Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 677 |
| Acc16I | TGCGCA | 1 cut(s) | 228 |
| AciI | CCGC | 3 cut(s) | 124, 688, 710 |
| AclWI | GGATC | 1 cut(s) | 352 |
| AcsI | RAATTY | 5 cut(s) | 59, 264, 332, 338, 569 |
| AcvI | CACGTG | 1 cut(s) | 45 |
| AgsI | TTSAA | 6 cut(s) | 73, 301, 407, 539, 568, 602 |
| AhlI | ACTAGT | 1 cut(s) | 395 |
| AluBI | AGCT | 5 cut(s) | 410, 466, 518, 556, 707 |
| AluI | AGCT | 5 cut(s) | 410, 466, 518, 556, 707 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 1 cut(s) | 554 |
| AlwI | GGATC | 1 cut(s) | 352 |
| Ama87I | CYCGRG | 1 cut(s) | 557 |
| AoxI | GGCC | 1 cut(s) | 693 |
| ApeKI | GCWGC | 4 cut(s) | 518, 586, 704, 707 |
| ApoI | RAATTY | 5 cut(s) | 59, 264, 332, 338, 569 |
| AspLEI | GCGC | 1 cut(s) | 229 |
| AspS9I | GGNCC | 2 cut(s) | 216, 693 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 443, 788 |
| AsuII | TTCGAA | 1 cut(s) | 336 |
| AvaI | CYCGRG | 1 cut(s) | 557 |
| AvaII | GGWCC | 1 cut(s) | 216 |
| BanII | GRGCYC | 1 cut(s) | 558 |
| BbrPI | CACGTG | 1 cut(s) | 45 |
| BbsI | GAAGAC | 1 cut(s) | 288 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvI | GCAGC | 4 cut(s) | 505, 573, 694, 716 |
| BceAI | ACGGC | 1 cut(s) | 190 |
| BcoDI | GTCTC | 1 cut(s) | 554 |
| BcuI | ACTAGT | 1 cut(s) | 395 |
| BfaI | CTAG | 5 cut(s) | 396, 515, 522, 642, 701 |
| BisI | GCNGC | 4 cut(s) | 519, 587, 705, 708 |
| BlsI | GCNGC | 4 cut(s) | 520, 588, 706, 709 |
| Bme18I | GGWCC | 1 cut(s) | 216 |
| BmeT110I | CYCGRG | 1 cut(s) | 557 |
| BmgT120I | GGNCC | 2 cut(s) | 216, 693 |
| BpiI | GAAGAC | 1 cut(s) | 288 |
| Bpu14I | TTCGAA | 1 cut(s) | 336 |
| BpuEI | CTTGAG | 1 cut(s) | 743 |
| BsaAI | YACGTR | 1 cut(s) | 45 |
| BsaI | GGTCTC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 2 cut(s) | 243, 757 |
| Bse1I | ACTGG | 1 cut(s) | 463 |
| Bse3DI | GCAATG | 1 cut(s) | 200 |
| BseDI | CCNNGG | 2 cut(s) | 243, 757 |
| BseGI | GGATG | 2 cut(s) | 187, 508 |
| BseMI | GCAATG | 1 cut(s) | 200 |
| BseMII | CTCAG | 1 cut(s) | 279 |
| BseNI | ACTGG | 1 cut(s) | 463 |
| BseRI | GAGGAG | 1 cut(s) | 566 |
| BseXI | GCAGC | 4 cut(s) | 505, 573, 694, 716 |
| BshFI | GGCC | 1 cut(s) | 695 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiHKCI | CYCGRG | 1 cut(s) | 557 |
| BsmAI | GTCTC | 1 cut(s) | 554 |
| BsnI | GGCC | 1 cut(s) | 695 |
| Bso31I | GGTCTC | 1 cut(s) | 554 |
| BsoBI | CYCGRG | 1 cut(s) | 557 |
| Bsp119I | TTCGAA | 1 cut(s) | 336 |
| Bsp1286I | GDGCHC | 1 cut(s) | 558 |
| Bsp143I | GATC | 2 cut(s) | 22, 357 |
| BspACI | CCGC | 3 cut(s) | 124, 688, 710 |
| BspANI | GGCC | 1 cut(s) | 695 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspPI | GGATC | 1 cut(s) | 352 |
| BspT104I | TTCGAA | 1 cut(s) | 336 |
| BspTNI | GGTCTC | 1 cut(s) | 554 |
| BsrDI | GCAATG | 1 cut(s) | 200 |
| BsrI | ACTGG | 1 cut(s) | 463 |
| BssECI | CCNNGG | 2 cut(s) | 243, 757 |
| BssMI | GATC | 2 cut(s) | 22, 357 |
| BssT1I | CCWWGG | 2 cut(s) | 243, 757 |
| Bst6I | CTCTTC | 1 cut(s) | 628 |
| BstBAI | YACGTR | 1 cut(s) | 45 |
| BstBI | TTCGAA | 1 cut(s) | 336 |
| BstC8I | GCNNGC | 2 cut(s) | 348, 464 |
| BstDEI | CTNAG | 2 cut(s) | 288, 445 |
| BstF5I | GGATG | 2 cut(s) | 187, 508 |
| BstHHI | GCGC | 1 cut(s) | 229 |
| BstKTI | GATC | 2 cut(s) | 25, 360 |
| BstMAI | GTCTC | 1 cut(s) | 554 |
| BstMBI | GATC | 2 cut(s) | 22, 357 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 701 |
| BstV1I | GCAGC | 4 cut(s) | 505, 573, 694, 716 |
| BstV2I | GAAGAC | 1 cut(s) | 288 |
| BstX2I | RGATCY | 1 cut(s) | 357 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 178 |
| BstYI | RGATCY | 1 cut(s) | 357 |
| BsuRI | GGCC | 1 cut(s) | 695 |
| BtgZI | GCGATG | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 187, 508 |
| BtsIMutI | CAGTG | 1 cut(s) | 285 |
| Cac8I | GCNNGC | 2 cut(s) | 348, 464 |
| CfoI | GCGC | 1 cut(s) | 229 |
| Cfr13I | GGNCC | 2 cut(s) | 216, 693 |
| CviAII | CATG | 5 cut(s) | 172, 293, 343, 362, 625 |
| DdeI | CTNAG | 2 cut(s) | 288, 445 |
| DpnI | GATC | 2 cut(s) | 24, 359 |
| DpnII | GATC | 2 cut(s) | 22, 357 |
| DraI | TTTAAA | 1 cut(s) | 118 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 677 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 677 |
| Eam1104I | CTCTTC | 1 cut(s) | 628 |
| EarI | CTCTTC | 1 cut(s) | 628 |
| Ecl136II | GAGCTC | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 2 cut(s) | 243, 757 |
| Eco24I | GRGCYC | 1 cut(s) | 558 |
| Eco31I | GGTCTC | 1 cut(s) | 554 |
| Eco47I | GGWCC | 1 cut(s) | 216 |
| Eco53kI | GAGCTC | 1 cut(s) | 556 |
| Eco72I | CACGTG | 1 cut(s) | 45 |
| Eco88I | CYCGRG | 1 cut(s) | 557 |
| EcoICRI | GAGCTC | 1 cut(s) | 556 |
| EcoRI | GAATTC | 2 cut(s) | 264, 338 |
| EcoT14I | CCWWGG | 2 cut(s) | 243, 757 |
| EcoT38I | GRGCYC | 1 cut(s) | 558 |
| ErhI | CCWWGG | 2 cut(s) | 243, 757 |
| FaeI | CATG | 5 cut(s) | 175, 296, 346, 365, 628 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 9, 41, 366, 398 |
| FatI | CATG | 5 cut(s) | 171, 292, 342, 361, 624 |
| FauI | CCCGC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 4 cut(s) | 519, 587, 705, 708 |
| FokI | GGATG | 2 cut(s) | 194, 495 |
| FriOI | GRGCYC | 1 cut(s) | 558 |
| Fsp4HI | GCNGC | 4 cut(s) | 519, 587, 705, 708 |
| FspBI | CTAG | 5 cut(s) | 396, 515, 522, 642, 701 |
| FspI | TGCGCA | 1 cut(s) | 228 |
| GlaI | GCGC | 1 cut(s) | 228 |
| GluI | GCNGC | 4 cut(s) | 519, 587, 705, 708 |
| HaeIII | GGCC | 1 cut(s) | 695 |
| HhaI | GCGC | 1 cut(s) | 229 |
| Hin1II | CATG | 5 cut(s) | 175, 296, 346, 365, 628 |
| Hin6I | GCGC | 1 cut(s) | 227 |
| HinP1I | GCGC | 1 cut(s) | 227 |
| HincII | GTYRAC | 1 cut(s) | 259 |
| HindII | GTYRAC | 1 cut(s) | 259 |
| HinfI | GANTC | 2 cut(s) | 191, 324 |
| HphI | GGTGA | 3 cut(s) | 232, 443, 788 |
| Hpy166II | GTNNAC | 2 cut(s) | 216, 259 |
| Hpy188I | TCNGA | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 4 cut(s) | 33, 328, 559, 682 |
| Hpy8I | GTNNAC | 2 cut(s) | 216, 259 |
| Hpy99I | CGWCG | 1 cut(s) | 110 |
| HpyAV | CCTTC | 3 cut(s) | 4, 172, 574 |
| HpyCH4IV | ACGT | 1 cut(s) | 44 |
| HpyCH4V | TGCA | 3 cut(s) | 188, 350, 589 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 701 |
| HpyF3I | CTNAG | 2 cut(s) | 288, 445 |
| HpySE526I | ACGT | 1 cut(s) | 44 |
| Hsp92II | CATG | 5 cut(s) | 175, 296, 346, 365, 628 |
| HspAI | GCGC | 1 cut(s) | 227 |
| Kzo9I | GATC | 2 cut(s) | 22, 357 |
| LmnI | GCTCC | 1 cut(s) | 553 |
| LpnPI | CCDG | 5 cut(s) | 18, 232, 360, 444, 615 |
| Lsp1109I | GCAGC | 4 cut(s) | 505, 573, 694, 716 |
| MaeI | CTAG | 5 cut(s) | 396, 515, 522, 642, 701 |
| MaeII | ACGT | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 2 cut(s) | 24, 359 |
| MboI | GATC | 2 cut(s) | 22, 357 |
| MboII | GAAGA | 8 cut(s) | 26, 29, 122, 293, 631, 645, 665, 749 |
| MflI | RGATCY | 1 cut(s) | 357 |
| MhlI | GDGCHC | 1 cut(s) | 558 |
| MluCI | AATT | 6 cut(s) | 59, 230, 264, 332, 338, 569 |
| MnlI | CCTC | 5 cut(s) | 205, 518, 544, 603, 684 |
| MseI | TTAA | 6 cut(s) | 117, 249, 438, 477, 765, 811 |
| MslI | CAYNNNNRTG | 2 cut(s) | 43, 170 |
| MspA1I | CMGCKG | 1 cut(s) | 707 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 701 |
| NdeII | GATC | 2 cut(s) | 22, 357 |
| NlaIII | CATG | 5 cut(s) | 175, 296, 346, 365, 628 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| NsbI | TGCGCA | 1 cut(s) | 228 |
| NspV | TTCGAA | 1 cut(s) | 336 |
| PaeR7I | CTCGAG | 1 cut(s) | 557 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 459 |
| PfeI | GAWTC | 2 cut(s) | 191, 324 |
| PkrI | GCNGC | 4 cut(s) | 520, 588, 706, 709 |
| PmaCI | CACGTG | 1 cut(s) | 45 |
| PmlI | CACGTG | 1 cut(s) | 45 |
| Ppu21I | YACGTR | 1 cut(s) | 45 |
| Psp124BI | GAGCTC | 1 cut(s) | 558 |
| PspCI | CACGTG | 1 cut(s) | 45 |
| PspPI | GGNCC | 2 cut(s) | 216, 693 |
| PsuI | RGATCY | 1 cut(s) | 357 |
| PvuII | CAGCTG | 1 cut(s) | 707 |
| RseI | CAYNNNNRTG | 2 cut(s) | 43, 170 |
| SacI | GAGCTC | 1 cut(s) | 558 |
| SaqAI | TTAA | 6 cut(s) | 117, 249, 438, 477, 765, 811 |
| SatI | GCNGC | 4 cut(s) | 519, 587, 705, 708 |
| Sau3AI | GATC | 2 cut(s) | 22, 357 |
| Sau96I | GGNCC | 2 cut(s) | 216, 693 |
| SduI | GDGCHC | 1 cut(s) | 558 |
| Sfr274I | CTCGAG | 1 cut(s) | 557 |
| SfuI | TTCGAA | 1 cut(s) | 336 |
| SinI | GGWCC | 1 cut(s) | 216 |
| SlaI | CTCGAG | 1 cut(s) | 557 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 43, 170 |
| SmlI | CTYRAG | 2 cut(s) | 557, 722 |
| SmoI | CTYRAG | 2 cut(s) | 557, 722 |
| SpeI | ACTAGT | 1 cut(s) | 395 |
| Sse9I | AATT | 6 cut(s) | 59, 230, 264, 332, 338, 569 |
| SsiI | CCGC | 3 cut(s) | 124, 688, 710 |
| SspI | AATATT | 1 cut(s) | 664 |
| SspMI | CTAG | 5 cut(s) | 396, 515, 522, 642, 701 |
| SstI | GAGCTC | 1 cut(s) | 558 |
| StyI | CCWWGG | 2 cut(s) | 243, 757 |
| TaiI | ACGT | 1 cut(s) | 47 |
| TaqI | TCGA | 3 cut(s) | 336, 558, 717 |
| TasI | AATT | 6 cut(s) | 59, 230, 264, 332, 338, 569 |
| TfiI | GAWTC | 2 cut(s) | 191, 324 |
| Tru1I | TTAA | 6 cut(s) | 117, 249, 438, 477, 765, 811 |
| Tru9I | TTAA | 6 cut(s) | 117, 249, 438, 477, 765, 811 |
| TscAI | CASTG | 1 cut(s) | 292 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 4 cut(s) | 518, 586, 704, 707 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 4 cut(s) | 154, 331, 497, 690 |
| TspGWI | ACGGA | 1 cut(s) | 792 |
| TspRI | CASTG | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 1 cut(s) | 216 |
| XapI | RAATTY | 5 cut(s) | 59, 264, 332, 338, 569 |
| XhoI | CTCGAG | 1 cut(s) | 557 |
| XspI | CTAG | 5 cut(s) | 396, 515, 522, 642, 701 |