Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 320 - 412 | 1.7e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1335 |
| AccBSI | CCGCTC | 1 cut(s) | 158 |
| AccII | CGCG | 1 cut(s) | 874 |
| AciI | CCGC | 5 cut(s) | 158, 597, 872, 1014, 1341 |
| AcsI | RAATTY | 2 cut(s) | 150, 1039 |
| AcuI | CTGAAG | 1 cut(s) | 482 |
| AdeI | CACNNNGTG | 1 cut(s) | 1314 |
| AfaI | GTAC | 2 cut(s) | 23, 710 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 331, 1375 |
| AgsI | TTSAA | 5 cut(s) | 170, 883, 1037, 1387, 1489 |
| AhlI | ACTAGT | 1 cut(s) | 661 |
| AjnI | CCWGG | 4 cut(s) | 845, 857, 1072, 1413 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 822, 854 |
| AluBI | AGCT | 9 cut(s) | 107, 370, 440, 635, 704, 761, 994, 1272, 1556 |
| AluI | AGCT | 9 cut(s) | 107, 370, 440, 635, 704, 761, 994, 1272, 1556 |
| Alw21I | GWGCWC | 2 cut(s) | 1109, 1500 |
| Alw26I | GTCTC | 3 cut(s) | 652, 783, 1132 |
| AoxI | GGCC | 3 cut(s) | 432, 731, 869 |
| ApeKI | GCWGC | 2 cut(s) | 272, 275 |
| ApoI | RAATTY | 2 cut(s) | 150, 1039 |
| AspA2I | CCTAGG | 1 cut(s) | 866 |
| AspS9I | GGNCC | 2 cut(s) | 194, 433 |
| AvaII | GGWCC | 1 cut(s) | 194 |
| AvrII | CCTAGG | 1 cut(s) | 866 |
| AxyI | CCTNAGG | 1 cut(s) | 585 |
| Bbv12I | GWGCWC | 2 cut(s) | 1109, 1500 |
| BbvCI | CCTCAGC | 1 cut(s) | 757 |
| BbvI | GCAGC | 2 cut(s) | 284, 287 |
| BccI | CCATC | 2 cut(s) | 682, 821 |
| BceAI | ACGGC | 1 cut(s) | 242 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1193, 1227, 1423, 1457 |
| BciT130I | CCWGG | 4 cut(s) | 847, 859, 1074, 1415 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BclI | TGATCA | 1 cut(s) | 420 |
| BcoDI | GTCTC | 3 cut(s) | 652, 783, 1132 |
| BcuI | ACTAGT | 1 cut(s) | 661 |
| BfmI | CTRYAG | 1 cut(s) | 1527 |
| BfuAI | ACCTGC | 1 cut(s) | 1335 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BisI | GCNGC | 5 cut(s) | 159, 273, 276, 872, 1342 |
| BlnI | CCTAGG | 1 cut(s) | 866 |
| BlsI | GCNGC | 5 cut(s) | 160, 274, 277, 873, 1343 |
| Bme1390I | CCNGG | 4 cut(s) | 847, 859, 1074, 1415 |
| Bme18I | GGWCC | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 2 cut(s) | 194, 433 |
| BmiI | GGNNCC | 1 cut(s) | 1071 |
| BmrFI | CCNGG | 4 cut(s) | 847, 859, 1074, 1415 |
| BmsI | GCATC | 2 cut(s) | 50, 1025 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 147, 179, 780, 812, 1487, 1519 |
| BpmI | CTGGAG | 2 cut(s) | 233, 1056 |
| Bpu10I | CCTNAGC | 1 cut(s) | 757 |
| BsaI | GGTCTC | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 5 cut(s) | 846, 857, 866, 1065, 1354 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 331, 1375 |
| Bse1I | ACTGG | 1 cut(s) | 560 |
| Bse21I | CCTNAGG | 1 cut(s) | 585 |
| BseBI | CCWGG | 4 cut(s) | 847, 859, 1074, 1415 |
| BseDI | CCNNGG | 5 cut(s) | 846, 857, 866, 1065, 1354 |
| BseGI | GGATG | 4 cut(s) | 72, 564, 674, 832 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 331, 1375 |
| BseMII | CTCAG | 3 cut(s) | 309, 409, 771 |
| BseNI | ACTGG | 1 cut(s) | 560 |
| BseRI | GAGGAG | 3 cut(s) | 20, 134, 915 |
| BseXI | GCAGC | 2 cut(s) | 284, 287 |
| BseYI | CCCAGC | 1 cut(s) | 404 |
| Bsh1236I | CGCG | 1 cut(s) | 874 |
| Bsh1285I | CGRYCG | 1 cut(s) | 836 |
| BshFI | GGCC | 3 cut(s) | 434, 733, 871 |
| BsiEI | CGRYCG | 1 cut(s) | 836 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1109, 1500 |
| BsiSI | CCGG | 1 cut(s) | 251 |
| BslFI | GGGAC | 3 cut(s) | 333, 820, 863 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 331, 1375 |
| BsmAI | GTCTC | 3 cut(s) | 652, 783, 1132 |
| BsmFI | GGGAC | 3 cut(s) | 333, 820, 863 |
| BsnI | GGCC | 3 cut(s) | 434, 733, 871 |
| Bso31I | GGTCTC | 1 cut(s) | 783 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1109, 1500 |
| Bsp143I | GATC | 3 cut(s) | 420, 833, 1288 |
| BspACI | CCGC | 5 cut(s) | 158, 597, 872, 1014, 1341 |
| BspANI | GGCC | 3 cut(s) | 434, 733, 871 |
| BspCNI | CTCAG | 3 cut(s) | 308, 408, 770 |
| BspFNI | CGCG | 1 cut(s) | 874 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| BspLI | GGNNCC | 1 cut(s) | 1071 |
| BspMI | ACCTGC | 1 cut(s) | 1335 |
| BspQI | GCTCTTC | 1 cut(s) | 1114 |
| BspTNI | GGTCTC | 1 cut(s) | 783 |
| BsrBI | CCGCTC | 1 cut(s) | 158 |
| BsrI | ACTGG | 1 cut(s) | 560 |
| BssECI | CCNNGG | 5 cut(s) | 846, 857, 866, 1065, 1354 |
| BssMI | GATC | 3 cut(s) | 420, 833, 1288 |
| BssT1I | CCWWGG | 3 cut(s) | 866, 1065, 1354 |
| Bst2UI | CCWGG | 4 cut(s) | 847, 859, 1074, 1415 |
| Bst4CI | ACNGT | 3 cut(s) | 331, 1126, 1248 |
| Bst6I | CTCTTC | 5 cut(s) | 501, 687, 1114, 1268, 1531 |
| BstC8I | GCNNGC | 1 cut(s) | 735 |
| BstDEI | CTNAG | 4 cut(s) | 295, 395, 585, 757 |
| BstF5I | GGATG | 4 cut(s) | 72, 564, 674, 832 |
| BstFNI | CGCG | 1 cut(s) | 874 |
| BstKTI | GATC | 3 cut(s) | 423, 836, 1291 |
| BstMAI | GTCTC | 3 cut(s) | 652, 783, 1132 |
| BstMBI | GATC | 3 cut(s) | 420, 833, 1288 |
| BstMCI | CGRYCG | 1 cut(s) | 836 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 871, 1350 |
| BstNI | CCWGG | 4 cut(s) | 847, 859, 1074, 1415 |
| BstNSI | RCATGY | 2 cut(s) | 1208, 1376 |
| BstSCI | CCNGG | 4 cut(s) | 845, 857, 1072, 1413 |
| BstSFI | CTRYAG | 1 cut(s) | 1527 |
| BstUI | CGCG | 1 cut(s) | 874 |
| BstV1I | GCAGC | 2 cut(s) | 284, 287 |
| Bsu36I | CCTNAGG | 1 cut(s) | 585 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 3 cut(s) | 434, 733, 871 |
| BtsCI | GGATG | 4 cut(s) | 72, 564, 674, 832 |
| BtsIMutI | CAGTG | 2 cut(s) | 403, 553 |
| BveI | ACCTGC | 1 cut(s) | 1335 |
| Cac8I | GCNNGC | 1 cut(s) | 735 |
| CciI | TCATGA | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 2 cut(s) | 194, 433 |
| CsiI | ACCWGGT | 1 cut(s) | 1413 |
| Csp6I | GTAC | 2 cut(s) | 22, 709 |
| CviAII | CATG | 7 cut(s) | 112, 305, 564, 770, 842, 1205, 1373 |
| CviQI | GTAC | 2 cut(s) | 22, 709 |
| DdeI | CTNAG | 4 cut(s) | 295, 395, 585, 757 |
| DpnI | GATC | 3 cut(s) | 422, 835, 1290 |
| DpnII | GATC | 3 cut(s) | 420, 833, 1288 |
| DraIII | CACNNNGTG | 1 cut(s) | 1314 |
| Eam1104I | CTCTTC | 5 cut(s) | 501, 687, 1114, 1268, 1531 |
| EarI | CTCTTC | 5 cut(s) | 501, 687, 1114, 1268, 1531 |
| Eco130I | CCWWGG | 3 cut(s) | 866, 1065, 1354 |
| Eco31I | GGTCTC | 1 cut(s) | 783 |
| Eco47I | GGWCC | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 1 cut(s) | 482 |
| Eco81I | CCTNAGG | 1 cut(s) | 585 |
| EcoO109I | RGGNCCY | 1 cut(s) | 194 |
| EcoRII | CCWGG | 4 cut(s) | 845, 857, 1072, 1413 |
| EcoT14I | CCWWGG | 3 cut(s) | 866, 1065, 1354 |
| ErhI | CCWWGG | 3 cut(s) | 866, 1065, 1354 |
| FaeI | CATG | 7 cut(s) | 115, 308, 567, 773, 845, 1208, 1376 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1528, 1560 |
| FaqI | GGGAC | 3 cut(s) | 333, 820, 863 |
| FatI | CATG | 7 cut(s) | 111, 304, 563, 769, 841, 1204, 1372 |
| FbaI | TGATCA | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 5 cut(s) | 159, 273, 276, 872, 1342 |
| FokI | GGATG | 4 cut(s) | 79, 571, 661, 839 |
| Fsp4HI | GCNGC | 5 cut(s) | 159, 273, 276, 872, 1342 |
| GluI | GCNGC | 5 cut(s) | 159, 273, 276, 872, 1342 |
| GsaI | CCCAGC | 1 cut(s) | 408 |
| GsuI | CTGGAG | 2 cut(s) | 233, 1056 |
| HaeIII | GGCC | 3 cut(s) | 434, 733, 871 |
| HapII | CCGG | 1 cut(s) | 251 |
| Hin1II | CATG | 7 cut(s) | 115, 308, 567, 773, 845, 1208, 1376 |
| HpaII | CCGG | 1 cut(s) | 251 |
| Hpy166II | GTNNAC | 3 cut(s) | 389, 1090, 1227 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 425, 611, 1513 |
| Hpy188III | TCNNGA | 8 cut(s) | 112, 212, 715, 920, 1187, 1214, 1281, 1451 |
| Hpy8I | GTNNAC | 3 cut(s) | 389, 1090, 1227 |
| HpyAV | CCTTC | 6 cut(s) | 368, 587, 1020, 1045, 1320, 1483 |
| HpyCH4III | ACNGT | 3 cut(s) | 331, 1126, 1248 |
| HpyCH4IV | ACGT | 1 cut(s) | 691 |
| HpyCH4V | TGCA | 2 cut(s) | 41, 1372 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 871, 1350 |
| HpyF3I | CTNAG | 4 cut(s) | 295, 395, 585, 757 |
| HpySE526I | ACGT | 1 cut(s) | 691 |
| Hsp92II | CATG | 7 cut(s) | 115, 308, 567, 773, 845, 1208, 1376 |
| Ksp22I | TGATCA | 1 cut(s) | 420 |
| Kzo9I | GATC | 3 cut(s) | 420, 833, 1288 |
| LguI | GCTCTTC | 1 cut(s) | 1114 |
| LmnI | GCTCC | 2 cut(s) | 1075, 1495 |
| Lsp1109I | GCAGC | 2 cut(s) | 284, 287 |
| LweI | GCATC | 2 cut(s) | 50, 1025 |
| MabI | ACCWGGT | 1 cut(s) | 1413 |
| MaeII | ACGT | 1 cut(s) | 691 |
| MaeIII | GTNAC | 2 cut(s) | 100, 286 |
| MalI | GATC | 3 cut(s) | 422, 835, 1290 |
| MbiI | CCGCTC | 1 cut(s) | 158 |
| MboI | GATC | 3 cut(s) | 420, 833, 1288 |
| MfeI | CAATTG | 1 cut(s) | 356 |
| MhlI | GDGCHC | 2 cut(s) | 1109, 1500 |
| MluCI | AATT | 6 cut(s) | 150, 356, 628, 724, 1039, 1459 |
| MlyI | GAGTC | 6 cut(s) | 124, 315, 802, 1037, 1219, 1548 |
| MmeI | TCCRAC | 4 cut(s) | 44, 247, 635, 1145 |
| MseI | TTAA | 4 cut(s) | 81, 801, 996, 1242 |
| MslI | CAYNNNNRTG | 1 cut(s) | 942 |
| MspI | CCGG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 4 cut(s) | 847, 859, 1074, 1415 |
| MunI | CAATTG | 1 cut(s) | 356 |
| MvaI | CCWGG | 4 cut(s) | 847, 859, 1074, 1415 |
| MvnI | CGCG | 1 cut(s) | 874 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 871, 1350 |
| NdeII | GATC | 3 cut(s) | 420, 833, 1288 |
| NlaIII | CATG | 7 cut(s) | 115, 308, 567, 773, 845, 1208, 1376 |
| NlaIV | GGNNCC | 1 cut(s) | 1071 |
| NmeAIII | GCCGAG | 1 cut(s) | 1109 |
| NspI | RCATGY | 2 cut(s) | 1208, 1376 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PciSI | GCTCTTC | 1 cut(s) | 1114 |
| PfeI | GAWTC | 5 cut(s) | 47, 70, 236, 1284, 1454 |
| PfoI | TCCNGGA | 1 cut(s) | 1072 |
| PkrI | GCNGC | 5 cut(s) | 160, 274, 277, 873, 1343 |
| Ple19I | CGATCG | 1 cut(s) | 836 |
| PleI | GAGTC | 6 cut(s) | 124, 315, 802, 1036, 1218, 1547 |
| PpsI | GAGTC | 6 cut(s) | 124, 315, 802, 1036, 1218, 1547 |
| PpuMI | RGGWCCY | 1 cut(s) | 194 |
| Psp5II | RGGWCCY | 1 cut(s) | 194 |
| Psp6I | CCWGG | 4 cut(s) | 845, 857, 1072, 1413 |
| PspFI | CCCAGC | 1 cut(s) | 404 |
| PspGI | CCWGG | 4 cut(s) | 845, 857, 1072, 1413 |
| PspN4I | GGNNCC | 1 cut(s) | 1071 |
| PspPI | GGNCC | 2 cut(s) | 194, 433 |
| PspPPI | RGGWCCY | 1 cut(s) | 194 |
| PvuI | CGATCG | 1 cut(s) | 836 |
| RsaI | GTAC | 2 cut(s) | 23, 710 |
| RsaNI | GTAC | 2 cut(s) | 22, 709 |
| RseI | CAYNNNNRTG | 1 cut(s) | 942 |
| SapI | GCTCTTC | 1 cut(s) | 1114 |
| SaqAI | TTAA | 4 cut(s) | 81, 801, 996, 1242 |
| SatI | GCNGC | 5 cut(s) | 159, 273, 276, 872, 1342 |
| Sau3AI | GATC | 3 cut(s) | 420, 833, 1288 |
| Sau96I | GGNCC | 2 cut(s) | 194, 433 |
| SchI | GAGTC | 6 cut(s) | 124, 315, 802, 1037, 1219, 1548 |
| ScrFI | CCNGG | 4 cut(s) | 847, 859, 1074, 1415 |
| SduI | GDGCHC | 2 cut(s) | 1109, 1500 |
| SexAI | ACCWGGT | 1 cut(s) | 1413 |
| SfaNI | GCATC | 2 cut(s) | 50, 1025 |
| SfcI | CTRYAG | 1 cut(s) | 1527 |
| SinI | GGWCC | 1 cut(s) | 194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 942 |
| SpeI | ACTAGT | 1 cut(s) | 661 |
| Sse9I | AATT | 6 cut(s) | 150, 356, 628, 724, 1039, 1459 |
| SsiI | CCGC | 5 cut(s) | 158, 597, 872, 1014, 1341 |
| SspI | AATATT | 1 cut(s) | 1396 |
| StyD4I | CCNGG | 4 cut(s) | 845, 857, 1072, 1413 |
| StyI | CCWWGG | 3 cut(s) | 866, 1065, 1354 |
| TaaI | ACNGT | 3 cut(s) | 331, 1126, 1248 |
| TaiI | ACGT | 1 cut(s) | 694 |
| TaqI | TCGA | 6 cut(s) | 154, 746, 898, 1213, 1287, 1450 |
| TasI | AATT | 6 cut(s) | 150, 356, 628, 724, 1039, 1459 |
| TatI | WGTACW | 1 cut(s) | 21 |
| TauI | GCSGC | 3 cut(s) | 161, 874, 1344 |
| TfiI | GAWTC | 5 cut(s) | 47, 70, 236, 1284, 1454 |
| Tru1I | TTAA | 4 cut(s) | 81, 801, 996, 1242 |
| Tru9I | TTAA | 4 cut(s) | 81, 801, 996, 1242 |
| TscAI | CASTG | 2 cut(s) | 403, 560 |
| TseI | GCWGC | 2 cut(s) | 272, 275 |
| TspDTI | ATGAA | 5 cut(s) | 83, 128, 830, 1206, 1255 |
| TspRI | CASTG | 2 cut(s) | 403, 560 |
| VpaK11BI | GGWCC | 1 cut(s) | 194 |
| XapI | RAATTY | 2 cut(s) | 150, 1039 |
| XceI | RCATGY | 2 cut(s) | 1208, 1376 |
| XmaJI | CCTAGG | 1 cut(s) | 866 |