Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 124, 188, 287 |
| AclWI | GGATC | 1 cut(s) | 232 |
| AfaI | GTAC | 1 cut(s) | 309 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 187, 188 |
| AgsI | TTSAA | 3 cut(s) | 92, 131, 199 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 49, 81 |
| AlwI | GGATC | 1 cut(s) | 232 |
| AoxI | GGCC | 1 cut(s) | 216 |
| AseI | ATTAAT | 1 cut(s) | 204 |
| AspS9I | GGNCC | 2 cut(s) | 23, 216 |
| AsuC2I | CCSGG | 2 cut(s) | 121, 185 |
| AsuHPI | GGTGA | 1 cut(s) | 364 |
| AvaII | GGWCC | 1 cut(s) | 23 |
| BbsI | GAAGAC | 1 cut(s) | 349 |
| BccI | CCATC | 1 cut(s) | 374 |
| BcnI | CCSGG | 2 cut(s) | 121, 185 |
| BfaI | CTAG | 1 cut(s) | 297 |
| BisI | GCNGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 1 cut(s) | 289 |
| Bme1390I | CCNGG | 2 cut(s) | 121, 185 |
| Bme18I | GGWCC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 2 cut(s) | 23, 216 |
| BmiI | GGNNCC | 1 cut(s) | 217 |
| BmrFI | CCNGG | 2 cut(s) | 121, 185 |
| BpiI | GAAGAC | 1 cut(s) | 349 |
| BpuMI | CCSGG | 2 cut(s) | 121, 185 |
| Bsa29I | ATCGAT | 1 cut(s) | 161 |
| BsaJI | CCNNGG | 3 cut(s) | 183, 339, 375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 243, 273 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 187, 188 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| BseCI | ATCGAT | 1 cut(s) | 161 |
| BseDI | CCNNGG | 3 cut(s) | 183, 339, 375 |
| BseGI | GGATG | 1 cut(s) | 385 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 187, 188 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BshFI | GGCC | 1 cut(s) | 218 |
| BshVI | ATCGAT | 1 cut(s) | 161 |
| BsiSI | CCGG | 2 cut(s) | 121, 185 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 187, 188 |
| BsnI | GGCC | 1 cut(s) | 218 |
| Bsp1407I | TGTACA | 1 cut(s) | 307 |
| Bsp143I | GATC | 2 cut(s) | 158, 224 |
| BspACI | CCGC | 3 cut(s) | 124, 188, 287 |
| BspANI | GGCC | 1 cut(s) | 218 |
| BspDI | ATCGAT | 1 cut(s) | 161 |
| BspLI | GGNNCC | 1 cut(s) | 217 |
| BspPI | GGATC | 1 cut(s) | 232 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrGI | TGTACA | 1 cut(s) | 307 |
| BssECI | CCNNGG | 3 cut(s) | 183, 339, 375 |
| BssMI | GATC | 2 cut(s) | 158, 224 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst6I | CTCTTC | 1 cut(s) | 149 |
| BstAUI | TGTACA | 1 cut(s) | 307 |
| BstF5I | GGATG | 1 cut(s) | 385 |
| BstKTI | GATC | 2 cut(s) | 161, 227 |
| BstMBI | GATC | 2 cut(s) | 158, 224 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 293, 320 |
| BstNSI | RCATGY | 1 cut(s) | 314 |
| BstSCI | CCNGG | 2 cut(s) | 119, 183 |
| BstV2I | GAAGAC | 1 cut(s) | 349 |
| Bsu15I | ATCGAT | 1 cut(s) | 161 |
| BsuRI | GGCC | 1 cut(s) | 218 |
| BsuTUI | ATCGAT | 1 cut(s) | 161 |
| BtsCI | GGATG | 1 cut(s) | 385 |
| Cfr13I | GGNCC | 2 cut(s) | 23, 216 |
| ClaI | ATCGAT | 1 cut(s) | 161 |
| Csp6I | GTAC | 1 cut(s) | 308 |
| CviAII | CATG | 2 cut(s) | 79, 311 |
| CviJI | RGCY | 4 cut(s) | 218, 290, 323, 338 |
| CviKI_1 | RGCY | 4 cut(s) | 218, 290, 323, 338 |
| CviQI | GTAC | 1 cut(s) | 308 |
| DpnI | GATC | 2 cut(s) | 160, 226 |
| DpnII | GATC | 2 cut(s) | 158, 224 |
| Eam1104I | CTCTTC | 1 cut(s) | 149 |
| EarI | CTCTTC | 1 cut(s) | 149 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco47I | GGWCC | 1 cut(s) | 23 |
| EcoO109I | RGGNCCY | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaeI | CATG | 2 cut(s) | 82, 314 |
| FaiI | YATR | 3 cut(s) | 80, 312, 332 |
| FatI | CATG | 2 cut(s) | 78, 310 |
| FauI | CCCGC | 2 cut(s) | 117, 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 288 |
| Fsp4HI | GCNGC | 1 cut(s) | 288 |
| FspBI | CTAG | 1 cut(s) | 297 |
| GluI | GCNGC | 1 cut(s) | 288 |
| HaeIII | GGCC | 1 cut(s) | 218 |
| HapII | CCGG | 2 cut(s) | 121, 185 |
| Hin1II | CATG | 2 cut(s) | 82, 314 |
| HinfI | GANTC | 2 cut(s) | 88, 116 |
| HpaII | CCGG | 2 cut(s) | 121, 185 |
| HphI | GGTGA | 1 cut(s) | 364 |
| Hpy188I | TCNGA | 2 cut(s) | 224, 229 |
| Hpy188III | TCNNGA | 1 cut(s) | 55 |
| HpyAV | CCTTC | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 2 cut(s) | 82, 314 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 293, 320 |
| Hsp92II | CATG | 2 cut(s) | 82, 314 |
| Kzo9I | GATC | 2 cut(s) | 158, 224 |
| LpnPI | CCDG | 3 cut(s) | 40, 134, 198 |
| MaeI | CTAG | 1 cut(s) | 297 |
| MalI | GATC | 2 cut(s) | 160, 226 |
| MboI | GATC | 2 cut(s) | 158, 224 |
| MboII | GAAGA | 5 cut(s) | 70, 163, 166, 349, 352 |
| MluCI | AATT | 2 cut(s) | 201, 388 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 2 cut(s) | 236, 334 |
| MseI | TTAA | 3 cut(s) | 102, 204, 210 |
| MslI | CAYNNNNRTG | 1 cut(s) | 251 |
| MspI | CCGG | 2 cut(s) | 121, 185 |
| MspR9I | CCNGG | 2 cut(s) | 121, 185 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 293, 320 |
| NciI | CCSGG | 2 cut(s) | 121, 185 |
| NdeII | GATC | 2 cut(s) | 158, 224 |
| NlaIII | CATG | 2 cut(s) | 82, 314 |
| NlaIV | GGNNCC | 1 cut(s) | 217 |
| NmeAIII | GCCGAG | 2 cut(s) | 299, 364 |
| NspI | RCATGY | 1 cut(s) | 314 |
| PfeI | GAWTC | 2 cut(s) | 88, 116 |
| PkrI | GCNGC | 1 cut(s) | 289 |
| PshBI | ATTAAT | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 1 cut(s) | 217 |
| PspPI | GGNCC | 2 cut(s) | 23, 216 |
| RsaI | GTAC | 1 cut(s) | 309 |
| RsaNI | GTAC | 1 cut(s) | 308 |
| RseI | CAYNNNNRTG | 1 cut(s) | 251 |
| SaqAI | TTAA | 3 cut(s) | 102, 204, 210 |
| SatI | GCNGC | 1 cut(s) | 288 |
| Sau3AI | GATC | 2 cut(s) | 158, 224 |
| Sau96I | GGNCC | 2 cut(s) | 23, 216 |
| ScrFI | CCNGG | 2 cut(s) | 121, 185 |
| SetI | ASST | 1 cut(s) | 304 |
| SinI | GGWCC | 1 cut(s) | 23 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 251 |
| Sse9I | AATT | 2 cut(s) | 201, 388 |
| SsiI | CCGC | 3 cut(s) | 124, 188, 287 |
| SspI | AATATT | 2 cut(s) | 49, 208 |
| SspMI | CTAG | 1 cut(s) | 297 |
| StyD4I | CCNGG | 2 cut(s) | 119, 183 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaqI | TCGA | 2 cut(s) | 161, 385 |
| TasI | AATT | 2 cut(s) | 201, 388 |
| TatI | WGTACW | 1 cut(s) | 307 |
| TauI | GCSGC | 1 cut(s) | 290 |
| TfiI | GAWTC | 2 cut(s) | 88, 116 |
| Tru1I | TTAA | 3 cut(s) | 102, 204, 210 |
| Tru9I | TTAA | 3 cut(s) | 102, 204, 210 |
| TspGWI | ACGGA | 1 cut(s) | 109 |
| VpaK11BI | GGWCC | 1 cut(s) | 23 |
| VspI | ATTAAT | 1 cut(s) | 204 |
| XceI | RCATGY | 1 cut(s) | 314 |
| XspI | CTAG | 1 cut(s) | 297 |