Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 127 | 5.3e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AclI | AACGTT | 1 cut(s) | 24 |
| AfaI | GTAC | 1 cut(s) | 458 |
| AgsI | TTSAA | 3 cut(s) | 22, 293, 425 |
| AjnI | CCWGG | 1 cut(s) | 186 |
| AluBI | AGCT | 1 cut(s) | 428 |
| AluI | AGCT | 1 cut(s) | 428 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 437 |
| AspS9I | GGNCC | 1 cut(s) | 259 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 326 |
| AvaII | GGWCC | 1 cut(s) | 259 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 126 |
| BccI | CCATC | 1 cut(s) | 23 |
| BciT130I | CCWGG | 1 cut(s) | 188 |
| BfaI | CTAG | 1 cut(s) | 311 |
| BfmI | CTRYAG | 2 cut(s) | 327, 452 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| Bme1390I | CCNGG | 1 cut(s) | 188 |
| Bme18I | GGWCC | 1 cut(s) | 259 |
| BmgT120I | GGNCC | 1 cut(s) | 259 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 1 cut(s) | 188 |
| BmsI | GCATC | 1 cut(s) | 436 |
| BpiI | GAAGAC | 1 cut(s) | 126 |
| BpmI | CTGGAG | 1 cut(s) | 414 |
| BsaBI | GATNNNNATC | 1 cut(s) | 465 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| Bse8I | GATNNNNATC | 1 cut(s) | 465 |
| BseBI | CCWGG | 1 cut(s) | 188 |
| BseGI | GGATG | 2 cut(s) | 183, 451 |
| BseJI | GATNNNNATC | 1 cut(s) | 465 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| Bsp143I | GATC | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssMI | GATC | 1 cut(s) | 180 |
| Bst2UI | CCWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 1 cut(s) | 456 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstF5I | GGATG | 2 cut(s) | 183, 451 |
| BstKTI | GATC | 1 cut(s) | 183 |
| BstMBI | GATC | 1 cut(s) | 180 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstNI | CCWGG | 1 cut(s) | 188 |
| BstSCI | CCNGG | 1 cut(s) | 186 |
| BstSFI | CTRYAG | 2 cut(s) | 327, 452 |
| BstV2I | GAAGAC | 1 cut(s) | 126 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BtsCI | GGATG | 2 cut(s) | 183, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| CaiI | CAGNNNCTG | 1 cut(s) | 437 |
| Cfr13I | GGNCC | 1 cut(s) | 259 |
| Csp6I | GTAC | 1 cut(s) | 457 |
| CviAII | CATG | 2 cut(s) | 56, 362 |
| CviJI | RGCY | 4 cut(s) | 108, 236, 245, 428 |
| CviKI_1 | RGCY | 4 cut(s) | 108, 236, 245, 428 |
| CviQI | GTAC | 1 cut(s) | 457 |
| DpnI | GATC | 1 cut(s) | 182 |
| DpnII | GATC | 1 cut(s) | 180 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| Eco47I | GGWCC | 1 cut(s) | 259 |
| EcoRII | CCWGG | 1 cut(s) | 186 |
| FaeI | CATG | 2 cut(s) | 59, 365 |
| FatI | CATG | 2 cut(s) | 55, 361 |
| FauNDI | CATATG | 1 cut(s) | 408 |
| FokI | GGATG | 2 cut(s) | 170, 458 |
| FspBI | CTAG | 1 cut(s) | 311 |
| GsuI | CTGGAG | 1 cut(s) | 414 |
| Hin1II | CATG | 2 cut(s) | 59, 365 |
| HinfI | GANTC | 3 cut(s) | 395, 434, 475 |
| HphI | GGTGA | 2 cut(s) | 104, 326 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 2 cut(s) | 431, 443 |
| HpyAV | CCTTC | 1 cut(s) | 82 |
| HpyCH4III | ACNGT | 1 cut(s) | 456 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 2 cut(s) | 322, 465 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 2 cut(s) | 59, 365 |
| Kzo9I | GATC | 1 cut(s) | 180 |
| LmnI | GCTCC | 1 cut(s) | 433 |
| LpnPI | CCDG | 7 cut(s) | 90, 156, 173, 200, 366, 428, 444 |
| LweI | GCATC | 1 cut(s) | 436 |
| MaeI | CTAG | 1 cut(s) | 311 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 1 cut(s) | 182 |
| MboI | GATC | 1 cut(s) | 180 |
| MboII | GAAGA | 5 cut(s) | 36, 126, 264, 266, 305 |
| MluCI | AATT | 1 cut(s) | 317 |
| MlyI | GAGTC | 1 cut(s) | 443 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MnlI | CCTC | 3 cut(s) | 53, 226, 250 |
| MseI | TTAA | 5 cut(s) | 165, 215, 240, 300, 481 |
| MslI | CAYNNNNRTG | 1 cut(s) | 407 |
| MspR9I | CCNGG | 1 cut(s) | 188 |
| MvaI | CCWGG | 1 cut(s) | 188 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeI | CATATG | 1 cut(s) | 408 |
| NdeII | GATC | 1 cut(s) | 180 |
| NlaIII | CATG | 2 cut(s) | 59, 365 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| PfeI | GAWTC | 2 cut(s) | 395, 475 |
| PleI | GAGTC | 1 cut(s) | 442 |
| PpsI | GAGTC | 1 cut(s) | 442 |
| Psp1406I | AACGTT | 1 cut(s) | 24 |
| Psp6I | CCWGG | 1 cut(s) | 186 |
| PspGI | CCWGG | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| PspPI | GGNCC | 1 cut(s) | 259 |
| PstNI | CAGNNNCTG | 1 cut(s) | 437 |
| RsaI | GTAC | 1 cut(s) | 458 |
| RsaNI | GTAC | 1 cut(s) | 457 |
| RseI | CAYNNNNRTG | 1 cut(s) | 407 |
| SaqAI | TTAA | 5 cut(s) | 165, 215, 240, 300, 481 |
| Sau3AI | GATC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 259 |
| SchI | GAGTC | 1 cut(s) | 443 |
| ScrFI | CCNGG | 1 cut(s) | 188 |
| SetI | ASST | 6 cut(s) | 27, 307, 316, 334, 385, 430 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 2 cut(s) | 327, 452 |
| SinI | GGWCC | 1 cut(s) | 259 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 407 |
| Sse9I | AATT | 1 cut(s) | 317 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 1 cut(s) | 311 |
| StyD4I | CCNGG | 1 cut(s) | 186 |
| TaaI | ACNGT | 1 cut(s) | 456 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TasI | AATT | 1 cut(s) | 317 |
| TfiI | GAWTC | 2 cut(s) | 395, 475 |
| Tru1I | TTAA | 5 cut(s) | 165, 215, 240, 300, 481 |
| Tru9I | TTAA | 5 cut(s) | 165, 215, 240, 300, 481 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspDTI | ATGAA | 3 cut(s) | 36, 326, 395 |
| TspRI | CASTG | 1 cut(s) | 109 |
| VpaK11BI | GGWCC | 1 cut(s) | 259 |
| XspI | CTAG | 1 cut(s) | 311 |