Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 562, 619, 702 |
| Acc36I | ACCTGC | 3 cut(s) | 562, 619, 702 |
| AccB1I | GGYRCC | 1 cut(s) | 761 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 37 |
| AccI | GTMKAC | 2 cut(s) | 729, 777 |
| AccII | CGCG | 1 cut(s) | 448 |
| AciI | CCGC | 4 cut(s) | 446, 448, 487, 654 |
| AcyI | GRCGYC | 1 cut(s) | 762 |
| AfaI | GTAC | 2 cut(s) | 307, 313 |
| AgeI | ACCGGT | 2 cut(s) | 383, 641 |
| AgsI | TTSAA | 3 cut(s) | 56, 156, 794 |
| AhlI | ACTAGT | 1 cut(s) | 308 |
| AjnI | CCWGG | 2 cut(s) | 279, 668 |
| AluBI | AGCT | 1 cut(s) | 143 |
| AluI | AGCT | 1 cut(s) | 143 |
| Alw26I | GTCTC | 5 cut(s) | 87, 463, 551, 691, 888 |
| Ama87I | CYCGRG | 1 cut(s) | 315 |
| AoxI | GGCC | 2 cut(s) | 371, 713 |
| ApeKI | GCWGC | 4 cut(s) | 557, 589, 614, 697 |
| AsiGI | ACCGGT | 2 cut(s) | 383, 641 |
| AspLEI | GCGC | 2 cut(s) | 632, 764 |
| AspS9I | GGNCC | 2 cut(s) | 644, 672 |
| AsuHPI | GGTGA | 8 cut(s) | 20, 85, 398, 439, 543, 600, 614, 683 |
| AsuNHI | GCTAGC | 1 cut(s) | 754 |
| AvaI | CYCGRG | 1 cut(s) | 315 |
| AvaII | GGWCC | 2 cut(s) | 644, 672 |
| BanI | GGYRCC | 1 cut(s) | 761 |
| BanII | GRGCYC | 1 cut(s) | 583 |
| BbsI | GAAGAC | 2 cut(s) | 427, 655 |
| BbvI | GCAGC | 4 cut(s) | 569, 601, 626, 709 |
| BccI | CCATC | 6 cut(s) | 592, 602, 627, 656, 710, 731 |
| BciT130I | CCWGG | 2 cut(s) | 281, 670 |
| BcoDI | GTCTC | 5 cut(s) | 87, 463, 551, 691, 888 |
| BcuI | ACTAGT | 1 cut(s) | 308 |
| BfaI | CTAG | 4 cut(s) | 228, 309, 344, 755 |
| BfmI | CTRYAG | 3 cut(s) | 555, 612, 695 |
| BfoI | RGCGCY | 1 cut(s) | 765 |
| BfuAI | ACCTGC | 3 cut(s) | 562, 619, 702 |
| BisI | GCNGC | 4 cut(s) | 558, 590, 615, 698 |
| BlsI | GCNGC | 4 cut(s) | 559, 591, 616, 699 |
| BmcAI | AGTACT | 1 cut(s) | 313 |
| Bme1390I | CCNGG | 2 cut(s) | 281, 670 |
| Bme18I | GGWCC | 2 cut(s) | 644, 672 |
| BmeT110I | CYCGRG | 1 cut(s) | 315 |
| BmgT120I | GGNCC | 2 cut(s) | 644, 672 |
| BmiI | GGNNCC | 2 cut(s) | 646, 763 |
| BmrFI | CCNGG | 2 cut(s) | 281, 670 |
| BmsI | GCATC | 3 cut(s) | 70, 289, 641 |
| BmtI | GCTAGC | 1 cut(s) | 758 |
| BpiI | GAAGAC | 2 cut(s) | 427, 655 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 29 |
| BpmI | CTGGAG | 5 cut(s) | 360, 488, 526, 666, 838 |
| BsaBI | GATNNNNATC | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 1 cut(s) | 762 |
| BsaI | GGTCTC | 1 cut(s) | 463 |
| BsaJI | CCNNGG | 3 cut(s) | 69, 446, 668 |
| BsaWI | WCCGGW | 5 cut(s) | 383, 390, 410, 431, 641 |
| Bse118I | RCCGGY | 5 cut(s) | 383, 641, 711, 758, 812 |
| Bse1I | ACTGG | 5 cut(s) | 377, 429, 543, 572, 683 |
| Bse8I | GATNNNNATC | 1 cut(s) | 527 |
| BseBI | CCWGG | 2 cut(s) | 281, 670 |
| BseDI | CCNNGG | 3 cut(s) | 69, 446, 668 |
| BseGI | GGATG | 5 cut(s) | 125, 289, 304, 355, 754 |
| BseJI | GATNNNNATC | 1 cut(s) | 527 |
| BseMII | CTCAG | 2 cut(s) | 102, 731 |
| BseNI | ACTGG | 5 cut(s) | 377, 429, 543, 572, 683 |
| BseRI | GAGGAG | 1 cut(s) | 878 |
| BseXI | GCAGC | 4 cut(s) | 569, 601, 626, 709 |
| Bsh1236I | CGCG | 1 cut(s) | 448 |
| Bsh1285I | CGRYCG | 5 cut(s) | 405, 446, 531, 642, 712 |
| BshFI | GGCC | 2 cut(s) | 373, 715 |
| BshNI | GGYRCC | 1 cut(s) | 761 |
| BshTI | ACCGGT | 2 cut(s) | 383, 641 |
| BsiEI | CGRYCG | 5 cut(s) | 405, 446, 531, 642, 712 |
| BsiHKCI | CYCGRG | 1 cut(s) | 315 |
| BslFI | GGGAC | 1 cut(s) | 630 |
| BsmAI | GTCTC | 5 cut(s) | 87, 463, 551, 691, 888 |
| BsmFI | GGGAC | 1 cut(s) | 630 |
| BsmI | GAATGC | 1 cut(s) | 151 |
| BsnI | GGCC | 2 cut(s) | 373, 715 |
| Bso31I | GGTCTC | 1 cut(s) | 463 |
| BsoBI | CYCGRG | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 1 cut(s) | 583 |
| Bsp143I | GATC | 4 cut(s) | 528, 720, 768, 856 |
| Bsp19I | CCATGG | 1 cut(s) | 69 |
| BspACI | CCGC | 4 cut(s) | 446, 448, 487, 654 |
| BspANI | GGCC | 2 cut(s) | 373, 715 |
| BspCNI | CTCAG | 2 cut(s) | 103, 730 |
| BspFNI | CGCG | 1 cut(s) | 448 |
| BspLI | GGNNCC | 2 cut(s) | 646, 763 |
| BspMAI | CTGCAG | 3 cut(s) | 559, 616, 699 |
| BspMI | ACCTGC | 3 cut(s) | 562, 619, 702 |
| BspOI | GCTAGC | 1 cut(s) | 758 |
| BspT107I | GGYRCC | 1 cut(s) | 761 |
| BspTNI | GGTCTC | 1 cut(s) | 463 |
| BsrFI | RCCGGY | 5 cut(s) | 383, 641, 711, 758, 812 |
| BsrI | ACTGG | 5 cut(s) | 377, 429, 543, 572, 683 |
| BssAI | RCCGGY | 5 cut(s) | 383, 641, 711, 758, 812 |
| BssECI | CCNNGG | 3 cut(s) | 69, 446, 668 |
| BssMI | GATC | 4 cut(s) | 528, 720, 768, 856 |
| BssNI | GRCGYC | 1 cut(s) | 762 |
| BssT1I | CCWWGG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 2 cut(s) | 281, 670 |
| Bst4CI | ACNGT | 2 cut(s) | 406, 626 |
| Bst6I | CTCTTC | 1 cut(s) | 542 |
| BstACI | GRCGYC | 1 cut(s) | 762 |
| BstC8I | GCNNGC | 4 cut(s) | 371, 756, 760, 814 |
| BstDEI | CTNAG | 3 cut(s) | 111, 241, 717 |
| BstDSI | CCRYGG | 2 cut(s) | 69, 446 |
| BstEII | GGTNACC | 2 cut(s) | 386, 427 |
| BstF5I | GGATG | 5 cut(s) | 125, 289, 304, 355, 754 |
| BstFNI | CGCG | 1 cut(s) | 448 |
| BstH2I | RGCGCY | 1 cut(s) | 765 |
| BstHHI | GCGC | 2 cut(s) | 632, 764 |
| BstKTI | GATC | 4 cut(s) | 531, 723, 771, 859 |
| BstMAI | GTCTC | 5 cut(s) | 87, 463, 551, 691, 888 |
| BstMBI | GATC | 4 cut(s) | 528, 720, 768, 856 |
| BstMCI | CGRYCG | 5 cut(s) | 405, 446, 531, 642, 712 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 484, 505 |
| BstNI | CCWGG | 2 cut(s) | 281, 670 |
| BstPI | GGTNACC | 2 cut(s) | 386, 427 |
| BstSCI | CCNGG | 2 cut(s) | 279, 668 |
| BstSFI | CTRYAG | 3 cut(s) | 555, 612, 695 |
| BstUI | CGCG | 1 cut(s) | 448 |
| BstV1I | GCAGC | 4 cut(s) | 569, 601, 626, 709 |
| BstV2I | GAAGAC | 2 cut(s) | 427, 655 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 369 |
| BsuRI | GGCC | 2 cut(s) | 373, 715 |
| BtgI | CCRYGG | 2 cut(s) | 69, 446 |
| BtgZI | GCGATG | 1 cut(s) | 570 |
| BtsCI | GGATG | 5 cut(s) | 125, 289, 304, 355, 754 |
| BtsI | GCAGTG | 1 cut(s) | 807 |
| BtsIMutI | CAGTG | 2 cut(s) | 384, 807 |
| BveI | ACCTGC | 3 cut(s) | 562, 619, 702 |
| Cac8I | GCNNGC | 4 cut(s) | 371, 756, 760, 814 |
| CfoI | GCGC | 2 cut(s) | 632, 764 |
| Cfr10I | RCCGGY | 5 cut(s) | 383, 641, 711, 758, 812 |
| Cfr13I | GGNCC | 2 cut(s) | 644, 672 |
| Cfr42I | CCGCGG | 1 cut(s) | 449 |
| Csp6I | GTAC | 2 cut(s) | 306, 312 |
| CspAI | ACCGGT | 2 cut(s) | 383, 641 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 183, 218 |
| CviAII | CATG | 3 cut(s) | 70, 221, 496 |
| CviQI | GTAC | 2 cut(s) | 306, 312 |
| DdeI | CTNAG | 3 cut(s) | 111, 241, 717 |
| DinI | GGCGCC | 1 cut(s) | 763 |
| DpnI | GATC | 4 cut(s) | 530, 722, 770, 858 |
| DpnII | GATC | 4 cut(s) | 528, 720, 768, 856 |
| Eam1104I | CTCTTC | 1 cut(s) | 542 |
| EarI | CTCTTC | 1 cut(s) | 542 |
| EciI | GGCGGA | 1 cut(s) | 643 |
| Eco130I | CCWWGG | 1 cut(s) | 69 |
| Eco24I | GRGCYC | 1 cut(s) | 583 |
| Eco31I | GGTCTC | 1 cut(s) | 463 |
| Eco47I | GGWCC | 2 cut(s) | 644, 672 |
| Eco88I | CYCGRG | 1 cut(s) | 315 |
| Eco91I | GGTNACC | 2 cut(s) | 386, 427 |
| EcoO109I | RGGNCCY | 1 cut(s) | 672 |
| EcoO65I | GGTNACC | 2 cut(s) | 386, 427 |
| EcoRII | CCWGG | 2 cut(s) | 279, 668 |
| EcoT14I | CCWWGG | 1 cut(s) | 69 |
| EcoT38I | GRGCYC | 1 cut(s) | 583 |
| EgeI | GGCGCC | 1 cut(s) | 763 |
| EheI | GGCGCC | 1 cut(s) | 763 |
| ErhI | CCWWGG | 1 cut(s) | 69 |
| FaeI | CATG | 3 cut(s) | 73, 224, 499 |
| FaiI | YATR | 8 cut(s) | 38, 66, 71, 210, 222, 294, 332, 497 |
| FaqI | GGGAC | 1 cut(s) | 630 |
| FatI | CATG | 3 cut(s) | 69, 220, 495 |
| FauI | CCCGC | 1 cut(s) | 441 |
| FblI | GTMKAC | 2 cut(s) | 729, 777 |
| Fnu4HI | GCNGC | 4 cut(s) | 558, 590, 615, 698 |
| FokI | GGATG | 5 cut(s) | 132, 296, 311, 342, 761 |
| FriOI | GRGCYC | 1 cut(s) | 583 |
| Fsp4HI | GCNGC | 4 cut(s) | 558, 590, 615, 698 |
| FspBI | CTAG | 4 cut(s) | 228, 309, 344, 755 |
| GlaI | GCGC | 2 cut(s) | 631, 763 |
| GluI | GCNGC | 4 cut(s) | 558, 590, 615, 698 |
| GsuI | CTGGAG | 5 cut(s) | 360, 488, 526, 666, 838 |
| HaeII | RGCGCY | 1 cut(s) | 765 |
| HaeIII | GGCC | 2 cut(s) | 373, 715 |
| HhaI | GCGC | 2 cut(s) | 632, 764 |
| Hin1I | GRCGYC | 1 cut(s) | 762 |
| Hin1II | CATG | 3 cut(s) | 73, 224, 499 |
| Hin6I | GCGC | 2 cut(s) | 630, 762 |
| HinP1I | GCGC | 2 cut(s) | 630, 762 |
| HincII | GTYRAC | 2 cut(s) | 730, 778 |
| HindII | GTYRAC | 2 cut(s) | 730, 778 |
| HindIII | AAGCTT | 1 cut(s) | 141 |
| HinfI | GANTC | 7 cut(s) | 12, 394, 414, 435, 512, 523, 534 |
| HphI | GGTGA | 8 cut(s) | 20, 85, 398, 439, 543, 600, 614, 683 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 730, 778 |
| Hpy188I | TCNGA | 9 cut(s) | 112, 419, 528, 533, 569, 578, 639, 709, 720 |
| Hpy188III | TCNNGA | 2 cut(s) | 188, 860 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 730, 778 |
| Hpy99I | CGWCG | 2 cut(s) | 734, 782 |
| HpyAV | CCTTC | 5 cut(s) | 171, 572, 667, 788, 878 |
| HpyCH4III | ACNGT | 2 cut(s) | 406, 626 |
| HpyCH4IV | ACGT | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 5 cut(s) | 83, 151, 557, 614, 697 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 484, 505 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 241, 717 |
| HpySE526I | ACGT | 1 cut(s) | 45 |
| Hsp92I | GRCGYC | 1 cut(s) | 762 |
| Hsp92II | CATG | 3 cut(s) | 73, 224, 499 |
| HspAI | GCGC | 2 cut(s) | 630, 762 |
| KasI | GGCGCC | 1 cut(s) | 761 |
| KroI | GCCGGC | 2 cut(s) | 758, 812 |
| KroNI | GCCGGC | 2 cut(s) | 760, 814 |
| KspI | CCGCGG | 1 cut(s) | 449 |
| Kzo9I | GATC | 4 cut(s) | 528, 720, 768, 856 |
| Lsp1109I | GCAGC | 4 cut(s) | 569, 601, 626, 709 |
| LweI | GCATC | 3 cut(s) | 70, 289, 641 |
| MaeI | CTAG | 4 cut(s) | 228, 309, 344, 755 |
| MaeII | ACGT | 1 cut(s) | 45 |
| MaeIII | GTNAC | 4 cut(s) | 379, 386, 406, 427 |
| MalI | GATC | 4 cut(s) | 530, 722, 770, 858 |
| MboI | GATC | 4 cut(s) | 528, 720, 768, 856 |
| MboII | GAAGA | 6 cut(s) | 113, 156, 432, 529, 655, 746 |
| MhlI | GDGCHC | 1 cut(s) | 583 |
| MluCI | AATT | 1 cut(s) | 156 |
| Mly113I | GGCGCC | 1 cut(s) | 762 |
| MlyI | GAGTC | 2 cut(s) | 6, 528 |
| MmeI | TCCRAC | 3 cut(s) | 592, 662, 732 |
| MroNI | GCCGGC | 2 cut(s) | 758, 812 |
| MseI | TTAA | 1 cut(s) | 87 |
| MspA1I | CMGCKG | 1 cut(s) | 448 |
| MspR9I | CCNGG | 2 cut(s) | 281, 670 |
| Mva1269I | GAATGC | 1 cut(s) | 151 |
| MvaI | CCWGG | 2 cut(s) | 281, 670 |
| MvnI | CGCG | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 484, 505 |
| NaeI | GCCGGC | 2 cut(s) | 760, 814 |
| NarI | GGCGCC | 1 cut(s) | 762 |
| NcoI | CCATGG | 1 cut(s) | 69 |
| NdeII | GATC | 4 cut(s) | 528, 720, 768, 856 |
| NgoMIV | GCCGGC | 2 cut(s) | 758, 812 |
| NheI | GCTAGC | 1 cut(s) | 754 |
| NlaIII | CATG | 3 cut(s) | 73, 224, 499 |
| NlaIV | GGNNCC | 2 cut(s) | 646, 763 |
| NmeAIII | GCCGAG | 1 cut(s) | 790 |
| NmuCI | GTSAC | 4 cut(s) | 379, 386, 406, 427 |
| PaeR7I | CTCGAG | 1 cut(s) | 315 |
| PaqCI | CACCTGC | 3 cut(s) | 562, 619, 702 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 777 |
| PctI | GAATGC | 1 cut(s) | 151 |
| PdiI | GCCGGC | 2 cut(s) | 760, 814 |
| PfeI | GAWTC | 5 cut(s) | 394, 414, 435, 512, 523 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 37 |
| PfoI | TCCNGGA | 1 cut(s) | 279 |
| PinAI | ACCGGT | 2 cut(s) | 383, 641 |
| PkrI | GCNGC | 4 cut(s) | 559, 591, 616, 699 |
| Ple19I | CGATCG | 1 cut(s) | 531 |
| PleI | GAGTC | 2 cut(s) | 6, 528 |
| PluTI | GGCGCC | 1 cut(s) | 765 |
| PpsI | GAGTC | 2 cut(s) | 6, 528 |
| PpuMI | RGGWCCY | 1 cut(s) | 672 |
| Psp5II | RGGWCCY | 1 cut(s) | 672 |
| Psp6I | CCWGG | 2 cut(s) | 279, 668 |
| PspEI | GGTNACC | 2 cut(s) | 386, 427 |
| PspGI | CCWGG | 2 cut(s) | 279, 668 |
| PspN4I | GGNNCC | 2 cut(s) | 646, 763 |
| PspPI | GGNCC | 2 cut(s) | 644, 672 |
| PspPPI | RGGWCCY | 1 cut(s) | 672 |
| PspXI | VCTCGAGB | 1 cut(s) | 315 |
| PstI | CTGCAG | 3 cut(s) | 559, 616, 699 |
| PvuI | CGATCG | 1 cut(s) | 531 |
| RsaI | GTAC | 2 cut(s) | 307, 313 |
| RsaNI | GTAC | 2 cut(s) | 306, 312 |
| SacII | CCGCGG | 1 cut(s) | 449 |
| SalI | GTCGAC | 2 cut(s) | 728, 776 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 4 cut(s) | 558, 590, 615, 698 |
| Sau3AI | GATC | 4 cut(s) | 528, 720, 768, 856 |
| Sau96I | GGNCC | 2 cut(s) | 644, 672 |
| ScaI | AGTACT | 1 cut(s) | 313 |
| SchI | GAGTC | 2 cut(s) | 6, 528 |
| ScrFI | CCNGG | 2 cut(s) | 281, 670 |
| SduI | GDGCHC | 1 cut(s) | 583 |
| SfaNI | GCATC | 3 cut(s) | 70, 289, 641 |
| SfcI | CTRYAG | 3 cut(s) | 555, 612, 695 |
| SfoI | GGCGCC | 1 cut(s) | 763 |
| Sfr274I | CTCGAG | 1 cut(s) | 315 |
| Sfr303I | CCGCGG | 1 cut(s) | 449 |
| SgrBI | CCGCGG | 1 cut(s) | 449 |
| SinI | GGWCC | 2 cut(s) | 644, 672 |
| SlaI | CTCGAG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 1 cut(s) | 315 |
| SmoI | CTYRAG | 1 cut(s) | 315 |
| SpeI | ACTAGT | 1 cut(s) | 308 |
| Sse9I | AATT | 1 cut(s) | 156 |
| SsiI | CCGC | 4 cut(s) | 446, 448, 487, 654 |
| SspDI | GGCGCC | 1 cut(s) | 761 |
| SspMI | CTAG | 4 cut(s) | 228, 309, 344, 755 |
| StyD4I | CCNGG | 2 cut(s) | 279, 668 |
| StyI | CCWWGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 2 cut(s) | 406, 626 |
| TaiI | ACGT | 1 cut(s) | 48 |
| TaqI | TCGA | 4 cut(s) | 316, 729, 771, 777 |
| TasI | AATT | 1 cut(s) | 156 |
| TatI | WGTACW | 2 cut(s) | 305, 311 |
| TfiI | GAWTC | 5 cut(s) | 394, 414, 435, 512, 523 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TscAI | CASTG | 2 cut(s) | 384, 814 |
| TseFI | GTSAC | 4 cut(s) | 379, 386, 406, 427 |
| TseI | GCWGC | 4 cut(s) | 557, 589, 614, 697 |
| Tsp45I | GTSAC | 4 cut(s) | 379, 386, 406, 427 |
| TspDTI | ATGAA | 1 cut(s) | 156 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| TspRI | CASTG | 2 cut(s) | 384, 814 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 37 |
| VpaK11BI | GGWCC | 2 cut(s) | 644, 672 |
| XhoI | CTCGAG | 1 cut(s) | 315 |
| XmiI | GTMKAC | 2 cut(s) | 729, 777 |
| XspI | CTAG | 4 cut(s) | 228, 309, 344, 755 |
| ZrmI | AGTACT | 1 cut(s) | 313 |