2 cut(s) | 89, 255 |
| AccIII | TCCGGA | 1 cut(s) | 604 |
| AciI | CCGC | 4 cut(s) | 87, 253, 528, 539 |
| AcsI | RAATTY | 2 cut(s) | 154, 507 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 45, 179, 183, 231, 232 |
| AgsI | TTSAA | 3 cut(s) | 154, 326, 433 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AluBI | AGCT | 5 cut(s) | 58, 81, 100, 131, 429 |
| AluI | AGCT | 5 cut(s) | 58, 81, 100, 131, 429 |
| Alw26I | GTCTC | 1 cut(s) | 171 |
| Aor13HI | TCCGGA | 1 cut(s) | 604 |
| AoxI | GGCC | 4 cut(s) | 69, 105, 140, 561 |
| ApeKI | GCWGC | 2 cut(s) | 218, 335 |
| ApoI | RAATTY | 2 cut(s) | 154, 507 |
| AspS9I | GGNCC | 2 cut(s) | 70, 498 |
| AsuC2I | CCSGG | 3 cut(s) | 139, 356, 476 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaII | GGWCC | 1 cut(s) | 498 |
| BanI | GGYRCC | 1 cut(s) | 206 |
| BbvI | GCAGC | 2 cut(s) | 205, 322 |
| BccI | CCATC | 4 cut(s) | 44, 156, 197, 325 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BcnI | CCSGG | 3 cut(s) | 139, 356, 476 |
| BcoDI | GTCTC | 1 cut(s) | 171 |
| BfaI | CTAG | 3 cut(s) | 339, 389, 616 |
| BfmI | CTRYAG | 1 cut(s) | 126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 560 |
| BisI | GCNGC | 4 cut(s) | 87, 219, 336, 540 |
| BlsI | GCNGC | 4 cut(s) | 88, 220, 337, 541 |
| Bme1390I | CCNGG | 4 cut(s) | 74, 139, 356, 476 |
| Bme18I | GGWCC | 1 cut(s) | 498 |
| BmgT120I | GGNCC | 2 cut(s) | 70, 498 |
| BmiI | GGNNCC | 3 cut(s) | 208, 499, 600 |
| BmrFI | CCNGG | 4 cut(s) | 74, 139, 356, 476 |
| BmsI | GCATC | 1 cut(s) | 388 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 385, 417 |
| BpmI | CTGGAG | 2 cut(s) | 122, 297 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| BpuMI | CCSGG | 3 cut(s) | 139, 356, 476 |
| BsaI | GGTCTC | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 4 cut(s) | 22, 72, 137, 177 |
| BsaWI | WCCGGW | 1 cut(s) | 604 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 45, 179, 183, 231, 232 |
| Bse3DI | GCAATG | 1 cut(s) | 383 |
| BseAI | TCCGGA | 1 cut(s) | 604 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseDI | CCNNGG | 4 cut(s) | 22, 72, 137, 177 |
| BseGI | GGATG | 3 cut(s) | 55, 443, 472 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 45, 179, 183, 231, 232 |
| BseMI | GCAATG | 1 cut(s) | 383 |
| BseXI | GCAGC | 2 cut(s) | 205, 322 |
| Bsh1236I | CGCG | 2 cut(s) | 89, 255 |
| BshFI | GGCC | 4 cut(s) | 71, 107, 142, 563 |
| BshNI | GGYRCC | 1 cut(s) | 206 |
| BsiSI | CCGG | 5 cut(s) | 68, 139, 355, 475, 605 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 45, 179, 183, 231, 232 |
| BsmAI | GTCTC | 1 cut(s) | 171 |
| BsmI | GAATGC | 1 cut(s) | 40 |
| BsnI | GGCC | 4 cut(s) | 71, 107, 142, 563 |
| Bso31I | GGTCTC | 1 cut(s) | 171 |
| Bsp13I | TCCGGA | 1 cut(s) | 604 |
| BspACI | CCGC | 4 cut(s) | 87, 253, 528, 539 |
| BspANI | GGCC | 4 cut(s) | 71, 107, 142, 563 |
| BspEI | TCCGGA | 1 cut(s) | 604 |
| BspFNI | CGCG | 2 cut(s) | 89, 255 |
| BspLI | GGNNCC | 3 cut(s) | 208, 499, 600 |
| BspT107I | GGYRCC | 1 cut(s) | 206 |
| BspTNI | GGTCTC | 1 cut(s) | 171 |
| BsrDI | GCAATG | 1 cut(s) | 383 |
| BssECI | CCNNGG | 4 cut(s) | 22, 72, 137, 177 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst6I | CTCTTC | 2 cut(s) | 174, 428 |
| BstC8I | GCNNGC | 1 cut(s) | 56 |
| BstDEI | CTNAG | 1 cut(s) | 565 |
| BstDSI | CCRYGG | 1 cut(s) | 177 |
| BstF5I | GGATG | 3 cut(s) | 55, 443, 472 |
| BstFNI | CGCG | 2 cut(s) | 89, 255 |
| BstMAI | GTCTC | 1 cut(s) | 171 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 215, 536, 560 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstSCI | CCNGG | 4 cut(s) | 72, 137, 354, 474 |
| BstSFI | CTRYAG | 1 cut(s) | 126 |
| BstUI | CGCG | 2 cut(s) | 89, 255 |
| BstV1I | GCAGC | 2 cut(s) | 205, 322 |
| BsuRI | GGCC | 4 cut(s) | 71, 107, 142, 563 |
| BtgI | CCRYGG | 1 cut(s) | 177 |
| BtgZI | GCGATG | 1 cut(s) | 411 |
| BtsCI | GGATG | 3 cut(s) | 55, 443, 472 |
| Cac8I | GCNNGC | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 2 cut(s) | 70, 498 |
| CviAII | CATG | 1 cut(s) | 302 |
| DdeI | CTNAG | 1 cut(s) | 565 |
| Eam1104I | CTCTTC | 2 cut(s) | 174, 428 |
| EarI | CTCTTC | 2 cut(s) | 174, 428 |
| EciI | GGCGGA | 1 cut(s) | 517 |
| Eco147I | AGGCCT | 1 cut(s) | 107 |
| Eco31I | GGTCTC | 1 cut(s) | 171 |
| Eco47I | GGWCC | 1 cut(s) | 498 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| EcoO109I | RGGNCCY | 1 cut(s) | 498 |
| EcoRI | GAATTC | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| FaeI | CATG | 1 cut(s) | 305 |
| FaiI | YATR | 9 cut(s) | 46, 273, 303, 318, 320, 362, 374, 516, 546 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 548, 580 |
| FatI | CATG | 1 cut(s) | 301 |
| FauNDI | CATATG | 1 cut(s) | 318 |
| Fnu4HI | GCNGC | 4 cut(s) | 87, 219, 336, 540 |
| FokI | GGATG | 3 cut(s) | 62, 430, 479 |
| Fsp4HI | GCNGC | 4 cut(s) | 87, 219, 336, 540 |
| FspBI | CTAG | 3 cut(s) | 339, 389, 616 |
| GluI | GCNGC | 4 cut(s) | 87, 219, 336, 540 |
| GsuI | CTGGAG | 2 cut(s) | 122, 297 |
| HaeIII | GGCC | 4 cut(s) | 71, 107, 142, 563 |
| HapII | CCGG | 5 cut(s) | 68, 139, 355, 475, 605 |
| Hin1II | CATG | 1 cut(s) | 305 |
| HindIII | AAGCTT | 1 cut(s) | 56 |
| HinfI | GANTC | 3 cut(s) | 64, 91, 481 |
| HpaII | CCGG | 5 cut(s) | 68, 139, 355, 475, 605 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 1 cut(s) | 417 |
| Hpy188III | TCNNGA | 2 cut(s) | 159, 605 |
| Hpy99I | CGWCG | 1 cut(s) | 260 |
| HpyAV | CCTTC | 1 cut(s) | 338 |
| HpyCH4V | TGCA | 3 cut(s) | 364, 376, 406 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 215, 536, 560 |
| HpyF3I | CTNAG | 1 cut(s) | 565 |
| Hsp92II | CATG | 1 cut(s) | 305 |
| Kpn2I | TCCGGA | 1 cut(s) | 604 |
| LmnI | GCTCC | 1 cut(s) | 426 |
| Lsp1109I | GCAGC | 2 cut(s) | 205, 322 |
| LweI | GCATC | 1 cut(s) | 388 |
| MaeI | CTAG | 3 cut(s) | 339, 389, 616 |
| MaeIII | GTNAC | 2 cut(s) | 26, 266 |
| MboII | GAAGA | 3 cut(s) | 86, 161, 445 |
| MfeI | CAATTG | 2 cut(s) | 149, 227 |
| MluCI | AATT | 5 cut(s) | 9, 149, 154, 227, 507 |
| MlyI | GAGTC | 1 cut(s) | 490 |
| MroI | TCCGGA | 1 cut(s) | 604 |
| MseI | TTAA | 2 cut(s) | 189, 611 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| MspA1I | CMGCKG | 1 cut(s) | 100 |
| MspI | CCGG | 5 cut(s) | 68, 139, 355, 475, 605 |
| MspR9I | CCNGG | 4 cut(s) | 74, 139, 356, 476 |
| MunI | CAATTG | 2 cut(s) | 149, 227 |
| Mva1269I | GAATGC | 1 cut(s) | 40 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MvnI | CGCG | 2 cut(s) | 89, 255 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 215, 536, 560 |
| NciI | CCSGG | 3 cut(s) | 139, 356, 476 |
| NdeI | CATATG | 1 cut(s) | 318 |
| NlaIII | CATG | 1 cut(s) | 305 |
| NlaIV | GGNNCC | 3 cut(s) | 208, 499, 600 |
| NmuCI | GTSAC | 1 cut(s) | 26 |
| PceI | AGGCCT | 1 cut(s) | 107 |
| PctI | GAATGC | 1 cut(s) | 40 |
| PfeI | GAWTC | 2 cut(s) | 64, 91 |
| PflFI | GACNNNGTC | 1 cut(s) | 260 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 183 |
| PfoI | TCCNGGA | 1 cut(s) | 474 |
| PkrI | GCNGC | 4 cut(s) | 88, 220, 337, 541 |
| PleI | GAGTC | 1 cut(s) | 489 |
| PpsI | GAGTC | 1 cut(s) | 489 |
| PpuMI | RGGWCCY | 1 cut(s) | 498 |
| Psp5II | RGGWCCY | 1 cut(s) | 498 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 3 cut(s) | 208, 499, 600 |
| PspPI | GGNCC | 2 cut(s) | 70, 498 |
| PspPPI | RGGWCCY | 1 cut(s) | 498 |
| PsyI | GACNNNGTC | 1 cut(s) | 260 |
| PvuII | CAGCTG | 1 cut(s) | 100 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SaqAI | TTAA | 2 cut(s) | 189, 611 |
| SatI | GCNGC | 4 cut(s) | 87, 219, 336, 540 |
| Sau96I | GGNCC | 2 cut(s) | 70, 498 |
| SchI | GAGTC | 1 cut(s) | 490 |
| ScrFI | CCNGG | 4 cut(s) | 74, 139, 356, 476 |
| SetI | ASST | 9 cut(s) | 60, 83, 102, 127, 133, 283, 349, 431, 604 |
| SfaNI | GCATC | 1 cut(s) | 388 |
| SfcI | CTRYAG | 1 cut(s) | 126 |
| SinI | GGWCC | 1 cut(s) | 498 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 5 cut(s) | 9, 149, 154, 227, 507 |
| SseBI | AGGCCT | 1 cut(s) | 107 |
| SsiI | CCGC | 4 cut(s) | 87, 253, 528, 539 |
| SspMI | CTAG | 3 cut(s) | 339, 389, 616 |
| StuI | AGGCCT | 1 cut(s) | 107 |
| StyD4I | CCNGG | 4 cut(s) | 72, 137, 354, 474 |
| TaqII | GACCGA | 1 cut(s) | 14 |
| TasI | AATT | 5 cut(s) | 9, 149, 154, 227, 507 |
| TauI | GCSGC | 2 cut(s) | 89, 542 |
| TfiI | GAWTC | 2 cut(s) | 64, 91 |
| Tru1I | TTAA | 2 cut(s) | 189, 611 |
| Tru9I | TTAA | 2 cut(s) | 189, 611 |
| TseFI | GTSAC | 1 cut(s) | 26 |
| TseI | GCWGC | 2 cut(s) | 218, 335 |
| Tsp45I | GTSAC | 1 cut(s) | 26 |
| TspGWI | ACGGA | 1 cut(s) | 382 |
| Tth111I | GACNNNGTC | 1 cut(s) | 260 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 498 |
| XapI | RAATTY | 2 cut(s) | 154, 507 |
| XspI | CTAG | 3 cut(s) | 339, 389, 616 |