Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 79 | 1.1e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 52 |
| AciI | CCGC | 1 cut(s) | 86 |
| AclWI | GGATC | 1 cut(s) | 286 |
| AfaI | GTAC | 1 cut(s) | 328 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AluBI | AGCT | 1 cut(s) | 168 |
| AluI | AGCT | 1 cut(s) | 168 |
| Alw21I | GWGCWC | 1 cut(s) | 170 |
| Alw26I | GTCTC | 1 cut(s) | 65 |
| AlwI | GGATC | 1 cut(s) | 286 |
| AoxI | GGCC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 1 cut(s) | 220 |
| AsuC2I | CCSGG | 1 cut(s) | 296 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 100 |
| BanII | GRGCYC | 1 cut(s) | 170 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 1 cut(s) | 170 |
| BceAI | ACGGC | 1 cut(s) | 111 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 65, 99 |
| BcnI | CCSGG | 1 cut(s) | 296 |
| BcoDI | GTCTC | 1 cut(s) | 65 |
| BfaI | CTAG | 2 cut(s) | 243, 257 |
| BglII | AGATCT | 1 cut(s) | 118 |
| BmcAI | AGTACT | 1 cut(s) | 328 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 1 cut(s) | 220 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| BpuMI | CCSGG | 1 cut(s) | 296 |
| BsaI | GGTCTC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 1 cut(s) | 46 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseDI | CCNNGG | 1 cut(s) | 46 |
| BseGI | GGATG | 1 cut(s) | 304 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BshFI | GGCC | 1 cut(s) | 221 |
| BsiHKAI | GWGCWC | 1 cut(s) | 170 |
| BsiSI | CCGG | 1 cut(s) | 295 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmAI | GTCTC | 1 cut(s) | 65 |
| BsnI | GGCC | 1 cut(s) | 221 |
| Bso31I | GGTCTC | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 1 cut(s) | 170 |
| Bsp143I | GATC | 3 cut(s) | 118, 191, 291 |
| BspACI | CCGC | 1 cut(s) | 86 |
| BspANI | GGCC | 1 cut(s) | 221 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspPI | GGATC | 1 cut(s) | 286 |
| BspQI | GCTCTTC | 1 cut(s) | 105 |
| BspTNI | GGTCTC | 1 cut(s) | 65 |
| BssECI | CCNNGG | 1 cut(s) | 46 |
| BssMI | GATC | 3 cut(s) | 118, 191, 291 |
| BssT1I | CCWWGG | 1 cut(s) | 46 |
| Bst4CI | ACNGT | 1 cut(s) | 80 |
| Bst6I | CTCTTC | 1 cut(s) | 105 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstF5I | GGATG | 1 cut(s) | 304 |
| BstKTI | GATC | 3 cut(s) | 121, 194, 294 |
| BstMAI | GTCTC | 1 cut(s) | 65 |
| BstMBI | GATC | 3 cut(s) | 118, 191, 291 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 221 |
| BtsCI | GGATG | 1 cut(s) | 304 |
| Cfr13I | GGNCC | 1 cut(s) | 220 |
| CseI | GACGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 327 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 198, 233 |
| CviAII | CATG | 2 cut(s) | 52, 318 |
| CviJI | RGCY | 6 cut(s) | 14, 98, 158, 168, 221, 256 |
| CviKI_1 | RGCY | 6 cut(s) | 14, 98, 158, 168, 221, 256 |
| CviQI | GTAC | 1 cut(s) | 327 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 3 cut(s) | 120, 193, 293 |
| DpnII | GATC | 3 cut(s) | 118, 191, 291 |
| Eam1104I | CTCTTC | 1 cut(s) | 105 |
| EarI | CTCTTC | 1 cut(s) | 105 |
| Ecl136II | GAGCTC | 1 cut(s) | 168 |
| Eco130I | CCWWGG | 1 cut(s) | 46 |
| Eco24I | GRGCYC | 1 cut(s) | 170 |
| Eco31I | GGTCTC | 1 cut(s) | 65 |
| Eco53kI | GAGCTC | 1 cut(s) | 168 |
| EcoICRI | GAGCTC | 1 cut(s) | 168 |
| EcoT14I | CCWWGG | 1 cut(s) | 46 |
| EcoT38I | GRGCYC | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 46 |
| FaeI | CATG | 2 cut(s) | 55, 321 |
| FaiI | YATR | 7 cut(s) | 17, 53, 105, 140, 225, 309, 319 |
| FatI | CATG | 2 cut(s) | 51, 317 |
| FokI | GGATG | 1 cut(s) | 311 |
| FriOI | GRGCYC | 1 cut(s) | 170 |
| FspBI | CTAG | 2 cut(s) | 243, 257 |
| HaeIII | GGCC | 1 cut(s) | 221 |
| HapII | CCGG | 1 cut(s) | 295 |
| HgaI | GACGC | 1 cut(s) | 241 |
| Hin1II | CATG | 2 cut(s) | 55, 321 |
| HinfI | GANTC | 1 cut(s) | 314 |
| HpaII | CCGG | 1 cut(s) | 295 |
| HphI | GGTGA | 2 cut(s) | 35, 100 |
| Hpy188I | TCNGA | 1 cut(s) | 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| HpyCH4III | ACNGT | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| Hsp92II | CATG | 2 cut(s) | 55, 321 |
| Kzo9I | GATC | 3 cut(s) | 118, 191, 291 |
| LguI | GCTCTTC | 1 cut(s) | 105 |
| LpnPI | CCDG | 1 cut(s) | 308 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 243, 257 |
| MalI | GATC | 3 cut(s) | 120, 193, 293 |
| MboI | GATC | 3 cut(s) | 118, 191, 291 |
| MboII | GAAGA | 3 cut(s) | 20, 92, 128 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MhlI | GDGCHC | 1 cut(s) | 170 |
| MnlI | CCTC | 6 cut(s) | 4, 121, 139, 187, 268, 304 |
| MspI | CCGG | 1 cut(s) | 295 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| NciI | CCSGG | 1 cut(s) | 296 |
| NdeII | GATC | 3 cut(s) | 118, 191, 291 |
| NlaIII | CATG | 2 cut(s) | 55, 321 |
| PciSI | GCTCTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 52 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| Psp124BI | GAGCTC | 1 cut(s) | 170 |
| PspPI | GGNCC | 1 cut(s) | 220 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RsaI | GTAC | 1 cut(s) | 328 |
| RsaNI | GTAC | 1 cut(s) | 327 |
| SacI | GAGCTC | 1 cut(s) | 170 |
| SapI | GCTCTTC | 1 cut(s) | 105 |
| Sau3AI | GATC | 3 cut(s) | 118, 191, 291 |
| Sau96I | GGNCC | 1 cut(s) | 220 |
| ScaI | AGTACT | 1 cut(s) | 328 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SduI | GDGCHC | 1 cut(s) | 170 |
| SetI | ASST | 4 cut(s) | 9, 132, 136, 170 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SgeI | CNNG | 9 cut(s) | 59, 64, 215, 251, 255, 269, 296, 307, 308 |
| SsiI | CCGC | 1 cut(s) | 86 |
| SspMI | CTAG | 2 cut(s) | 243, 257 |
| SstI | GAGCTC | 1 cut(s) | 170 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 46 |
| TaaI | ACNGT | 1 cut(s) | 80 |
| TaqII | GACCGA | 1 cut(s) | 89 |
| TatI | WGTACW | 1 cut(s) | 326 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 2 cut(s) | 92, 306 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 52 |
| XspI | CTAG | 2 cut(s) | 243, 257 |
| ZrmI | AGTACT | 1 cut(s) | 328 |