Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 53, 284, 711 |
| AcsI | RAATTY | 1 cut(s) | 558 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AfaI | GTAC | 5 cut(s) | 106, 181, 201, 353, 543 |
| AflIII | ACRYGT | 2 cut(s) | 202, 578 |
| AgsI | TTSAA | 1 cut(s) | 517 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 660 |
| AjnI | CCWGG | 2 cut(s) | 87, 128 |
| AluBI | AGCT | 2 cut(s) | 450, 473 |
| AluI | AGCT | 2 cut(s) | 450, 473 |
| AoxI | GGCC | 2 cut(s) | 606, 708 |
| ApeKI | GCWGC | 2 cut(s) | 591, 695 |
| ApoI | RAATTY | 1 cut(s) | 558 |
| AspLEI | GCGC | 1 cut(s) | 510 |
| BanII | GRGCYC | 1 cut(s) | 526 |
| BauI | CACGAG | 1 cut(s) | 532 |
| BbsI | GAAGAC | 2 cut(s) | 321, 490 |
| BbvI | GCAGC | 2 cut(s) | 578, 682 |
| BccI | CCATC | 3 cut(s) | 92, 259, 332 |
| BciT130I | CCWGG | 2 cut(s) | 89, 130 |
| BfaI | CTAG | 3 cut(s) | 144, 420, 745 |
| BfoI | RGCGCY | 1 cut(s) | 511 |
| BisI | GCNGC | 4 cut(s) | 285, 592, 696, 711 |
| BlsI | GCNGC | 4 cut(s) | 286, 593, 697, 712 |
| BmcAI | AGTACT | 1 cut(s) | 106 |
| Bme1390I | CCNGG | 2 cut(s) | 89, 130 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 660 |
| BmiI | GGNNCC | 1 cut(s) | 523 |
| BmrFI | CCNGG | 2 cut(s) | 89, 130 |
| BmrI | ACTGGG | 1 cut(s) | 463 |
| BmsI | GCATC | 1 cut(s) | 202 |
| BmuI | ACTGGG | 1 cut(s) | 463 |
| BpiI | GAAGAC | 2 cut(s) | 321, 490 |
| BpuEI | CTTGAG | 2 cut(s) | 316, 412 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 1 cut(s) | 128 |
| Bse1I | ACTGG | 1 cut(s) | 458 |
| BseBI | CCWGG | 2 cut(s) | 89, 130 |
| BseDI | CCNNGG | 1 cut(s) | 128 |
| BseNI | ACTGG | 1 cut(s) | 458 |
| BseXI | GCAGC | 2 cut(s) | 578, 682 |
| BshFI | GGCC | 2 cut(s) | 608, 710 |
| BslFI | GGGAC | 2 cut(s) | 69, 470 |
| BsmFI | GGGAC | 2 cut(s) | 69, 470 |
| BsnI | GGCC | 2 cut(s) | 608, 710 |
| Bsp1286I | GDGCHC | 1 cut(s) | 526 |
| Bsp1407I | TGTACA | 2 cut(s) | 199, 351 |
| BspACI | CCGC | 3 cut(s) | 53, 284, 711 |
| BspANI | GGCC | 2 cut(s) | 608, 710 |
| BspLI | GGNNCC | 1 cut(s) | 523 |
| BsrGI | TGTACA | 2 cut(s) | 199, 351 |
| BsrI | ACTGG | 1 cut(s) | 458 |
| BssECI | CCNNGG | 1 cut(s) | 128 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| BssSI | CACGAG | 1 cut(s) | 532 |
| Bst2BI | CACGAG | 1 cut(s) | 532 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 130 |
| Bst4CI | ACNGT | 1 cut(s) | 159 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 719, 733 |
| BstAUI | TGTACA | 2 cut(s) | 199, 351 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 2 cut(s) | 471, 738 |
| BstDEI | CTNAG | 3 cut(s) | 245, 276, 681 |
| BstH2I | RGCGCY | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 719, 733 |
| BstNI | CCWGG | 2 cut(s) | 89, 130 |
| BstNSI | RCATGY | 3 cut(s) | 206, 582, 740 |
| BstSCI | CCNGG | 2 cut(s) | 87, 128 |
| BstV1I | GCAGC | 2 cut(s) | 578, 682 |
| BstV2I | GAAGAC | 2 cut(s) | 321, 490 |
| BsuRI | GGCC | 2 cut(s) | 608, 710 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| Cac8I | GCNNGC | 2 cut(s) | 471, 738 |
| CfoI | GCGC | 1 cut(s) | 510 |
| CseI | GACGC | 1 cut(s) | 399 |
| CsiI | ACCWGGT | 1 cut(s) | 87 |
| Csp6I | GTAC | 5 cut(s) | 105, 180, 200, 352, 542 |
| CviJI | RGCY | 7 cut(s) | 287, 450, 473, 524, 608, 679, 710 |
| CviKI_1 | RGCY | 7 cut(s) | 287, 450, 473, 524, 608, 679, 710 |
| CviQI | GTAC | 5 cut(s) | 105, 180, 200, 352, 542 |
| DdeI | CTNAG | 3 cut(s) | 245, 276, 681 |
| DraI | TTTAAA | 1 cut(s) | 625 |
| DriI | GACNNNNNGTC | 1 cut(s) | 660 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 660 |
| Eco24I | GRGCYC | 1 cut(s) | 526 |
| Eco32I | GATATC | 1 cut(s) | 135 |
| EcoRII | CCWGG | 2 cut(s) | 87, 128 |
| EcoRV | GATATC | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 1 cut(s) | 526 |
| FaqI | GGGAC | 2 cut(s) | 69, 470 |
| FauI | CCCGC | 1 cut(s) | 46 |
| Fnu4HI | GCNGC | 4 cut(s) | 285, 592, 696, 711 |
| FriOI | GRGCYC | 1 cut(s) | 526 |
| Fsp4HI | GCNGC | 4 cut(s) | 285, 592, 696, 711 |
| FspBI | CTAG | 3 cut(s) | 144, 420, 745 |
| GlaI | GCGC | 1 cut(s) | 509 |
| GluI | GCNGC | 4 cut(s) | 285, 592, 696, 711 |
| HaeII | RGCGCY | 1 cut(s) | 511 |
| HaeIII | GGCC | 2 cut(s) | 608, 710 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 1 cut(s) | 510 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin6I | GCGC | 1 cut(s) | 508 |
| HinP1I | GCGC | 1 cut(s) | 508 |
| HincII | GTYRAC | 1 cut(s) | 414 |
| HindII | GTYRAC | 1 cut(s) | 414 |
| HindIII | AAGCTT | 1 cut(s) | 471 |
| HinfI | GANTC | 2 cut(s) | 78, 685 |
| Hpy166II | GTNNAC | 2 cut(s) | 352, 414 |
| Hpy8I | GTNNAC | 2 cut(s) | 352, 414 |
| Hpy99I | CGWCG | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 13, 217, 700 |
| HpyCH4III | ACNGT | 1 cut(s) | 159 |
| HpyCH4IV | ACGT | 2 cut(s) | 70, 553 |
| HpyCH4V | TGCA | 7 cut(s) | 404, 568, 594, 633, 722, 736, 740 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 719, 733 |
| HpyF3I | CTNAG | 3 cut(s) | 245, 276, 681 |
| HpySE526I | ACGT | 2 cut(s) | 70, 553 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| HspAI | GCGC | 1 cut(s) | 508 |
| LmnI | GCTCC | 2 cut(s) | 447, 521 |
| LpnPI | CCDG | 5 cut(s) | 74, 101, 115, 142, 439 |
| Lsp1109I | GCAGC | 2 cut(s) | 578, 682 |
| LweI | GCATC | 1 cut(s) | 202 |
| MabI | ACCWGGT | 1 cut(s) | 87 |
| MaeI | CTAG | 3 cut(s) | 144, 420, 745 |
| MaeII | ACGT | 2 cut(s) | 70, 553 |
| MaeIII | GTNAC | 3 cut(s) | 83, 271, 478 |
| MboII | GAAGA | 3 cut(s) | 28, 326, 490 |
| MfeI | CAATTG | 1 cut(s) | 717 |
| MhlI | GDGCHC | 1 cut(s) | 526 |
| MluCI | AATT | 8 cut(s) | 187, 385, 426, 440, 461, 558, 595, 717 |
| MlyI | GAGTC | 1 cut(s) | 87 |
| MmeI | TCCRAC | 1 cut(s) | 73 |
| MnlI | CCTC | 3 cut(s) | 169, 262, 598 |
| MseI | TTAA | 6 cut(s) | 384, 425, 443, 624, 668, 674 |
| MslI | CAYNNNNRTG | 3 cut(s) | 34, 336, 567 |
| MspR9I | CCNGG | 2 cut(s) | 89, 130 |
| MunI | CAATTG | 1 cut(s) | 717 |
| MvaI | CCWGG | 2 cut(s) | 89, 130 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 719, 733 |
| NlaIV | GGNNCC | 1 cut(s) | 523 |
| NmuCI | GTSAC | 2 cut(s) | 271, 478 |
| NspI | RCATGY | 3 cut(s) | 206, 582, 740 |
| PaeI | GCATGC | 1 cut(s) | 740 |
| PciI | ACATGT | 2 cut(s) | 202, 578 |
| PfeI | GAWTC | 1 cut(s) | 685 |
| PkrI | GCNGC | 4 cut(s) | 286, 593, 697, 712 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| PscI | ACATGT | 2 cut(s) | 202, 578 |
| Psp6I | CCWGG | 2 cut(s) | 87, 128 |
| PspGI | CCWGG | 2 cut(s) | 87, 128 |
| PspN4I | GGNNCC | 1 cut(s) | 523 |
| RsaI | GTAC | 5 cut(s) | 106, 181, 201, 353, 543 |
| RsaNI | GTAC | 5 cut(s) | 105, 180, 200, 352, 542 |
| RseI | CAYNNNNRTG | 3 cut(s) | 34, 336, 567 |
| SaqAI | TTAA | 6 cut(s) | 384, 425, 443, 624, 668, 674 |
| SatI | GCNGC | 4 cut(s) | 285, 592, 696, 711 |
| ScaI | AGTACT | 1 cut(s) | 106 |
| SchI | GAGTC | 1 cut(s) | 87 |
| ScrFI | CCNGG | 2 cut(s) | 89, 130 |
| SduI | GDGCHC | 1 cut(s) | 526 |
| SetI | ASST | 7 cut(s) | 73, 93, 273, 452, 475, 556, 674 |
| SexAI | ACCWGGT | 1 cut(s) | 87 |
| SfaNI | GCATC | 1 cut(s) | 202 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 34, 336, 567 |
| SmlI | CTYRAG | 2 cut(s) | 295, 391 |
| SmoI | CTYRAG | 2 cut(s) | 295, 391 |
| SphI | GCATGC | 1 cut(s) | 740 |
| Sse9I | AATT | 8 cut(s) | 187, 385, 426, 440, 461, 558, 595, 717 |
| SsiI | CCGC | 3 cut(s) | 53, 284, 711 |
| SspMI | CTAG | 3 cut(s) | 144, 420, 745 |
| StyD4I | CCNGG | 2 cut(s) | 87, 128 |
| TaaI | ACNGT | 1 cut(s) | 159 |
| TaiI | ACGT | 2 cut(s) | 73, 556 |
| TasI | AATT | 8 cut(s) | 187, 385, 426, 440, 461, 558, 595, 717 |
| TatI | WGTACW | 4 cut(s) | 104, 199, 351, 541 |
| TauI | GCSGC | 2 cut(s) | 287, 713 |
| TfiI | GAWTC | 1 cut(s) | 685 |
| Tru1I | TTAA | 6 cut(s) | 384, 425, 443, 624, 668, 674 |
| Tru9I | TTAA | 6 cut(s) | 384, 425, 443, 624, 668, 674 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TseFI | GTSAC | 2 cut(s) | 271, 478 |
| TseI | GCWGC | 2 cut(s) | 591, 695 |
| Tsp45I | GTSAC | 2 cut(s) | 271, 478 |
| TspDTI | ATGAA | 2 cut(s) | 29, 551 |
| TspGWI | ACGGA | 1 cut(s) | 275 |
| TspRI | CASTG | 1 cut(s) | 12 |
| XapI | RAATTY | 1 cut(s) | 558 |
| XceI | RCATGY | 3 cut(s) | 206, 582, 740 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 95 |
| XspI | CTAG | 3 cut(s) | 144, 420, 745 |
| ZrmI | AGTACT | 1 cut(s) | 106 |