zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 82 - 201 | 8.6e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 549 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 93 |
| AciI | CCGC | 2 cut(s) | 326, 571 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AfaI | GTAC | 1 cut(s) | 264 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 28, 93, 277, 547 |
| AgsI | TTSAA | 5 cut(s) | 19, 41, 440, 535, 617 |
| AhlI | ACTAGT | 1 cut(s) | 340 |
| AluBI | AGCT | 9 cut(s) | 14, 46, 173, 241, 357, 362, 376, 547, 602 |
| AluI | AGCT | 9 cut(s) | 14, 46, 173, 241, 357, 362, 376, 547, 602 |
| Alw21I | GWGCWC | 2 cut(s) | 359, 378 |
| Alw26I | GTCTC | 1 cut(s) | 222 |
| AoxI | GGCC | 1 cut(s) | 390 |
| ApeKI | GCWGC | 2 cut(s) | 224, 544 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| AspS9I | GGNCC | 1 cut(s) | 566 |
| AsuHPI | GGTGA | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 566 |
| BanII | GRGCYC | 2 cut(s) | 359, 378 |
| BauI | CACGAG | 1 cut(s) | 168 |
| BbsI | GAAGAC | 1 cut(s) | 418 |
| Bbv12I | GWGCWC | 2 cut(s) | 359, 378 |
| BbvI | GCAGC | 2 cut(s) | 236, 556 |
| BccI | CCATC | 1 cut(s) | 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 362, 396 |
| BciVI | GTATCC | 1 cut(s) | 94 |
| BcoDI | GTCTC | 1 cut(s) | 222 |
| BcuI | ACTAGT | 1 cut(s) | 340 |
| BfaI | CTAG | 7 cut(s) | 108, 119, 174, 309, 341, 398, 599 |
| BfmI | CTRYAG | 1 cut(s) | 542 |
| BfuAI | ACCTGC | 1 cut(s) | 549 |
| BfuI | GTATCC | 1 cut(s) | 94 |
| BisI | GCNGC | 3 cut(s) | 225, 327, 545 |
| BlpI | GCTNAGC | 1 cut(s) | 358 |
| BlsI | GCNGC | 3 cut(s) | 226, 328, 546 |
| Bme18I | GGWCC | 1 cut(s) | 566 |
| BmgT120I | GGNCC | 1 cut(s) | 566 |
| BmiI | GGNNCC | 1 cut(s) | 568 |
| BmsI | GCATC | 1 cut(s) | 42 |
| BpiI | GAAGAC | 1 cut(s) | 418 |
| BpmI | CTGGAG | 3 cut(s) | 170, 204, 468 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 28, 93, 277, 547 |
| Bse1I | ACTGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 28, 93, 277, 547 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseNI | ACTGG | 1 cut(s) | 485 |
| BseXI | GCAGC | 2 cut(s) | 236, 556 |
| BshFI | GGCC | 1 cut(s) | 392 |
| BsiHKAI | GWGCWC | 2 cut(s) | 359, 378 |
| BsiSI | CCGG | 1 cut(s) | 393 |
| BslFI | GGGAC | 3 cut(s) | 78, 517, 552 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 28, 93, 277, 547 |
| BsmAI | GTCTC | 1 cut(s) | 222 |
| BsmFI | GGGAC | 3 cut(s) | 78, 517, 552 |
| BsmI | GAATGC | 1 cut(s) | 294 |
| BsnI | GGCC | 1 cut(s) | 392 |
| Bsp1286I | GDGCHC | 2 cut(s) | 359, 378 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 358 |
| BspACI | CCGC | 2 cut(s) | 326, 571 |
| BspANI | GGCC | 1 cut(s) | 392 |
| BspCNI | CTCAG | 1 cut(s) | 371 |
| BspLI | GGNNCC | 1 cut(s) | 568 |
| BspMAI | CTGCAG | 1 cut(s) | 546 |
| BspMI | ACCTGC | 1 cut(s) | 549 |
| BsrI | ACTGG | 1 cut(s) | 485 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssSI | CACGAG | 1 cut(s) | 168 |
| Bst2BI | CACGAG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 2 cut(s) | 69, 93 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 550 |
| BstDEI | CTNAG | 3 cut(s) | 23, 276, 358 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 275 |
| BstMAI | GTCTC | 1 cut(s) | 222 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 52, 389, 550, 608 |
| BstSFI | CTRYAG | 1 cut(s) | 542 |
| BstV1I | GCAGC | 2 cut(s) | 236, 556 |
| BstV2I | GAAGAC | 1 cut(s) | 418 |
| BsuI | GTATCC | 1 cut(s) | 94 |
| BsuRI | GGCC | 1 cut(s) | 392 |
| BtsI | GCAGTG | 1 cut(s) | 481 |
| BtsIMutI | CAGTG | 1 cut(s) | 481 |
| BveI | ACCTGC | 1 cut(s) | 549 |
| Cfr13I | GGNCC | 1 cut(s) | 566 |
| Csp6I | GTAC | 1 cut(s) | 263 |
| CviAII | CATG | 3 cut(s) | 139, 210, 368 |
| CviQI | GTAC | 1 cut(s) | 263 |
| DdeI | CTNAG | 3 cut(s) | 23, 276, 358 |
| Ecl136II | GAGCTC | 2 cut(s) | 357, 376 |
| Eco24I | GRGCYC | 2 cut(s) | 359, 378 |
| Eco47I | GGWCC | 1 cut(s) | 566 |
| Eco53kI | GAGCTC | 2 cut(s) | 357, 376 |
| EcoICRI | GAGCTC | 2 cut(s) | 357, 376 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 275 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoT22I | ATGCAT | 1 cut(s) | 211 |
| EcoT38I | GRGCYC | 2 cut(s) | 359, 378 |
| FaeI | CATG | 3 cut(s) | 142, 213, 371 |
| FaqI | GGGAC | 3 cut(s) | 78, 517, 552 |
| FatI | CATG | 3 cut(s) | 138, 209, 367 |
| FauI | CCCGC | 1 cut(s) | 578 |
| FauNDI | CATATG | 2 cut(s) | 259, 470 |
| Fnu4HI | GCNGC | 3 cut(s) | 225, 327, 545 |
| FriOI | GRGCYC | 2 cut(s) | 359, 378 |
| Fsp4HI | GCNGC | 3 cut(s) | 225, 327, 545 |
| FspBI | CTAG | 7 cut(s) | 108, 119, 174, 309, 341, 398, 599 |
| GluI | GCNGC | 3 cut(s) | 225, 327, 545 |
| GsuI | CTGGAG | 3 cut(s) | 170, 204, 468 |
| HaeIII | GGCC | 1 cut(s) | 392 |
| HapII | CCGG | 1 cut(s) | 393 |
| Hin1II | CATG | 3 cut(s) | 142, 213, 371 |
| HincII | GTYRAC | 1 cut(s) | 517 |
| HindII | GTYRAC | 1 cut(s) | 517 |
| HindIII | AAGCTT | 2 cut(s) | 12, 239 |
| HinfI | GANTC | 2 cut(s) | 505, 617 |
| HpaII | CCGG | 1 cut(s) | 393 |
| HphI | GGTGA | 1 cut(s) | 260 |
| Hpy166II | GTNNAC | 1 cut(s) | 517 |
| Hpy188I | TCNGA | 2 cut(s) | 81, 525 |
| Hpy188III | TCNNGA | 4 cut(s) | 49, 119, 168, 535 |
| Hpy8I | GTNNAC | 1 cut(s) | 517 |
| HpyAV | CCTTC | 1 cut(s) | 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 69, 93 |
| HpyCH4IV | ACGT | 1 cut(s) | 233 |
| HpyCH4V | TGCA | 4 cut(s) | 138, 209, 474, 544 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 52, 389, 550, 608 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 276, 358 |
| HpySE526I | ACGT | 1 cut(s) | 233 |
| Hsp92II | CATG | 3 cut(s) | 142, 213, 371 |
| LmnI | GCTCC | 1 cut(s) | 381 |
| LpnPI | CCDG | 9 cut(s) | 134, 234, 374, 406, 409, 498, 533, 554, 588 |
| Lsp1109I | GCAGC | 2 cut(s) | 236, 556 |
| LweI | GCATC | 1 cut(s) | 42 |
| MaeI | CTAG | 7 cut(s) | 108, 119, 174, 309, 341, 398, 599 |
| MaeII | ACGT | 1 cut(s) | 233 |
| MaeIII | GTNAC | 2 cut(s) | 165, 302 |
| MboII | GAAGA | 2 cut(s) | 290, 423 |
| MhlI | GDGCHC | 2 cut(s) | 359, 378 |
| MluCI | AATT | 4 cut(s) | 155, 418, 510, 622 |
| MlyI | GAGTC | 1 cut(s) | 499 |
| MnlI | CCTC | 8 cut(s) | 25, 91, 126, 145, 183, 276, 281, 284 |
| Mph1103I | ATGCAT | 1 cut(s) | 211 |
| MseI | TTAA | 3 cut(s) | 236, 243, 631 |
| MspA1I | CMGCKG | 1 cut(s) | 547 |
| MspI | CCGG | 1 cut(s) | 393 |
| Mva1269I | GAATGC | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 52, 389, 550, 608 |
| NdeI | CATATG | 2 cut(s) | 259, 470 |
| NlaIII | CATG | 3 cut(s) | 142, 213, 371 |
| NlaIV | GGNNCC | 1 cut(s) | 568 |
| NmeAIII | GCCGAG | 1 cut(s) | 213 |
| NmuCI | GTSAC | 1 cut(s) | 165 |
| NsiI | ATGCAT | 1 cut(s) | 211 |
| PctI | GAATGC | 1 cut(s) | 294 |
| PfeI | GAWTC | 1 cut(s) | 617 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 93 |
| PkrI | GCNGC | 3 cut(s) | 226, 328, 546 |
| PleI | GAGTC | 1 cut(s) | 499 |
| PpsI | GAGTC | 1 cut(s) | 499 |
| Psp124BI | GAGCTC | 2 cut(s) | 359, 378 |
| PspN4I | GGNNCC | 1 cut(s) | 568 |
| PspPI | GGNCC | 1 cut(s) | 566 |
| PstI | CTGCAG | 1 cut(s) | 546 |
| PvuII | CAGCTG | 1 cut(s) | 547 |
| RsaI | GTAC | 1 cut(s) | 264 |
| RsaNI | GTAC | 1 cut(s) | 263 |
| SacI | GAGCTC | 2 cut(s) | 359, 378 |
| SaqAI | TTAA | 3 cut(s) | 236, 243, 631 |
| SatI | GCNGC | 3 cut(s) | 225, 327, 545 |
| Sau96I | GGNCC | 1 cut(s) | 566 |
| SchI | GAGTC | 1 cut(s) | 499 |
| SduI | GDGCHC | 2 cut(s) | 359, 378 |
| SfaNI | GCATC | 1 cut(s) | 42 |
| SfcI | CTRYAG | 1 cut(s) | 542 |
| SinI | GGWCC | 1 cut(s) | 566 |
| SpeI | ACTAGT | 1 cut(s) | 340 |
| Sse9I | AATT | 4 cut(s) | 155, 418, 510, 622 |
| SsiI | CCGC | 2 cut(s) | 326, 571 |
| SspMI | CTAG | 7 cut(s) | 108, 119, 174, 309, 341, 398, 599 |
| SstI | GAGCTC | 2 cut(s) | 359, 378 |
| TaaI | ACNGT | 2 cut(s) | 69, 93 |
| TaiI | ACGT | 1 cut(s) | 236 |
| TaqI | TCGA | 2 cut(s) | 372, 583 |
| TaqII | GACCGA | 1 cut(s) | 554 |
| TasI | AATT | 4 cut(s) | 155, 418, 510, 622 |
| TauI | GCSGC | 1 cut(s) | 329 |
| TfiI | GAWTC | 1 cut(s) | 617 |
| Tru1I | TTAA | 3 cut(s) | 236, 243, 631 |
| Tru9I | TTAA | 3 cut(s) | 236, 243, 631 |
| TscAI | CASTG | 1 cut(s) | 481 |
| TseFI | GTSAC | 1 cut(s) | 165 |
| TseI | GCWGC | 2 cut(s) | 224, 544 |
| Tsp45I | GTSAC | 1 cut(s) | 165 |
| TspGWI | ACGGA | 1 cut(s) | 44 |
| TspRI | CASTG | 1 cut(s) | 481 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 93 |
| VpaK11BI | GGWCC | 1 cut(s) | 566 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 275 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XbaI | TCTAGA | 1 cut(s) | 118 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 599 |
| XspI | CTAG | 7 cut(s) | 108, 119, 174, 309, 341, 398, 599 |
| Zsp2I | ATGCAT | 1 cut(s) | 211 |