Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 647, 728 |
| AccII | CGCG | 3 cut(s) | 233, 254, 456 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AciI | CCGC | 4 cut(s) | 125, 128, 231, 651 |
| AclWI | GGATC | 2 cut(s) | 182, 364 |
| AfaI | GTAC | 1 cut(s) | 92 |
| AgsI | TTSAA | 4 cut(s) | 35, 203, 482, 493 |
| AjnI | CCWGG | 3 cut(s) | 135, 313, 373 |
| AluBI | AGCT | 2 cut(s) | 68, 515 |
| AluI | AGCT | 2 cut(s) | 68, 515 |
| AlwI | GGATC | 2 cut(s) | 182, 364 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| AoxI | GGCC | 3 cut(s) | 316, 376, 402 |
| ApeKI | GCWGC | 5 cut(s) | 104, 182, 266, 353, 611 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AspA2I | CCTAGG | 1 cut(s) | 388 |
| AspLEI | GCGC | 1 cut(s) | 458 |
| AspS9I | GGNCC | 2 cut(s) | 403, 604 |
| AsuC2I | CCSGG | 2 cut(s) | 423, 625 |
| AsuHPI | GGTGA | 4 cut(s) | 313, 358, 440, 560 |
| AvaII | GGWCC | 1 cut(s) | 604 |
| AvrII | CCTAGG | 1 cut(s) | 388 |
| BanI | GGYRCC | 2 cut(s) | 647, 728 |
| BbvI | GCAGC | 5 cut(s) | 116, 169, 278, 365, 598 |
| BceAI | ACGGC | 1 cut(s) | 599 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 93, 127 |
| BciT130I | CCWGG | 3 cut(s) | 137, 315, 375 |
| BciVI | GTATCC | 1 cut(s) | 15 |
| BcnI | CCSGG | 2 cut(s) | 423, 625 |
| BfaI | CTAG | 5 cut(s) | 65, 69, 305, 389, 775 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BfuI | GTATCC | 1 cut(s) | 15 |
| BisI | GCNGC | 7 cut(s) | 105, 126, 129, 183, 267, 354, 612 |
| BlnI | CCTAGG | 1 cut(s) | 388 |
| BlsI | GCNGC | 7 cut(s) | 106, 127, 130, 184, 268, 355, 613 |
| Bme1390I | CCNGG | 5 cut(s) | 137, 315, 375, 423, 625 |
| Bme18I | GGWCC | 1 cut(s) | 604 |
| BmgT120I | GGNCC | 2 cut(s) | 403, 604 |
| BmiI | GGNNCC | 3 cut(s) | 606, 649, 730 |
| BmrFI | CCNGG | 5 cut(s) | 137, 315, 375, 423, 625 |
| BmsI | GCATC | 1 cut(s) | 438 |
| BoxI | GACNNNNGTC | 1 cut(s) | 239 |
| BpmI | CTGGAG | 1 cut(s) | 672 |
| BpuMI | CCSGG | 2 cut(s) | 423, 625 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 373, 388 |
| BsaWI | WCCGGW | 1 cut(s) | 190 |
| Bse1I | ACTGG | 1 cut(s) | 689 |
| Bse3DI | GCAATG | 1 cut(s) | 657 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 3 cut(s) | 137, 315, 375 |
| BseDI | CCNNGG | 3 cut(s) | 120, 373, 388 |
| BseMI | GCAATG | 1 cut(s) | 657 |
| BseMII | CTCAG | 1 cut(s) | 61 |
| BseNI | ACTGG | 1 cut(s) | 689 |
| BseXI | GCAGC | 5 cut(s) | 116, 169, 278, 365, 598 |
| Bsh1236I | CGCG | 3 cut(s) | 233, 254, 456 |
| BshFI | GGCC | 3 cut(s) | 318, 378, 404 |
| BshNI | GGYRCC | 2 cut(s) | 647, 728 |
| BsiSI | CCGG | 4 cut(s) | 191, 300, 423, 624 |
| BslFI | GGGAC | 1 cut(s) | 590 |
| BsmFI | GGGAC | 1 cut(s) | 590 |
| BsnI | GGCC | 3 cut(s) | 318, 378, 404 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp143I | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| Bsp19I | CCATGG | 1 cut(s) | 120 |
| BspACI | CCGC | 4 cut(s) | 125, 128, 231, 651 |
| BspANI | GGCC | 3 cut(s) | 318, 378, 404 |
| BspCNI | CTCAG | 1 cut(s) | 60 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspFNI | CGCG | 3 cut(s) | 233, 254, 456 |
| BspLI | GGNNCC | 3 cut(s) | 606, 649, 730 |
| BspMAI | CTGCAG | 1 cut(s) | 355 |
| BspPI | GGATC | 2 cut(s) | 182, 364 |
| BspT107I | GGYRCC | 2 cut(s) | 647, 728 |
| BsrDI | GCAATG | 1 cut(s) | 657 |
| BsrI | ACTGG | 1 cut(s) | 689 |
| BssECI | CCNNGG | 3 cut(s) | 120, 373, 388 |
| BssMI | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| BssT1I | CCWWGG | 2 cut(s) | 120, 388 |
| Bst2UI | CCWGG | 3 cut(s) | 137, 315, 375 |
| Bst4CI | ACNGT | 2 cut(s) | 30, 639 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 2 cut(s) | 256, 762 |
| BstDEI | CTNAG | 2 cut(s) | 47, 711 |
| BstDSI | CCRYGG | 1 cut(s) | 120 |
| BstFNI | CGCG | 3 cut(s) | 233, 254, 456 |
| BstHHI | GCGC | 1 cut(s) | 458 |
| BstKTI | GATC | 5 cut(s) | 190, 372, 621, 741, 750 |
| BstMBI | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 113, 122, 137, 272, 305, 620, 659 |
| BstNI | CCWGG | 3 cut(s) | 137, 315, 375 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 239 |
| BstSCI | CCNGG | 5 cut(s) | 135, 313, 373, 421, 623 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstUI | CGCG | 3 cut(s) | 233, 254, 456 |
| BstV1I | GCAGC | 5 cut(s) | 116, 169, 278, 365, 598 |
| BstX2I | RGATCY | 1 cut(s) | 369 |
| BstYI | RGATCY | 1 cut(s) | 369 |
| BsuI | GTATCC | 1 cut(s) | 15 |
| BsuRI | GGCC | 3 cut(s) | 318, 378, 404 |
| BtgI | CCRYGG | 1 cut(s) | 120 |
| BtsI | GCAGTG | 1 cut(s) | 147 |
| BtsIMutI | CAGTG | 3 cut(s) | 147, 459, 696 |
| Cac8I | GCNNGC | 2 cut(s) | 256, 762 |
| CfoI | GCGC | 1 cut(s) | 458 |
| Cfr13I | GGNCC | 2 cut(s) | 403, 604 |
| CseI | GACGC | 1 cut(s) | 272 |
| Csp6I | GTAC | 1 cut(s) | 91 |
| CviAII | CATG | 1 cut(s) | 121 |
| CviQI | GTAC | 1 cut(s) | 91 |
| DdeI | CTNAG | 2 cut(s) | 47, 711 |
| DpnI | GATC | 5 cut(s) | 189, 371, 620, 740, 749 |
| DpnII | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| Eco130I | CCWWGG | 2 cut(s) | 120, 388 |
| Eco147I | AGGCCT | 2 cut(s) | 318, 378 |
| Eco47I | GGWCC | 1 cut(s) | 604 |
| EcoO109I | RGGNCCY | 1 cut(s) | 604 |
| EcoRII | CCWGG | 3 cut(s) | 135, 313, 373 |
| EcoT14I | CCWWGG | 2 cut(s) | 120, 388 |
| ErhI | CCWWGG | 2 cut(s) | 120, 388 |
| FaeI | CATG | 1 cut(s) | 124 |
| FaiI | YATR | 6 cut(s) | 24, 122, 164, 417, 474, 506 |
| FaqI | GGGAC | 1 cut(s) | 590 |
| FatI | CATG | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 7 cut(s) | 105, 126, 129, 183, 267, 354, 612 |
| Fsp4HI | GCNGC | 7 cut(s) | 105, 126, 129, 183, 267, 354, 612 |
| FspBI | CTAG | 5 cut(s) | 65, 69, 305, 389, 775 |
| GlaI | GCGC | 1 cut(s) | 457 |
| GluI | GCNGC | 7 cut(s) | 105, 126, 129, 183, 267, 354, 612 |
| GsuI | CTGGAG | 1 cut(s) | 672 |
| HaeIII | GGCC | 3 cut(s) | 318, 378, 404 |
| HapII | CCGG | 4 cut(s) | 191, 300, 423, 624 |
| HgaI | GACGC | 1 cut(s) | 272 |
| HhaI | GCGC | 1 cut(s) | 458 |
| Hin1II | CATG | 1 cut(s) | 124 |
| Hin6I | GCGC | 1 cut(s) | 456 |
| HinP1I | GCGC | 1 cut(s) | 456 |
| HincII | GTYRAC | 1 cut(s) | 708 |
| HindII | GTYRAC | 1 cut(s) | 708 |
| HpaII | CCGG | 4 cut(s) | 191, 300, 423, 624 |
| HphI | GGTGA | 4 cut(s) | 313, 358, 440, 560 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 708 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 203, 364, 479, 586, 742 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 708 |
| Hpy99I | CGWCG | 1 cut(s) | 238 |
| HpyAV | CCTTC | 2 cut(s) | 19, 476 |
| HpyCH4III | ACNGT | 2 cut(s) | 30, 639 |
| HpyCH4V | TGCA | 7 cut(s) | 218, 258, 275, 353, 488, 643, 764 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 113, 122, 137, 272, 305, 620, 659 |
| HpyF3I | CTNAG | 2 cut(s) | 47, 711 |
| Hsp92II | CATG | 1 cut(s) | 124 |
| HspAI | GCGC | 1 cut(s) | 456 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| Kzo9I | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| LmnI | GCTCC | 1 cut(s) | 424 |
| Lsp1109I | GCAGC | 5 cut(s) | 116, 169, 278, 365, 598 |
| LweI | GCATC | 1 cut(s) | 438 |
| MaeI | CTAG | 5 cut(s) | 65, 69, 305, 389, 775 |
| MaeIII | GTNAC | 1 cut(s) | 346 |
| MalI | GATC | 5 cut(s) | 189, 371, 620, 740, 749 |
| MboI | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| MboII | GAAGA | 4 cut(s) | 283, 379, 601, 757 |
| MflI | RGATCY | 1 cut(s) | 369 |
| MnlI | CCTC | 7 cut(s) | 277, 329, 389, 419, 450, 674, 696 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MseI | TTAA | 1 cut(s) | 630 |
| MspI | CCGG | 4 cut(s) | 191, 300, 423, 624 |
| MspR9I | CCNGG | 5 cut(s) | 137, 315, 375, 423, 625 |
| MvaI | CCWGG | 3 cut(s) | 137, 315, 375 |
| MvnI | CGCG | 3 cut(s) | 233, 254, 456 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 113, 122, 137, 272, 305, 620, 659 |
| NciI | CCSGG | 2 cut(s) | 423, 625 |
| NcoI | CCATGG | 1 cut(s) | 120 |
| NdeII | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| NlaIII | CATG | 1 cut(s) | 124 |
| NlaIV | GGNNCC | 3 cut(s) | 606, 649, 730 |
| NmuCI | GTSAC | 1 cut(s) | 346 |
| PceI | AGGCCT | 2 cut(s) | 318, 378 |
| PfoI | TCCNGGA | 1 cut(s) | 421 |
| PkrI | GCNGC | 7 cut(s) | 106, 127, 130, 184, 268, 355, 613 |
| PpuMI | RGGWCCY | 1 cut(s) | 604 |
| PshAI | GACNNNNGTC | 1 cut(s) | 239 |
| Psp5II | RGGWCCY | 1 cut(s) | 604 |
| Psp6I | CCWGG | 3 cut(s) | 135, 313, 373 |
| PspGI | CCWGG | 3 cut(s) | 135, 313, 373 |
| PspN4I | GGNNCC | 3 cut(s) | 606, 649, 730 |
| PspPI | GGNCC | 2 cut(s) | 403, 604 |
| PspPPI | RGGWCCY | 1 cut(s) | 604 |
| PstI | CTGCAG | 1 cut(s) | 355 |
| PsuI | RGATCY | 1 cut(s) | 369 |
| RsaI | GTAC | 1 cut(s) | 92 |
| RsaNI | GTAC | 1 cut(s) | 91 |
| SaqAI | TTAA | 1 cut(s) | 630 |
| SatI | GCNGC | 7 cut(s) | 105, 126, 129, 183, 267, 354, 612 |
| Sau3AI | GATC | 5 cut(s) | 187, 369, 618, 738, 747 |
| Sau96I | GGNCC | 2 cut(s) | 403, 604 |
| ScrFI | CCNGG | 5 cut(s) | 137, 315, 375, 423, 625 |
| SetI | ASST | 9 cut(s) | 70, 92, 335, 442, 487, 517, 550, 606, 688 |
| SfaNI | GCATC | 1 cut(s) | 438 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SinI | GGWCC | 1 cut(s) | 604 |
| SseBI | AGGCCT | 2 cut(s) | 318, 378 |
| SsiI | CCGC | 4 cut(s) | 125, 128, 231, 651 |
| SspMI | CTAG | 5 cut(s) | 65, 69, 305, 389, 775 |
| StuI | AGGCCT | 2 cut(s) | 318, 378 |
| StyD4I | CCNGG | 5 cut(s) | 135, 313, 373, 421, 623 |
| StyI | CCWWGG | 2 cut(s) | 120, 388 |
| TaaI | ACNGT | 2 cut(s) | 30, 639 |
| TaqI | TCGA | 1 cut(s) | 741 |
| TauI | GCSGC | 2 cut(s) | 128, 131 |
| Tru1I | TTAA | 1 cut(s) | 630 |
| Tru9I | TTAA | 1 cut(s) | 630 |
| TscAI | CASTG | 3 cut(s) | 147, 466, 696 |
| TseFI | GTSAC | 1 cut(s) | 346 |
| TseI | GCWGC | 5 cut(s) | 104, 182, 266, 353, 611 |
| Tsp45I | GTSAC | 1 cut(s) | 346 |
| TspDTI | ATGAA | 3 cut(s) | 11, 493, 569 |
| TspRI | CASTG | 3 cut(s) | 147, 466, 696 |
| VpaK11BI | GGWCC | 1 cut(s) | 604 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 593, 688 |
| XmaJI | CCTAGG | 1 cut(s) | 388 |
| XspI | CTAG | 5 cut(s) | 65, 69, 305, 389, 775 |