Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 10 - 120 | 6.4e-22 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 90 |
| AccB1I | GGYRCC | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 21 |
| AgsI | TTSAA | 2 cut(s) | 266, 398 |
| AjnI | CCWGG | 2 cut(s) | 7, 159 |
| AluBI | AGCT | 1 cut(s) | 401 |
| AluI | AGCT | 1 cut(s) | 401 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 410 |
| AspS9I | GGNCC | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 2 cut(s) | 77, 299 |
| AvaII | GGWCC | 1 cut(s) | 11 |
| BaeGI | GKGCMC | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 99 |
| BciT130I | CCWGG | 2 cut(s) | 9, 161 |
| BfmI | CTRYAG | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 2 cut(s) | 9, 161 |
| Bme18I | GGWCC | 1 cut(s) | 11 |
| BmgT120I | GGNCC | 1 cut(s) | 11 |
| BmiI | GGNNCC | 2 cut(s) | 13, 96 |
| BmrFI | CCNGG | 2 cut(s) | 9, 161 |
| BmsI | GCATC | 2 cut(s) | 13, 409 |
| BpiI | GAAGAC | 1 cut(s) | 99 |
| BpmI | CTGGAG | 1 cut(s) | 387 |
| BsaAI | YACGTR | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 1 cut(s) | 438 |
| BsaJI | CCNNGG | 1 cut(s) | 20 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 21 |
| Bse8I | GATNNNNATC | 1 cut(s) | 438 |
| BseBI | CCWGG | 2 cut(s) | 9, 161 |
| BseDI | CCNNGG | 1 cut(s) | 20 |
| BseGI | GGATG | 4 cut(s) | 4, 156, 223, 424 |
| BseJI | GATNNNNATC | 1 cut(s) | 438 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseSI | GKGCMC | 1 cut(s) | 99 |
| BshNI | GGYRCC | 1 cut(s) | 94 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BsmI | GAATGC | 1 cut(s) | 295 |
| Bsp1286I | GDGCHC | 1 cut(s) | 99 |
| Bsp143I | GATC | 1 cut(s) | 153 |
| Bsp19I | CCATGG | 1 cut(s) | 20 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspLI | GGNNCC | 2 cut(s) | 13, 96 |
| BspT107I | GGYRCC | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 20 |
| BssMI | GATC | 1 cut(s) | 153 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst2UI | CCWGG | 2 cut(s) | 9, 161 |
| BstBAI | YACGTR | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 3 cut(s) | 30, 34, 132 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstDSI | CCRYGG | 1 cut(s) | 20 |
| BstF5I | GGATG | 4 cut(s) | 4, 156, 223, 424 |
| BstKTI | GATC | 1 cut(s) | 156 |
| BstMBI | GATC | 1 cut(s) | 153 |
| BstNI | CCWGG | 2 cut(s) | 9, 161 |
| BstNSI | RCATGY | 1 cut(s) | 32 |
| BstSCI | CCNGG | 2 cut(s) | 7, 159 |
| BstSFI | CTRYAG | 1 cut(s) | 300 |
| BstSLI | GKGCMC | 1 cut(s) | 99 |
| BstSNI | TACGTA | 1 cut(s) | 53 |
| BstV2I | GAAGAC | 1 cut(s) | 99 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 167 |
| BtgI | CCRYGG | 1 cut(s) | 20 |
| BtsCI | GGATG | 4 cut(s) | 4, 156, 223, 424 |
| Cac8I | GCNNGC | 3 cut(s) | 30, 34, 132 |
| CaiI | CAGNNNCTG | 1 cut(s) | 410 |
| Cfr13I | GGNCC | 1 cut(s) | 11 |
| CviAII | CATG | 3 cut(s) | 21, 29, 335 |
| CviJI | RGCY | 2 cut(s) | 209, 401 |
| CviKI_1 | RGCY | 2 cut(s) | 209, 401 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 1 cut(s) | 155 |
| DpnII | GATC | 1 cut(s) | 153 |
| Eco105I | TACGTA | 1 cut(s) | 53 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 11 |
| EcoRII | CCWGG | 2 cut(s) | 7, 159 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaeI | CATG | 3 cut(s) | 24, 32, 338 |
| FatI | CATG | 3 cut(s) | 20, 28, 334 |
| FauNDI | CATATG | 1 cut(s) | 381 |
| FokI | GGATG | 3 cut(s) | 143, 230, 431 |
| GsuI | CTGGAG | 1 cut(s) | 387 |
| Hin1II | CATG | 3 cut(s) | 24, 32, 338 |
| HinfI | GANTC | 2 cut(s) | 368, 407 |
| HphI | GGTGA | 2 cut(s) | 77, 299 |
| Hpy188I | TCNGA | 1 cut(s) | 373 |
| Hpy188III | TCNNGA | 2 cut(s) | 404, 416 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4IV | ACGT | 1 cut(s) | 52 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 28, 32, 295 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| HpySE526I | ACGT | 1 cut(s) | 52 |
| Hsp92II | CATG | 3 cut(s) | 24, 32, 338 |
| Kzo9I | GATC | 1 cut(s) | 153 |
| LmnI | GCTCC | 1 cut(s) | 406 |
| LpnPI | CCDG | 6 cut(s) | 18, 21, 146, 173, 401, 417 |
| LweI | GCATC | 2 cut(s) | 13, 409 |
| MaeII | ACGT | 1 cut(s) | 52 |
| MaeIII | GTNAC | 1 cut(s) | 220 |
| MalI | GATC | 1 cut(s) | 155 |
| MboI | GATC | 1 cut(s) | 153 |
| MboII | GAAGA | 2 cut(s) | 99, 278 |
| MhlI | GDGCHC | 1 cut(s) | 99 |
| MluCI | AATT | 2 cut(s) | 270, 290 |
| MlyI | GAGTC | 1 cut(s) | 416 |
| MmeI | TCCRAC | 1 cut(s) | 129 |
| MnlI | CCTC | 3 cut(s) | 26, 35, 199 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 5 cut(s) | 138, 188, 213, 273, 454 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspR9I | CCNGG | 2 cut(s) | 9, 161 |
| Mva1269I | GAATGC | 1 cut(s) | 295 |
| MvaI | CCWGG | 2 cut(s) | 9, 161 |
| NcoI | CCATGG | 1 cut(s) | 20 |
| NdeI | CATATG | 1 cut(s) | 381 |
| NdeII | GATC | 1 cut(s) | 153 |
| NlaIII | CATG | 3 cut(s) | 24, 32, 338 |
| NlaIV | GGNNCC | 2 cut(s) | 13, 96 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 32 |
| PaeI | GCATGC | 1 cut(s) | 32 |
| PctI | GAATGC | 1 cut(s) | 295 |
| PfeI | GAWTC | 1 cut(s) | 368 |
| PleI | GAGTC | 1 cut(s) | 415 |
| PpsI | GAGTC | 1 cut(s) | 415 |
| Ppu21I | YACGTR | 1 cut(s) | 53 |
| PsiI | TTATAA | 1 cut(s) | 90 |
| Psp6I | CCWGG | 2 cut(s) | 7, 159 |
| PspGI | CCWGG | 2 cut(s) | 7, 159 |
| PspN4I | GGNNCC | 2 cut(s) | 13, 96 |
| PspPI | GGNCC | 1 cut(s) | 11 |
| PstNI | CAGNNNCTG | 1 cut(s) | 410 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SaqAI | TTAA | 5 cut(s) | 138, 188, 213, 273, 454 |
| Sau3AI | GATC | 1 cut(s) | 153 |
| Sau96I | GGNCC | 1 cut(s) | 11 |
| SchI | GAGTC | 1 cut(s) | 416 |
| ScrFI | CCNGG | 2 cut(s) | 9, 161 |
| SduI | GDGCHC | 1 cut(s) | 99 |
| SetI | ASST | 6 cut(s) | 46, 55, 96, 289, 307, 403 |
| SfaNI | GCATC | 2 cut(s) | 13, 409 |
| SfcI | CTRYAG | 1 cut(s) | 300 |
| SinI | GGWCC | 1 cut(s) | 11 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SnaBI | TACGTA | 1 cut(s) | 53 |
| SphI | GCATGC | 1 cut(s) | 32 |
| Sse9I | AATT | 2 cut(s) | 270, 290 |
| StyD4I | CCNGG | 2 cut(s) | 7, 159 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaiI | ACGT | 1 cut(s) | 55 |
| TasI | AATT | 2 cut(s) | 270, 290 |
| TfiI | GAWTC | 1 cut(s) | 368 |
| Tru1I | TTAA | 5 cut(s) | 138, 188, 213, 273, 454 |
| Tru9I | TTAA | 5 cut(s) | 138, 188, 213, 273, 454 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 2 cut(s) | 299, 368 |
| VpaK11BI | GGWCC | 1 cut(s) | 11 |
| XceI | RCATGY | 1 cut(s) | 32 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |