Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 285 |
| AccIII | TCCGGA | 1 cut(s) | 439 |
| AciI | CCGC | 1 cut(s) | 356 |
| AclWI | GGATC | 1 cut(s) | 624 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 2 cut(s) | 247, 388 |
| AfaI | GTAC | 4 cut(s) | 295, 429, 476, 715 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 81, 285 |
| AgsI | TTSAA | 2 cut(s) | 35, 652 |
| AjnI | CCWGG | 1 cut(s) | 523 |
| AluBI | AGCT | 9 cut(s) | 44, 200, 206, 569, 578, 660, 701, 764, 776 |
| AluI | AGCT | 9 cut(s) | 44, 200, 206, 569, 578, 660, 701, 764, 776 |
| Alw26I | GTCTC | 3 cut(s) | 19, 530, 629 |
| AlwI | GGATC | 1 cut(s) | 624 |
| Aor13HI | TCCGGA | 1 cut(s) | 439 |
| AoxI | GGCC | 2 cut(s) | 126, 526 |
| ApeKI | GCWGC | 3 cut(s) | 569, 701, 773 |
| ApoI | RAATTY | 2 cut(s) | 247, 388 |
| AseI | ATTAAT | 1 cut(s) | 495 |
| AsuNHI | GCTAGC | 1 cut(s) | 578 |
| BalI | TGGCCA | 1 cut(s) | 128 |
| BbsI | GAAGAC | 2 cut(s) | 98, 332 |
| BbvCI | CCTCAGC | 1 cut(s) | 592 |
| BbvI | GCAGC | 3 cut(s) | 556, 688, 785 |
| BccI | CCATC | 1 cut(s) | 134 |
| BciT130I | CCWGG | 1 cut(s) | 525 |
| BcoDI | GTCTC | 3 cut(s) | 19, 530, 629 |
| BfaI | CTAG | 6 cut(s) | 62, 407, 566, 579, 750, 758 |
| BisI | GCNGC | 3 cut(s) | 570, 702, 774 |
| BlsI | GCNGC | 3 cut(s) | 571, 703, 775 |
| BmcAI | AGTACT | 2 cut(s) | 476, 715 |
| Bme1390I | CCNGG | 1 cut(s) | 525 |
| BmrFI | CCNGG | 1 cut(s) | 525 |
| BmtI | GCTAGC | 1 cut(s) | 582 |
| BpiI | GAAGAC | 2 cut(s) | 98, 332 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 31 |
| Bpu10I | CCTNAGC | 1 cut(s) | 592 |
| BpuEI | CTTGAG | 1 cut(s) | 186 |
| BsaI | GGTCTC | 1 cut(s) | 19 |
| BsaJI | CCNNGG | 2 cut(s) | 350, 597 |
| BsaWI | WCCGGW | 1 cut(s) | 439 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 81, 285 |
| Bse1I | ACTGG | 1 cut(s) | 235 |
| Bse3DI | GCAATG | 2 cut(s) | 408, 450 |
| BseAI | TCCGGA | 1 cut(s) | 439 |
| BseBI | CCWGG | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 350, 597 |
| BseGI | GGATG | 1 cut(s) | 436 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 81, 285 |
| BseMI | GCAATG | 2 cut(s) | 408, 450 |
| BseMII | CTCAG | 2 cut(s) | 606, 611 |
| BseNI | ACTGG | 1 cut(s) | 235 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 3 cut(s) | 556, 688, 785 |
| BsgI | GTGCAG | 2 cut(s) | 189, 687 |
| BshFI | GGCC | 2 cut(s) | 128, 528 |
| BsiSI | CCGG | 1 cut(s) | 440 |
| BslFI | GGGAC | 1 cut(s) | 615 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 81, 285 |
| BsmAI | GTCTC | 3 cut(s) | 19, 530, 629 |
| BsmFI | GGGAC | 1 cut(s) | 615 |
| BsmI | GAATGC | 1 cut(s) | 493 |
| BsnI | GGCC | 2 cut(s) | 128, 528 |
| Bso31I | GGTCTC | 1 cut(s) | 19 |
| Bsp13I | TCCGGA | 1 cut(s) | 439 |
| Bsp143I | GATC | 1 cut(s) | 616 |
| BspACI | CCGC | 1 cut(s) | 356 |
| BspANI | GGCC | 2 cut(s) | 128, 528 |
| BspCNI | CTCAG | 2 cut(s) | 605, 612 |
| BspEI | TCCGGA | 1 cut(s) | 439 |
| BspOI | GCTAGC | 1 cut(s) | 582 |
| BspPI | GGATC | 1 cut(s) | 624 |
| BspTNI | GGTCTC | 1 cut(s) | 19 |
| BsrDI | GCAATG | 2 cut(s) | 408, 450 |
| BsrI | ACTGG | 1 cut(s) | 235 |
| BssECI | CCNNGG | 2 cut(s) | 350, 597 |
| BssMI | GATC | 1 cut(s) | 616 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 597 |
| Bst2UI | CCWGG | 1 cut(s) | 525 |
| Bst6I | CTCTTC | 1 cut(s) | 632 |
| BstC8I | GCNNGC | 2 cut(s) | 336, 580 |
| BstDEI | CTNAG | 2 cut(s) | 592, 620 |
| BstF5I | GGATG | 1 cut(s) | 436 |
| BstKTI | GATC | 1 cut(s) | 619 |
| BstMAI | GTCTC | 3 cut(s) | 19, 530, 629 |
| BstMBI | GATC | 1 cut(s) | 616 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 575, 770 |
| BstNI | CCWGG | 1 cut(s) | 525 |
| BstNSI | RCATGY | 1 cut(s) | 338 |
| BstSCI | CCNGG | 1 cut(s) | 523 |
| BstV1I | GCAGC | 3 cut(s) | 556, 688, 785 |
| BstV2I | GAAGAC | 2 cut(s) | 98, 332 |
| BstX2I | RGATCY | 1 cut(s) | 616 |
| BstYI | RGATCY | 1 cut(s) | 616 |
| BsuRI | GGCC | 2 cut(s) | 128, 528 |
| BtsCI | GGATG | 1 cut(s) | 436 |
| Cac8I | GCNNGC | 2 cut(s) | 336, 580 |
| CseI | GACGC | 1 cut(s) | 551 |
| Csp6I | GTAC | 4 cut(s) | 294, 428, 475, 714 |
| CviAII | CATG | 5 cut(s) | 50, 335, 420, 707, 725 |
| CviQI | GTAC | 4 cut(s) | 294, 428, 475, 714 |
| DdeI | CTNAG | 2 cut(s) | 592, 620 |
| DpnI | GATC | 1 cut(s) | 618 |
| DpnII | GATC | 1 cut(s) | 616 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 632 |
| EarI | CTCTTC | 1 cut(s) | 632 |
| EciI | GGCGGA | 1 cut(s) | 371 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 597 |
| Eco147I | AGGCCT | 1 cut(s) | 528 |
| Eco31I | GGTCTC | 1 cut(s) | 19 |
| EcoRII | CCWGG | 1 cut(s) | 523 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 597 |
| ErhI | CCWWGG | 2 cut(s) | 350, 597 |
| FaeI | CATG | 5 cut(s) | 53, 338, 423, 710, 728 |
| FaqI | GGGAC | 1 cut(s) | 615 |
| FatI | CATG | 5 cut(s) | 49, 334, 419, 706, 724 |
| Fnu4HI | GCNGC | 3 cut(s) | 570, 702, 774 |
| FokI | GGATG | 1 cut(s) | 423 |
| Fsp4HI | GCNGC | 3 cut(s) | 570, 702, 774 |
| FspBI | CTAG | 6 cut(s) | 62, 407, 566, 579, 750, 758 |
| GluI | GCNGC | 3 cut(s) | 570, 702, 774 |
| HaeIII | GGCC | 2 cut(s) | 128, 528 |
| HapII | CCGG | 1 cut(s) | 440 |
| HgaI | GACGC | 1 cut(s) | 551 |
| Hin1II | CATG | 5 cut(s) | 53, 338, 423, 710, 728 |
| HincII | GTYRAC | 1 cut(s) | 563 |
| HindII | GTYRAC | 1 cut(s) | 563 |
| HindIII | AAGCTT | 1 cut(s) | 204 |
| HinfI | GANTC | 5 cut(s) | 187, 379, 443, 622, 635 |
| HpaII | CCGG | 1 cut(s) | 440 |
| Hpy166II | GTNNAC | 1 cut(s) | 563 |
| Hpy188I | TCNGA | 2 cut(s) | 378, 621 |
| Hpy188III | TCNNGA | 3 cut(s) | 302, 440, 482 |
| Hpy8I | GTNNAC | 1 cut(s) | 563 |
| HpyAV | CCTTC | 4 cut(s) | 169, 222, 353, 418 |
| HpyCH4IV | ACGT | 1 cut(s) | 559 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 575, 770 |
| HpyF3I | CTNAG | 2 cut(s) | 592, 620 |
| HpySE526I | ACGT | 1 cut(s) | 559 |
| Hsp92II | CATG | 5 cut(s) | 53, 338, 423, 710, 728 |
| Kpn2I | TCCGGA | 1 cut(s) | 439 |
| Kzo9I | GATC | 1 cut(s) | 616 |
| Lsp1109I | GCAGC | 3 cut(s) | 556, 688, 785 |
| MaeI | CTAG | 6 cut(s) | 62, 407, 566, 579, 750, 758 |
| MaeII | ACGT | 1 cut(s) | 559 |
| MaeIII | GTNAC | 1 cut(s) | 685 |
| MalI | GATC | 1 cut(s) | 618 |
| MboI | GATC | 1 cut(s) | 616 |
| MboII | GAAGA | 7 cut(s) | 100, 103, 145, 322, 337, 425, 619 |
| MfeI | CAATTG | 2 cut(s) | 504, 786 |
| MflI | RGATCY | 1 cut(s) | 616 |
| MlsI | TGGCCA | 1 cut(s) | 128 |
| MluCI | AATT | 7 cut(s) | 247, 388, 394, 492, 496, 504, 786 |
| MluNI | TGGCCA | 1 cut(s) | 128 |
| MlyI | GAGTC | 3 cut(s) | 388, 437, 631 |
| MnlI | CCTC | 6 cut(s) | 4, 78, 250, 544, 601, 607 |
| Mox20I | TGGCCA | 1 cut(s) | 128 |
| MroI | TCCGGA | 1 cut(s) | 439 |
| MscI | TGGCCA | 1 cut(s) | 128 |
| MseI | TTAA | 3 cut(s) | 114, 393, 495 |
| Msp20I | TGGCCA | 1 cut(s) | 128 |
| MspI | CCGG | 1 cut(s) | 440 |
| MspR9I | CCNGG | 1 cut(s) | 525 |
| MunI | CAATTG | 2 cut(s) | 504, 786 |
| Mva1269I | GAATGC | 1 cut(s) | 493 |
| MvaI | CCWGG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 575, 770 |
| NdeII | GATC | 1 cut(s) | 616 |
| NheI | GCTAGC | 1 cut(s) | 578 |
| NlaIII | CATG | 5 cut(s) | 53, 338, 423, 710, 728 |
| NspI | RCATGY | 1 cut(s) | 338 |
| PaeI | GCATGC | 1 cut(s) | 338 |
| PceI | AGGCCT | 1 cut(s) | 528 |
| PctI | GAATGC | 1 cut(s) | 493 |
| PfeI | GAWTC | 2 cut(s) | 187, 635 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 285 |
| PkrI | GCNGC | 3 cut(s) | 571, 703, 775 |
| PleI | GAGTC | 3 cut(s) | 387, 437, 630 |
| PpsI | GAGTC | 3 cut(s) | 387, 437, 630 |
| PshBI | ATTAAT | 1 cut(s) | 495 |
| Psp6I | CCWGG | 1 cut(s) | 523 |
| PspGI | CCWGG | 1 cut(s) | 523 |
| PsuI | RGATCY | 1 cut(s) | 616 |
| RsaI | GTAC | 4 cut(s) | 295, 429, 476, 715 |
| RsaNI | GTAC | 4 cut(s) | 294, 428, 475, 714 |
| SaqAI | TTAA | 3 cut(s) | 114, 393, 495 |
| SatI | GCNGC | 3 cut(s) | 570, 702, 774 |
| Sau3AI | GATC | 1 cut(s) | 616 |
| ScaI | AGTACT | 2 cut(s) | 476, 715 |
| SchI | GAGTC | 3 cut(s) | 388, 437, 631 |
| ScrFI | CCNGG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 1 cut(s) | 201 |
| SmoI | CTYRAG | 1 cut(s) | 201 |
| SphI | GCATGC | 1 cut(s) | 338 |
| Sse9I | AATT | 7 cut(s) | 247, 388, 394, 492, 496, 504, 786 |
| SseBI | AGGCCT | 1 cut(s) | 528 |
| SsiI | CCGC | 1 cut(s) | 356 |
| SspMI | CTAG | 6 cut(s) | 62, 407, 566, 579, 750, 758 |
| StuI | AGGCCT | 1 cut(s) | 528 |
| StyD4I | CCNGG | 1 cut(s) | 523 |
| StyI | CCWWGG | 2 cut(s) | 350, 597 |
| TaiI | ACGT | 1 cut(s) | 562 |
| TasI | AATT | 7 cut(s) | 247, 388, 394, 492, 496, 504, 786 |
| TatI | WGTACW | 2 cut(s) | 474, 713 |
| TfiI | GAWTC | 2 cut(s) | 187, 635 |
| Tru1I | TTAA | 3 cut(s) | 114, 393, 495 |
| Tru9I | TTAA | 3 cut(s) | 114, 393, 495 |
| TseI | GCWGC | 3 cut(s) | 569, 701, 773 |
| TspDTI | ATGAA | 2 cut(s) | 66, 425 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 285 |
| VspI | ATTAAT | 1 cut(s) | 495 |
| XapI | RAATTY | 2 cut(s) | 247, 388 |
| XceI | RCATGY | 1 cut(s) | 338 |
| XspI | CTAG | 6 cut(s) | 62, 407, 566, 579, 750, 758 |
| ZrmI | AGTACT | 2 cut(s) | 476, 715 |