Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 70 | 1.8e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 144 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 175 |
| AccBSI | CCGCTC | 1 cut(s) | 307 |
| AccI | GTMKAC | 2 cut(s) | 245, 314 |
| AciI | CCGC | 4 cut(s) | 295, 307, 326, 344 |
| AcoI | YGGCCR | 2 cut(s) | 87, 292 |
| AfaI | GTAC | 1 cut(s) | 54 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 175, 210 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 264 |
| AjnI | CCWGG | 1 cut(s) | 168 |
| AluBI | AGCT | 3 cut(s) | 11, 137, 149 |
| AluI | AGCT | 3 cut(s) | 11, 137, 149 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw26I | GTCTC | 1 cut(s) | 251 |
| Alw44I | GTGCAC | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 87, 292 |
| ApaLI | GTGCAC | 1 cut(s) | 20 |
| AspS9I | GGNCC | 1 cut(s) | 179 |
| AvaII | GGWCC | 1 cut(s) | 179 |
| BaeGI | GKGCMC | 1 cut(s) | 24 |
| BalI | TGGCCA | 1 cut(s) | 89 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BccI | CCATC | 2 cut(s) | 79, 334 |
| BceAI | ACGGC | 1 cut(s) | 307 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 304, 338 |
| BciT130I | CCWGG | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 100 |
| BcoDI | GTCTC | 1 cut(s) | 251 |
| BfaI | CTAG | 2 cut(s) | 134, 191 |
| BfuAI | ACCTGC | 1 cut(s) | 144 |
| BisI | GCNGC | 2 cut(s) | 295, 326 |
| BlsI | GCNGC | 2 cut(s) | 296, 327 |
| Bme1390I | CCNGG | 1 cut(s) | 170 |
| Bme18I | GGWCC | 1 cut(s) | 179 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 264 |
| BmgT120I | GGNCC | 1 cut(s) | 179 |
| BmiI | GGNNCC | 1 cut(s) | 180 |
| BmrFI | CCNGG | 1 cut(s) | 170 |
| BmsI | GCATC | 1 cut(s) | 49 |
| BpuEI | CTTGAG | 2 cut(s) | 105, 211 |
| BsaAI | YACGTR | 3 cut(s) | 56, 243, 249 |
| BsaJI | CCNNGG | 1 cut(s) | 169 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 175, 210 |
| Bse1I | ACTGG | 1 cut(s) | 182 |
| BseBI | CCWGG | 1 cut(s) | 170 |
| BseDI | CCNNGG | 1 cut(s) | 169 |
| BseGI | GGATG | 2 cut(s) | 10, 90 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 175, 210 |
| BseNI | ACTGG | 1 cut(s) | 182 |
| BseSI | GKGCMC | 1 cut(s) | 24 |
| BseX3I | CGGCCG | 1 cut(s) | 292 |
| BsgI | GTGCAG | 2 cut(s) | 60, 271 |
| Bsh1285I | CGRYCG | 1 cut(s) | 295 |
| BshFI | GGCC | 2 cut(s) | 89, 294 |
| BsiEI | CGRYCG | 1 cut(s) | 295 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 175, 210 |
| BsmAI | GTCTC | 1 cut(s) | 251 |
| BsnI | GGCC | 2 cut(s) | 89, 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp143I | GATC | 1 cut(s) | 100 |
| BspACI | CCGC | 4 cut(s) | 295, 307, 326, 344 |
| BspANI | GGCC | 2 cut(s) | 89, 294 |
| BspLI | GGNNCC | 1 cut(s) | 180 |
| BspMI | ACCTGC | 1 cut(s) | 144 |
| BsrBI | CCGCTC | 1 cut(s) | 307 |
| BsrI | ACTGG | 1 cut(s) | 182 |
| BssECI | CCNNGG | 1 cut(s) | 169 |
| BssMI | GATC | 1 cut(s) | 100 |
| BssNAI | GTATAC | 1 cut(s) | 246 |
| Bst1107I | GTATAC | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 1 cut(s) | 170 |
| Bst4CI | ACNGT | 1 cut(s) | 284 |
| BstBAI | YACGTR | 3 cut(s) | 56, 243, 249 |
| BstC8I | GCNNGC | 3 cut(s) | 151, 299, 323 |
| BstF5I | GGATG | 2 cut(s) | 10, 90 |
| BstKTI | GATC | 1 cut(s) | 103 |
| BstMAI | GTCTC | 1 cut(s) | 251 |
| BstMBI | GATC | 1 cut(s) | 100 |
| BstMCI | CGRYCG | 1 cut(s) | 295 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 350 |
| BstNI | CCWGG | 1 cut(s) | 170 |
| BstSCI | CCNGG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 1 cut(s) | 24 |
| BstSNI | TACGTA | 1 cut(s) | 243 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 309 |
| BstZ17I | GTATAC | 1 cut(s) | 246 |
| BstZI | CGGCCG | 1 cut(s) | 292 |
| BsuRI | GGCC | 2 cut(s) | 89, 294 |
| BtsCI | GGATG | 2 cut(s) | 10, 90 |
| BtsIMutI | CAGTG | 1 cut(s) | 280 |
| BveI | ACCTGC | 1 cut(s) | 144 |
| Cac8I | GCNNGC | 3 cut(s) | 151, 299, 323 |
| Cfr13I | GGNCC | 1 cut(s) | 179 |
| CseI | GACGC | 1 cut(s) | 286 |
| Csp6I | GTAC | 1 cut(s) | 53 |
| CviJI | RGCY | 7 cut(s) | 11, 89, 137, 149, 239, 294, 321 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 89, 137, 149, 239, 294, 321 |
| CviQI | GTAC | 1 cut(s) | 53 |
| DpnI | GATC | 1 cut(s) | 102 |
| DpnII | GATC | 1 cut(s) | 100 |
| DriI | GACNNNNNGTC | 1 cut(s) | 264 |
| EaeI | YGGCCR | 2 cut(s) | 87, 292 |
| EagI | CGGCCG | 1 cut(s) | 292 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 264 |
| EclXI | CGGCCG | 1 cut(s) | 292 |
| Eco105I | TACGTA | 1 cut(s) | 243 |
| Eco47I | GGWCC | 1 cut(s) | 179 |
| Eco52I | CGGCCG | 1 cut(s) | 292 |
| EcoRII | CCWGG | 1 cut(s) | 168 |
| FaiI | YATR | 3 cut(s) | 211, 246, 338 |
| FbaI | TGATCA | 1 cut(s) | 100 |
| FblI | GTMKAC | 2 cut(s) | 245, 314 |
| Fnu4HI | GCNGC | 2 cut(s) | 295, 326 |
| FokI | GGATG | 2 cut(s) | 17, 97 |
| Fsp4HI | GCNGC | 2 cut(s) | 295, 326 |
| FspBI | CTAG | 2 cut(s) | 134, 191 |
| GluI | GCNGC | 2 cut(s) | 295, 326 |
| HaeIII | GGCC | 2 cut(s) | 89, 294 |
| HapII | CCGG | 1 cut(s) | 329 |
| HgaI | GACGC | 1 cut(s) | 286 |
| HincII | GTYRAC | 2 cut(s) | 276, 315 |
| HindII | GTYRAC | 2 cut(s) | 276, 315 |
| HinfI | GANTC | 2 cut(s) | 194, 200 |
| HpaII | CCGG | 1 cut(s) | 329 |
| Hpy166II | GTNNAC | 4 cut(s) | 22, 246, 276, 315 |
| Hpy188I | TCNGA | 2 cut(s) | 199, 270 |
| Hpy188III | TCNNGA | 3 cut(s) | 164, 191, 228 |
| Hpy8I | GTNNAC | 4 cut(s) | 22, 246, 276, 315 |
| HpyCH4III | ACNGT | 1 cut(s) | 284 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 242, 248 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 41, 62, 153, 252 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 350 |
| HpySE526I | ACGT | 3 cut(s) | 55, 242, 248 |
| Ksp22I | TGATCA | 1 cut(s) | 100 |
| Kzo9I | GATC | 1 cut(s) | 100 |
| LmnI | GCTCC | 1 cut(s) | 8 |
| LweI | GCATC | 1 cut(s) | 49 |
| MaeI | CTAG | 2 cut(s) | 134, 191 |
| MaeII | ACGT | 3 cut(s) | 55, 242, 248 |
| MalI | GATC | 1 cut(s) | 102 |
| MbiI | CCGCTC | 1 cut(s) | 307 |
| MboI | GATC | 1 cut(s) | 100 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MlsI | TGGCCA | 1 cut(s) | 89 |
| MluCI | AATT | 1 cut(s) | 45 |
| MluNI | TGGCCA | 1 cut(s) | 89 |
| MlyI | GAGTC | 1 cut(s) | 194 |
| MmeI | TCCRAC | 1 cut(s) | 266 |
| MnlI | CCTC | 4 cut(s) | 121, 229, 325, 343 |
| Mox20I | TGGCCA | 1 cut(s) | 89 |
| MscI | TGGCCA | 1 cut(s) | 89 |
| Msp20I | TGGCCA | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 329 |
| MspR9I | CCNGG | 1 cut(s) | 170 |
| MvaI | CCWGG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 350 |
| NdeII | GATC | 1 cut(s) | 100 |
| NlaIV | GGNNCC | 1 cut(s) | 180 |
| PfeI | GAWTC | 1 cut(s) | 194 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 175 |
| PkrI | GCNGC | 2 cut(s) | 296, 327 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| Ppu21I | YACGTR | 3 cut(s) | 56, 243, 249 |
| Psp6I | CCWGG | 1 cut(s) | 168 |
| PspGI | CCWGG | 1 cut(s) | 168 |
| PspN4I | GGNNCC | 1 cut(s) | 180 |
| PspPI | GGNCC | 1 cut(s) | 179 |
| RsaI | GTAC | 1 cut(s) | 54 |
| RsaNI | GTAC | 1 cut(s) | 53 |
| SalI | GTCGAC | 1 cut(s) | 313 |
| SatI | GCNGC | 2 cut(s) | 295, 326 |
| Sau3AI | GATC | 1 cut(s) | 100 |
| Sau96I | GGNCC | 1 cut(s) | 179 |
| SchI | GAGTC | 1 cut(s) | 194 |
| ScrFI | CCNGG | 1 cut(s) | 170 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SetI | ASST | 9 cut(s) | 13, 58, 108, 139, 151, 158, 245, 251, 268 |
| SfaNI | GCATC | 1 cut(s) | 49 |
| SinI | GGWCC | 1 cut(s) | 179 |
| SmlI | CTYRAG | 2 cut(s) | 120, 226 |
| SmoI | CTYRAG | 2 cut(s) | 120, 226 |
| SnaBI | TACGTA | 1 cut(s) | 243 |
| Sse9I | AATT | 1 cut(s) | 45 |
| SsiI | CCGC | 4 cut(s) | 295, 307, 326, 344 |
| SspMI | CTAG | 2 cut(s) | 134, 191 |
| StyD4I | CCNGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 1 cut(s) | 284 |
| TaiI | ACGT | 3 cut(s) | 58, 245, 251 |
| TaqI | TCGA | 1 cut(s) | 314 |
| TasI | AATT | 1 cut(s) | 45 |
| TauI | GCSGC | 2 cut(s) | 297, 328 |
| TfiI | GAWTC | 1 cut(s) | 194 |
| TscAI | CASTG | 1 cut(s) | 287 |
| TspRI | CASTG | 1 cut(s) | 287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 175 |
| VneI | GTGCAC | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 1 cut(s) | 179 |
| XbaI | TCTAGA | 1 cut(s) | 190 |
| XmiI | GTMKAC | 2 cut(s) | 245, 314 |
| XspI | CTAG | 2 cut(s) | 134, 191 |